Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02431

Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02430 and BACOVA_02431 are separated by 220 nucleotidesBACOVA_02431 and BACOVA_02432 are separated by 57 nucleotidesBACOVA_02432 and BACOVA_02433 are separated by 30 nucleotides BACOVA_02430: BACOVA_02430 - hypothetical protein, at 195,225 to 196,508 _02430 BACOVA_02431: BACOVA_02431 - hypothetical protein, at 196,729 to 196,836 _02431 BACOVA_02432: BACOVA_02432 - transcriptional regulator, AraC family, at 196,894 to 197,793 _02432 BACOVA_02433: BACOVA_02433 - transcriptional regulator, AraC family, at 197,824 to 198,726 _02433 Position (kb) 196 197Strain fitness (log2 ratio) -2 -1 0 1at 195.737 kb on + strand, within BACOVA_02430at 195.738 kb on - strand, within BACOVA_02430at 195.738 kb on - strand, within BACOVA_02430at 195.744 kb on + strand, within BACOVA_02430at 195.745 kb on - strand, within BACOVA_02430at 195.745 kb on - strand, within BACOVA_02430at 195.775 kb on + strand, within BACOVA_02430at 195.775 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.797 kb on + strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.798 kb on - strand, within BACOVA_02430at 195.819 kb on - strand, within BACOVA_02430at 195.831 kb on + strand, within BACOVA_02430at 196.051 kb on - strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.088 kb on + strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.089 kb on - strand, within BACOVA_02430at 196.090 kb on + strand, within BACOVA_02430at 196.091 kb on - strand, within BACOVA_02430at 196.094 kb on + strand, within BACOVA_02430at 196.095 kb on - strand, within BACOVA_02430at 196.095 kb on - strand, within BACOVA_02430at 196.132 kb on - strand, within BACOVA_02430at 196.187 kb on + strand, within BACOVA_02430at 196.188 kb on - strand, within BACOVA_02430at 196.188 kb on - strand, within BACOVA_02430at 196.194 kb on - strand, within BACOVA_02430at 196.194 kb on - strand, within BACOVA_02430at 196.198 kb on - strand, within BACOVA_02430at 196.198 kb on - strand, within BACOVA_02430at 196.224 kb on - strand, within BACOVA_02430at 196.296 kb on + strand, within BACOVA_02430at 196.297 kb on - strand, within BACOVA_02430at 196.297 kb on - strand, within BACOVA_02430at 196.300 kb on + strand, within BACOVA_02430at 196.301 kb on - strand, within BACOVA_02430at 196.394 kb on + strandat 196.394 kb on + strandat 196.395 kb on - strandat 196.459 kb on - strandat 196.489 kb on + strandat 196.490 kb on - strandat 196.490 kb on - strandat 196.490 kb on - strandat 196.509 kb on + strandat 196.510 kb on - strandat 196.536 kb on + strandat 196.539 kb on - strandat 196.543 kb on - strandat 196.637 kb on + strandat 196.638 kb on - strandat 196.670 kb on - strandat 196.670 kb on - strandat 196.730 kb on + strandat 196.874 kb on - strandat 196.890 kb on - strandat 196.904 kb on - strandat 197.013 kb on + strand, within BACOVA_02432at 197.014 kb on - strand, within BACOVA_02432at 197.061 kb on - strand, within BACOVA_02432at 197.061 kb on - strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.141 kb on + strand, within BACOVA_02432at 197.145 kb on + strand, within BACOVA_02432at 197.146 kb on - strand, within BACOVA_02432at 