Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02009

Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02008 and BACOVA_02009 are separated by 115 nucleotidesBACOVA_02009 and BACOVA_02010 overlap by 20 nucleotidesBACOVA_02010 and BACOVA_02011 are separated by 19 nucleotides BACOVA_02008: BACOVA_02008 - transposase, IS4 family, at 312,732 to 313,925 _02008 BACOVA_02009: BACOVA_02009 - hypothetical protein, at 314,041 to 314,202 _02009 BACOVA_02010: BACOVA_02010 - hypothetical protein, at 314,183 to 314,332 _02010 BACOVA_02011: BACOVA_02011 - phosphoenolpyruvate carboxykinase (ATP), at 314,352 to 315,959 _02011 Position (kb) 314 315Strain fitness (log2 ratio) -2 -1 0 1 2at 314.140 kb on - strand, within BACOVA_02009at 314.140 kb on - strand, within BACOVA_02009at 314.143 kb on - strand, within BACOVA_02009at 314.161 kb on + strand, within BACOVA_02009at 314.162 kb on - strand, within BACOVA_02009at 314.171 kb on + strand, within BACOVA_02009at 314.172 kb on - strand, within BACOVA_02009at 314.172 kb on - strand, within BACOVA_02009at 314.187 kb on + strandat 314.191 kb on + strandat 314.192 kb on - strandat 314.195 kb on + strandat 314.198 kb on - strandat 314.198 kb on - strandat 314.223 kb on - strand, within BACOVA_02010at 314.243 kb on - strand, within BACOVA_02010at 314.270 kb on + strand, within BACOVA_02010at 314.278 kb on + strand, within BACOVA_02010at 314.294 kb on + strand, within BACOVA_02010at 314.294 kb on + strand, within BACOVA_02010at 314.294 kb on + strand, within BACOVA_02010at 314.295 kb on - strand, within BACOVA_02010at 314.295 kb on - strand, within BACOVA_02010at 314.295 kb on - strand, within BACOVA_02010at 314.333 kb on - strandat 314.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C)
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314,140 - BACOVA_02009 0.61 +0.8
314,140 - BACOVA_02009 0.61 -0.4
314,143 - BACOVA_02009 0.63 +1.5
314,161 + BACOVA_02009 0.74 -0.1
314,162 - BACOVA_02009 0.75 +1.8
314,171 + BACOVA_02009 0.80 -0.0
314,172 - BACOVA_02009 0.81 -0.7
314,172 - BACOVA_02009 0.81 -0.8
314,187 + +0.0
314,191 + -0.5
314,192 - -0.6
314,195 + +0.4
314,198 - +0.2
314,198 - -0.1
314,223 - BACOVA_02010 0.27 +0.4
314,243 - BACOVA_02010 0.40 +2.2
314,270 + BACOVA_02010 0.58 +0.5
314,278 + BACOVA_02010 0.63 +0.1
314,294 + BACOVA_02010 0.74 +0.4
314,294 + BACOVA_02010 0.74 -1.8
314,294 + BACOVA_02010 0.74 +0.4
314,295 - BACOVA_02010 0.75 +0.5
314,295 - BACOVA_02010 0.75 -0.2
314,295 - BACOVA_02010 0.75 -0.7
314,333 - -0.6
314,338 - -0.4

Or see this region's nucleotide sequence