Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02336

Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02334 and BACOVA_02335 are separated by 57 nucleotidesBACOVA_02335 and BACOVA_02336 are separated by 62 nucleotidesBACOVA_02336 and BACOVA_02337 are separated by 19 nucleotides BACOVA_02334: BACOVA_02334 - HAD hydrolase, family IA, variant 3, at 96,724 to 97,227 _02334 BACOVA_02335: BACOVA_02335 - phosphoribosyl transferase domain protein, at 97,285 to 97,965 _02335 BACOVA_02336: BACOVA_02336 - putative DNA protecting protein DprA, at 98,028 to 98,990 _02336 BACOVA_02337: BACOVA_02337 - helicase C-terminal domain protein, at 99,010 to 103,965 _02337 Position (kb) 98 99Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 97.038 kb on + strand, within BACOVA_02334at 97.063 kb on - strand, within BACOVA_02334at 97.063 kb on - strand, within BACOVA_02334at 97.063 kb on - strand, within BACOVA_02334at 97.074 kb on + strand, within BACOVA_02334at 97.081 kb on + strand, within BACOVA_02334at 97.103 kb on + strand, within BACOVA_02334at 97.103 kb on + strand, within BACOVA_02334at 97.104 kb on - strand, within BACOVA_02334at 97.104 kb on - strand, within BACOVA_02334at 97.128 kb on + strand, within BACOVA_02334at 97.128 kb on + strand, within BACOVA_02334at 97.129 kb on - strand, within BACOVA_02334at 97.130 kb on + strand, within BACOVA_02334at 97.131 kb on - strand, within BACOVA_02334at 97.132 kb on + strand, within BACOVA_02334at 97.132 kb on + strand, within BACOVA_02334at 97.212 kb on + strandat 97.222 kb on - strandat 97.229 kb on - strandat 97.240 kb on - strandat 97.242 kb on + strandat 97.281 kb on + strandat 97.324 kb on + strandat 97.325 kb on - strandat 97.333 kb on + strandat 97.333 kb on + strandat 97.334 kb on - strandat 97.334 kb on - strandat 97.334 kb on - strandat 97.380 kb on + strand, within BACOVA_02335at 97.391 kb on + strand, within BACOVA_02335at 97.391 kb on + strand, within BACOVA_02335at 97.391 kb on + strand, within BACOVA_02335at 97.406 kb on + strand, within BACOVA_02335at 97.416 kb on - strand, within BACOVA_02335at 97.433 kb on + strand, within BACOVA_02335at 97.433 kb on + strand, within BACOVA_02335at 97.433 kb on + strand, within BACOVA_02335at 97.433 kb on + strand, within BACOVA_02335at 97.434 kb on - strand, within BACOVA_02335at 97.445 kb on + strand, within BACOVA_02335at 97.570 kb on + strand, within BACOVA_02335at 97.573 kb on + strand, within BACOVA_02335at 97.574 kb on - strand, within BACOVA_02335at 97.574 kb on - strand, within BACOVA_02335at 97.581 kb on + strand, within BACOVA_02335at 97.581 kb on + strand, within BACOVA_02335at 97.704 kb on - strand, within BACOVA_02335at 97.755 kb on + strand, within BACOVA_02335at 97.756 kb on - strand, within BACOVA_02335at 97.756 kb on - strand, within BACOVA_02335at 97.765 kb on - strand, within BACOVA_02335at 