197.155 kb on + strand, within BACOVA_02432at 197.158 kb on - strand, within BACOVA_02432at 197.221 kb on - strand, within BACOVA_02432at 197.229 kb on + strand, within BACOVA_02432at 197.241 kb on + strand, within BACOVA_02432at 197.248 kb on - strand, within BACOVA_02432at 197.248 kb on - strand, within BACOVA_02432at 197.290 kb on + strand, within BACOVA_02432at 197.290 kb on + strand, within BACOVA_02432at 197.291 kb on - strand, within BACOVA_02432at 197.291 kb on - strand, within BACOVA_02432at 197.297 kb on - strand, within BACOVA_02432at 197.301 kb on - strand, within BACOVA_02432at 197.311 kb on + strand, within BACOVA_02432at 197.323 kb on - strand, within BACOVA_02432at 197.362 kb on - strand, within BACOVA_02432at 197.403 kb on + strand, within BACOVA_02432at 197.403 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.407 kb on + strand, within BACOVA_02432at 197.408 kb on - strand, within BACOVA_02432at 197.426 kb on + strand, within BACOVA_02432at 197.439 kb on + strand, within BACOVA_02432at 197.440 kb on - strand, within BACOVA_02432at 197.442 kb on - strand, within BACOVA_02432at 197.442 kb on - strand, within BACOVA_02432at 197.445 kb on + strand, within BACOVA_02432at 197.446 kb on - strand, within BACOVA_02432at 197.446 kb on - strand, within BACOVA_02432at 197.450 kb on - strand, within BACOVA_02432at 197.450 kb on - strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.454 kb on + strand, within BACOVA_02432at 197.455 kb on - strand, within BACOVA_02432at 197.501 kb on - strand, within BACOVA_02432at 197.503 kb on - strand, within BACOVA_02432at 197.526 kb on + strand, within BACOVA_02432at 197.527 kb on - strand, within BACOVA_02432at 197.542 kb on - strand, within BACOVA_02432at 197.547 kb on + strand, within BACOVA_02432at 197.547 kb on + strand, within BACOVA_02432at 197.577 kb on + strand, within BACOVA_02432at 197.609 kb on + strand, within BACOVA_02432at 197.609 kb on + strand, within BACOVA_02432at 197.610 kb on - strand, within BACOVA_02432at 197.610 kb on - strand, within BACOVA_02432at 197.615 kb on + strand, within BACOVA_02432at 197.616 kb on - strand, within BACOVA_02432at 197.629 kb on - strand, within BACOVA_02432at 197.652 kb on - strand, within BACOVA_02432at 197.652 kb on - strand, within BACOVA_02432at 197.714 kb on - strandat 197.784 kb on + strandat 197.784 kb on + strandat 197.785 kb on - strandat 197.785 kb on - strandat 197.810 kb on + strandat 197.819 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C)
remove
195,737 + BACOVA_02430 0.40 +0.2
195,738 - BACOVA_02430 0.40 +1.1
195,738 - BACOVA_02430 0.40 -0.3
195,744 + BACOVA_02430 0.40 +0.1
195,745 - BACOVA_02430 0.40 +0.8
195,745 - BACOVA_02430 0.40 -0.2
195,775 + BACOVA_02430 0.43 -1.2
195,775 + BACOVA_02430 0.43 -1.1
195,797 + BACOVA_02430 0.45 -0.3
195,797 + BACOVA_02430 0.45 +0.7
195,797 + BACOVA_02430 0.45 -0.3
195,798 - BACOVA_02430 0.45 -1.0
195,798 - BACOVA_02430 0.45 -0.4
195,798 - BACOVA_02430 0.45 +0.1
195,798 - BACOVA_02430 0.45 +0.3
195,819 - BACOVA_02430 0.46 +0.7
195,831 + BACOVA_02430 0.47 -0.5
196,051 - BACOVA_02430 0.64 +0.4
196,088 + BACOVA_02430 0.67 +0.3
196,088 + BACOVA_02430 0.67 -0.1
196,088 + BACOVA_02430 0.67 -1.5
