Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02425

Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02424 and BACOVA_02425 are separated by 28 nucleotidesBACOVA_02425 and BACOVA_02426 overlap by 4 nucleotidesBACOVA_02426 and BACOVA_02427 are separated by 179 nucleotidesBACOVA_02427 and BACOVA_02428 are separated by 133 nucleotides BACOVA_02424: BACOVA_02424 - HRDC domain protein, at 188,809 to 191,406 _02424 BACOVA_02425: BACOVA_02425 - hypothetical protein, at 191,435 to 192,055 _02425 BACOVA_02426: BACOVA_02426 - hypothetical protein, at 192,052 to 192,309 _02426 BACOVA_02427: BACOVA_02427 - hypothetical protein, at 192,489 to 192,599 _02427 BACOVA_02428: BACOVA_02428 - putative dTDP-4-dehydrorhamnose reductase, at 192,733 to 193,644 _02428 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1at 190.448 kb on - strand, within BACOVA_02424at 190.458 kb on + strand, within BACOVA_02424at 190.459 kb on - strand, within BACOVA_02424at 190.462 kb on - strand, within BACOVA_02424at 190.462 kb on - strand, within BACOVA_02424at 190.474 kb on - strand, within BACOVA_02424at 190.474 kb on - strand, within BACOVA_02424at 190.477 kb on - strand, within BACOVA_02424at 190.477 kb on - strand, within BACOVA_02424at 190.614 kb on - strand, within BACOVA_02424at 190.638 kb on + strand, within BACOVA_02424at 190.639 kb on - strand, within BACOVA_02424at 190.819 kb on + strand, within BACOVA_02424at 190.896 kb on - strand, within BACOVA_02424at 190.963 kb on - strand, within BACOVA_02424at 191.002 kb on - strand, within BACOVA_02424at 191.006 kb on + strand, within BACOVA_02424at 191.006 kb on + strand, within BACOVA_02424at 191.031 kb on + strand, within BACOVA_02424at 191.136 kb on + strand, within BACOVA_02424at 191.231 kb on - strandat 191.281 kb on - strandat 191.317 kb on + strandat 191.318 kb on - strandat 191.318 kb on - strandat 191.418 kb on - strandat 191.420 kb on + strandat 191.553 kb on - strand, within BACOVA_02425at 191.748 kb on + strand, within BACOVA_02425at 191.909 kb on - strand, within BACOVA_02425at 191.931 kb on - strand, within BACOVA_02425at 191.936 kb on + strand, within BACOVA_02425at 191.942 kb on + strand, within BACOVA_02425at 191.950 kb on - strand, within BACOVA_02425at 191.950 kb on - strand, within BACOVA_02425at 192.011 kb on - strandat 192.030 kb on - strandat 192.032 kb on + strandat 192.033 kb on - strandat 192.079 kb on + strand, within BACOVA_02426at 192.264 kb on + strand, within BACOVA_02426at 192.280 kb on + strand, within BACOVA_02426at 192.280 kb on + strand, within BACOVA_02426at 192.281 kb on - strand, within BACOVA_02426at 192.336 kb on + strandat 192.337 kb on - strandat 192.337 kb on - strandat 192.338 kb on + strandat 192.434 kb on + strandat 192.572 kb on + strand, within BACOVA_02427at 192.577 kb on - strand, within BACOVA_02427at 192.636 kb on - strandat 192.719 kb on - strandat 192.810 kb on + strandat 192.811 kb on - strandat 192.991 kb on + strand, within BACOVA_02428at 193.019 kb on + strand, within BACOVA_02428at 193.019 kb on + strand, within BACOVA_02428at 193.054 kb on + strand, within BACOVA_02428

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C)
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190,448 - BACOVA_02424 0.63 -0.8
190,458 + BACOVA_02424 0.63 -0.9
190,459 - BACOVA_02424 0.64 -0.5
190,462 - BACOVA_02424 0.64 -0.9
190,462 - BACOVA_02424 0.64 +0.9
190,474 - BACOVA_02424 0.64 -0.8
190,474 - BACOVA_02424 0.64 +0.0
190,477 - BACOVA_02424 0.64 -0.8
190,477 - BACOVA_02424 0.64 +0.1
190,614 - BACOVA_02424 0.69 +0.4
190,638 + BACOVA_02424 0.70 -0.5
190,639 - BACOVA_02424 0.70 -0.6
190,819 + BACOVA_02424 0.77 -0.1
190,896 - BACOVA_02424 0.80 -0.4
190,963 - BACOVA_02424 0.83 -2.0
191,002 - BACOVA_02424 0.84 +1.2
191,006 + BACOVA_02424 0.85 +0.5
191,006 + BACOVA_02424 0.85 -0.5
191,031 + BACOVA_02424 0.86 -0.2
191,136 + BACOVA_02424 0.90 +0.3
191,231 - -0.6
191,281 - -0.4
191,317 + -1.4
191,318 - +0.3
191,318 - +0.4
191,418 - -2.4
191,420 + -0.8
191,553 - BACOVA_02425 0.19 +0.1
191,748 + BACOVA_02425 0.50 -1.1
191,909 - BACOVA_02425 0.76 -1.1
191,931 - BACOVA_02425 0.80 -0.1
191,936 + BACOVA_02425 0.81 -0.6
191,942 + BACOVA_02425 0.82 -0.1
191,950 - BACOVA_02425 0.83 -0.9
191,950 - BACOVA_02425 0.83 -0.9
192,011 - +0.1
192,030 - +0.7
192,032 + +0.7
192,033 - +1.1
192,079 + BACOVA_02426 0.10 -0.1
192,264 + BACOVA_02426 0.82 +0.4
192,280 + BACOVA_02426 0.88 -0.1
192,280 + BACOVA_02426 0.88 -0.3
192,281 - BACOVA_02426 0.89 +0.3
192,336 + -0.6
192,337 - -1.8
192,337 - -0.7
192,338 + -1.5
192,434 + -0.8
192,572 + BACOVA_02427 0.75 +0.7
192,577 - BACOVA_02427 0.79 -0.2
192,636 - -0.6
192,719 - +0.3
192,810 + -3.3
192,811 - -1.0
192,991 + BACOVA_02428 0.28 +0.2
193,019 + BACOVA_02428 0.31 +0.8
193,019 + BACOVA_02428 0.31 +1.0
193,054 + BACOVA_02428 0.35 +0.9

Or see this region's nucleotide sequence