97.822 kb on + strand, within BACOVA_02335at 97.822 kb on + strand, within BACOVA_02335at 97.845 kb on + strand, within BACOVA_02335at 97.880 kb on + strand, within BACOVA_02335at 97.886 kb on - strand, within BACOVA_02335at 97.894 kb on - strand, within BACOVA_02335at 97.956 kb on - strandat 97.956 kb on - strandat 97.962 kb on - strandat 97.962 kb on - strandat 97.962 kb on - strandat 97.978 kb on - strandat 97.978 kb on - strandat 98.000 kb on - strandat 98.026 kb on + strandat 98.060 kb on + strandat 98.060 kb on + strandat 98.100 kb on + strandat 98.100 kb on + strandat 98.100 kb on + strandat 98.102 kb on + strandat 98.194 kb on + strand, within BACOVA_02336at 98.249 kb on + strand, within BACOVA_02336at 98.252 kb on + strand, within BACOVA_02336at 98.262 kb on + strand, within BACOVA_02336at 98.277 kb on + strand, within BACOVA_02336at 98.290 kb on + strand, within BACOVA_02336at 98.290 kb on + strand, within BACOVA_02336at 98.290 kb on + strand, within BACOVA_02336at 98.312 kb on + strand, within BACOVA_02336at 98.370 kb on + strand, within BACOVA_02336at 98.427 kb on + strand, within BACOVA_02336at 98.427 kb on + strand, within BACOVA_02336at 98.468 kb on + strand, within BACOVA_02336at 98.484 kb on + strand, within BACOVA_02336at 98.504 kb on + strand, within BACOVA_02336at 98.507 kb on + strand, within BACOVA_02336at 98.540 kb on + strand, within BACOVA_02336at 98.540 kb on + strand, within BACOVA_02336at 98.540 kb on + strand, within BACOVA_02336at 98.673 kb on + strand, within BACOVA_02336at 98.783 kb on + strand, within BACOVA_02336at 98.786 kb on + strand, within BACOVA_02336at 98.790 kb on + strand, within BACOVA_02336at 98.996 kb on + strandat 99.068 kb on - strandat 99.090 kb on - strandat 99.100 kb on - strandat 99.129 kb on + strandat 99.130 kb on - strandat 99.183 kb on + strandat 99.183 kb on + strandat 99.184 kb on - strandat 99.193 kb on + strandat 99.214 kb on + strandat 99.218 kb on + strandat 99.219 kb on - strandat 99.250 kb on - strandat 99.267 kb on - strandat 99.312 kb on + strandat 99.333 kb on + strandat 99.333 kb on + strandat 99.333 kb on + strandat 99.334 kb on - strandat 99.334 kb on - strandat 99.352 kb on - strandat 99.353 kb on + strandat 99.353 kb on + strandat 99.353 kb on + strandat 99.354 kb on - strandat 99.354 kb on - strandat 99.397 kb on + strandat 99.420 kb on + strandat 99.421 kb on - strandat 99.450 kb on - strandat 99.488 kb on + strandat 99.528 kb on + strand, within BACOVA_02337at 99.546 kb on + strand, within BACOVA_02337at 99.592 kb on - strand, within BACOVA_02337at 99.596 kb on + strand, within BACOVA_02337at 99.597 kb on - strand, within BACOVA_02337at 99.597 kb on - strand, within BACOVA_02337at 99.603 kb on - strand, within BACOVA_02337at 99.603 kb on - strand, within BACOVA_02337at 99.603 kb on - strand, within BACOVA_02337at 99.605 kb on + strand, within BACOVA_02337at 99.605 kb on + strand, within BACOVA_02337at 99.612 kb on + strand, within BACOVA_02337at 99.622 kb on - strand, within BACOVA_02337at 99.622 kb on - strand, within BACOVA_02337at 99.627 kb on + strand, within BACOVA_02337at 99.680 kb on - strand, within BACOVA_02337at 99.759 kb on - strand, within BACOVA_02337at 99.764 kb on + strand, within BACOVA_02337at 99.765 kb on - strand, within BACOVA_02337at 99.808 kb on + strand, within BACOVA_02337at 99.819 kb on + strand, within BACOVA_02337at 99.826 kb on - strand, within BACOVA_02337at 99.844 kb on + strand, within BACOVA_02337at 99.844 kb on + strand, within BACOVA_02337at 99.845 kb on - strand, within BACOVA_02337at 99.868 kb on + strand, within BACOVA_02337at 99.869 kb on - strand, within BACOVA_02337at 99.879 kb on - strand, within BACOVA_02337at 99.898 kb on + strand, within BACOVA_02337at 99.915 kb on - strand, within BACOVA_02337at 99.918 kb on + strand, within BACOVA_02337at 99.919 kb on - strand, within BACOVA_02337at 99.929 kb on - strand, within BACOVA_02337at 99.982 kb on + strand, within BACOVA_02337at 99.982 kb on + strand, within BACOVA_02337at 99.982 kb on + strand, within BACOVA_02337at 99.982 kb on + strand, within BACOVA_02337at 99.983 kb on - strand, within BACOVA_02337

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C)
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97,038 + BACOVA_02334 0.62 -0.1
97,063 - BACOVA_02334 0.67 +1.5
97,063 - BACOVA_02334 0.67 -0.1
97,063 - BACOVA_02334 0.67 +0.1
97,074 + BACOVA_02334 0.69 +0.7
97,081 + BACOVA_02334 0.71 -0.2
97,103 + BACOVA_02334 0.75 -0.2
97,103 + BACOVA_02334 0.75 -0.1
97,104 - BACOVA_02334 0.75 -0.3
97,104 - BACOVA_02334 0.75 +0.1
97,128 + BACOVA_02334 0.80 +0.6
97,128 + BACOVA_02334 0.80 -2.7
97,129 - BACOVA_02334 0.80 -1.3
97,130 + BACOVA_02334 0.81 -0.7
97,131 - BACOVA_02334 0.81 +1.7
97,132 + BACOVA_02334 0.81 -0.8
97,132 + BACOVA_02334 0.81 -0.6
97,212 + +0.1
97,222 - +0.0
97,229 - -1.6
97,240 - -1.7
97,242 + -0.0
97,281 + -1.0
97,324 + +2.1
97,325 - +0.5
97,333 + +1.3
97,333 + +0.1
97,334 - -2.1
97,334 - -0.6
97,334 - -1.3
97,380 + BACOVA_02335 0.14 +0.1
97,391 + BACOVA_02335 0.16 +0.2
97,391 + BACOVA_02335 0.16 +0.2
97,391 + BACOVA_02335 0.16 -1.0
97,406 + BACOVA_02335 0.18 +1.2
97,416 - BACOVA_02335 0.19 -1.3
97,433 + BACOVA_02335 0.22 -1.0
97,433 + BACOVA_02335 0.22 +0.1
97,433 + BACOVA_02335 0.22 +1.4
97,433 + BACOVA_02335 0.22 -0.3
97,434 - BACOVA_02335 0.22 -0.3
97,445 + BACOVA_02335 0.23 -0.8
97,570 + BACOVA_02335 0.42 -0.1
97,573 + BACOVA_02335 0.42 -0.1
97,574 - BACOVA_02335 0.42 +0.1
97,574 - BACOVA_02335 0.42 -0.9
97,581 + BACOVA_02335 0.43 +0.6
97,581 + BACOVA_02335 0.43 +1.3
97,704 - BACOVA_02335 0.62 -1.2
97,755 + BACOVA_02335 0.69 +0.5
97,756 - BACOVA_02335 0.69 -1.1
97,756 - BACOVA_02335 0.69 +0.5
97,765 - BACOVA_02335 0.70 -0.4