196,089 - BACOVA_02430 0.67 -1.0
196,089 - BACOVA_02430 0.67 -0.0
196,089 - BACOVA_02430 0.67 +0.2
196,090 + BACOVA_02430 0.67 -0.6
196,091 - BACOVA_02430 0.67 -0.3
196,094 + BACOVA_02430 0.68 -0.8
196,095 - BACOVA_02430 0.68 +0.6
196,095 - BACOVA_02430 0.68 -0.6
196,132 - BACOVA_02430 0.71 +1.0
196,187 + BACOVA_02430 0.75 +0.2
196,188 - BACOVA_02430 0.75 -1.0
196,188 - BACOVA_02430 0.75 -0.5
196,194 - BACOVA_02430 0.75 -0.5
196,194 - BACOVA_02430 0.75 +0.2
196,198 - BACOVA_02430 0.76 -0.7
196,198 - BACOVA_02430 0.76 -1.9
196,224 - BACOVA_02430 0.78 +0.0
196,296 + BACOVA_02430 0.83 +0.3
196,297 - BACOVA_02430 0.83 -1.5
196,297 - BACOVA_02430 0.83 -0.8
196,300 + BACOVA_02430 0.84 -1.6
196,301 - BACOVA_02430 0.84 +0.1
196,394 + -0.3
196,394 + -0.5
196,395 - +1.1
196,459 - -0.7
196,489 + +0.5
196,490 - -0.7
196,490 - +0.5
196,490 - -0.6
196,509 + -0.5
196,510 - +1.5
196,536 + -0.2
196,539 - +0.7
196,543 - -1.2
196,637 + +0.8
196,638 - +0.1
196,670 - -1.0
196,670 - +0.6
196,730 + -0.1
196,874 - -1.1
196,890 - +0.5
196,904 - +0.6
197,013 + BACOVA_02432 0.13 +0.6
197,014 - BACOVA_02432 0.13 +0.2
197,061 - BACOVA_02432 0.19 -0.6
197,061 - BACOVA_02432 0.19 -1.4
197,141 + BACOVA_02432 0.27 +0.9
197,141 + BACOVA_02432 0.27 +0.5
197,141 + BACOVA_02432 0.27 +0.1
197,145 + BACOVA_02432 0.28 +0.7
197,146 - BACOVA_02432 0.28 +0.2
197,155 + BACOVA_02432 0.29 -0.0
197,158 - BACOVA_02432 0.29 +0.1
197,221 - BACOVA_02432 0.36 +0.1
197,229 + BACOVA_02432 0.37 +0.3
197,241 + BACOVA_02432 0.39 +1.4
197,248 - BACOVA_02432 0.39 +0.4
197,248 - BACOVA_02432 0.39 +0.8
197,290 + BACOVA_02432 0.44 +0.9
197,290 + BACOVA_02432 0.44 -0.9
197,291 - BACOVA_02432 0.44 -0.5
197,291 - BACOVA_02432 0.44 +0.1
197,297 - BACOVA_02432 0.45 +0.4
197,301 - BACOVA_02432 0.45 +0.2
197,311 + BACOVA_02432 0.46 -0.8
197,323 - BACOVA_02432 0.48 -2.3
197,362 - BACOVA_02432 0.52 -0.8
197,403 + BACOVA_02432 0.57 -0.9
197,403 + BACOVA_02432 0.57 +0.4
197,407 + BACOVA_02432 0.57 -0.3
197,407 + BACOVA_02432 0.57 -0.6
197,407 + BACOVA_02432 0.57 -0.3
197,408 - BACOVA_02432 0.57 +0.2
197,426 + BACOVA_02432 0.59 +0.1
197,439 + BACOVA_02432 0.61 +0.3
197,440 - BACOVA_02432 0.61 +0.9
197,442 - BACOVA_02432 0.61 +0.1
197,442 - BACOVA_02432 0.61 -0.4
197,445 + BACOVA_02432 0.61 +0.1
197,446 - BACOVA_02432 0.61 -0.7
197,446 - BACOVA_02432 0.61 +0.2
197,450 - BACOVA_02432 0.62 +1.3
197,450 - BACOVA_02432 0.62 +0.8
197,454 + BACOVA_02432 0.62 -0.1
197,454 + BACOVA_02432 0.62 +0.3
197,454 + BACOVA_02432 0.62 -0.3
197,455 - BACOVA_02432 0.62 -1.0
197,501 - BACOVA_02432 0.67 -0.8
197,503 - BACOVA_02432 0.68 +0.2
197,526 + BACOVA_02432 0.70 -1.8
197,527 - BACOVA_02432 0.70 -0.1
197,542 - BACOVA_02432 0.72 -0.9
197,547 + BACOVA_02432 0.73 -1.0
197,547 + BACOVA_02432 0.73 +0.6
197,577 + BACOVA_02432 0.76 +1.3
197,609 + BACOVA_02432 0.79 -0.1
197,609 + BACOVA_02432 0.79 -1.3
197,610 - BACOVA_02432 0.80 +0.5
197,610 - BACOVA_02432 0.80 -0.5
197,615 + BACOVA_02432 0.80 -0.1
197,616 - BACOVA_02432 0.80 +0.2
197,629 - BACOVA_02432 0.82 +0.5
197,652 - BACOVA_02432 0.84 -1.1
197,652 - BACOVA_02432 0.84 +0.7
197,714 - +1.4
197,784 + +0.3
197,784 + +0.7
197,785 - +0.7
197,785 - -0.1
197,810 + -0.3
197,819 + +0.7

Or see this region's nucleotide sequence