97,822 + BACOVA_02335 0.79 +0.2
97,822 + BACOVA_02335 0.79 -1.8
97,845 + BACOVA_02335 0.82 -0.2
97,880 + BACOVA_02335 0.87 -0.4
97,886 - BACOVA_02335 0.88 +1.8
97,894 - BACOVA_02335 0.89 +1.4
97,956 - -0.8
97,956 - -2.3
97,962 - +0.7
97,962 - -0.7
97,962 - +0.1
97,978 - -0.1
97,978 - -0.5
98,000 - +1.0
98,026 + -0.9
98,060 + -0.7
98,060 + -0.3
98,100 + -1.3
98,100 + -0.4
98,100 + -0.2
98,102 + -0.1
98,194 + BACOVA_02336 0.17 -0.2
98,249 + BACOVA_02336 0.23 -1.3
98,252 + BACOVA_02336 0.23 +0.6
98,262 + BACOVA_02336 0.24 -0.9
98,277 + BACOVA_02336 0.26 -1.4
98,290 + BACOVA_02336 0.27 -0.7
98,290 + BACOVA_02336 0.27 -0.8
98,290 + BACOVA_02336 0.27 -3.3
98,312 + BACOVA_02336 0.29 -1.6
98,370 + BACOVA_02336 0.36 -0.9
98,427 + BACOVA_02336 0.41 -0.4
98,427 + BACOVA_02336 0.41 -0.3
98,468 + BACOVA_02336 0.46 -0.8
98,484 + BACOVA_02336 0.47 +0.1
98,504 + BACOVA_02336 0.49 -0.9
98,507 + BACOVA_02336 0.50 +0.3
98,540 + BACOVA_02336 0.53 -1.2
98,540 + BACOVA_02336 0.53 -0.9
98,540 + BACOVA_02336 0.53 -0.8
98,673 + BACOVA_02336 0.67 -0.6
98,783 + BACOVA_02336 0.78 -0.2
98,786 + BACOVA_02336 0.79 -0.2
98,790 + BACOVA_02336 0.79 -0.1
98,996 + +1.3
99,068 - -0.9
99,090 - -1.6
99,100 - +0.7
99,129 + -0.3
99,130 - +0.1
99,183 + -0.9
99,183 + +1.9
99,184 - -0.0
99,193 + -0.6
99,214 + -0.6
99,218 + +0.2
99,219 - +0.9
99,250 - -0.6
99,267 - +0.2
99,312 + -2.0
99,333 + -1.1
99,333 + -1.8
99,333 + -0.1
99,334 - -1.4
99,334 - -0.5
99,352 - -1.0
99,353 + -0.2
99,353 + -0.4
99,353 + -0.8
99,354 - +0.3
99,354 - +0.4
99,397 + -0.3
99,420 + -0.8
99,421 - +0.0
99,450 - +0.3
99,488 + -0.3
99,528 + BACOVA_02337 0.10 +0.1
99,546 + BACOVA_02337 0.11 -2.6
99,592 - BACOVA_02337 0.12 -1.1
99,596 + BACOVA_02337 0.12 -0.7
99,597 - BACOVA_02337 0.12 +0.9
99,597 - BACOVA_02337 0.12 -1.5
99,603 - BACOVA_02337 0.12 -0.9
99,603 - BACOVA_02337 0.12 +0.4
99,603 - BACOVA_02337 0.12 -0.1
99,605 + BACOVA_02337 0.12 +0.9
99,605 + BACOVA_02337 0.12 -0.0
99,612 + BACOVA_02337 0.12 +0.1
99,622 - BACOVA_02337 0.12 -0.2
99,622 - BACOVA_02337 0.12 -0.6
99,627 + BACOVA_02337 0.12 -1.0
99,680 - BACOVA_02337 0.14 -1.6
99,759 - BACOVA_02337 0.15 -0.4
99,764 + BACOVA_02337 0.15 +0.4
99,765 - BACOVA_02337 0.15 -1.0
99,808 + BACOVA_02337 0.16 -0.3
99,819 + BACOVA_02337 0.16 -0.2
99,826 - BACOVA_02337 0.16 +2.3
99,844 + BACOVA_02337 0.17 +0.4
99,844 + BACOVA_02337 0.17 -0.0
99,845 - BACOVA_02337 0.17 +0.7
99,868 + BACOVA_02337 0.17 -0.9
99,869 - BACOVA_02337 0.17 +0.2
99,879 - BACOVA_02337 0.18 +0.3
99,898 + BACOVA_02337 0.18 -0.3
99,915 - BACOVA_02337 0.18 -0.3
99,918 + BACOVA_02337 0.18 -0.2
99,919 - BACOVA_02337 0.18 +0.1
99,929 - BACOVA_02337 0.19 +0.5
99,982 + BACOVA_02337 0.20 +1.3
99,982 + BACOVA_02337 0.20 -2.2
99,982 + BACOVA_02337 0.20 -2.0
99,982 + BACOVA_02337 0.20 +0.5
99,983 - BACOVA_02337 0.20 -1.1

Or see this region's nucleotide sequence