Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01539

Experiment: Mucin from porcine stomach type III 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01538 and BACOVA_01539 are separated by 144 nucleotidesBACOVA_01539 and BACOVA_01540 are separated by 60 nucleotides BACOVA_01538: BACOVA_01538 - MIP family channel protein, at 36,123 to 36,782 _01538 BACOVA_01539: BACOVA_01539 - hypothetical protein, at 36,927 to 37,430 _01539 BACOVA_01540: BACOVA_01540 - OmpA family protein, at 37,491 to 38,660 _01540 Position (kb) 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 35.960 kb on - strandat 35.962 kb on + strandat 36.036 kb on - strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.058 kb on + strandat 36.059 kb on - strandat 36.065 kb on - strandat 36.065 kb on - strandat 36.065 kb on - strandat 36.067 kb on + strandat 36.067 kb on + strandat 36.082 kb on + strandat 36.082 kb on + strandat 36.136 kb on - strandat 36.160 kb on - strandat 36.209 kb on + strand, within BACOVA_01538at 36.209 kb on + strand, within BACOVA_01538at 36.210 kb on - strand, within BACOVA_01538at 36.282 kb on - strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.285 kb on + strand, within BACOVA_01538at 36.286 kb on - strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.290 kb on + strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.291 kb on - strand, within BACOVA_01538at 36.344 kb on + strand, within BACOVA_01538at 36.345 kb on - strand, within BACOVA_01538at 36.345 kb on - strand, within BACOVA_01538at 36.370 kb on - strand, within BACOVA_01538at 36.370 kb on - strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.392 kb on + strand, within BACOVA_01538at 36.393 kb on - strand, within BACOVA_01538at 36.507 kb on + strand, within BACOVA_01538at 36.528 kb on + strand, within BACOVA_01538at 36.533 kb on + strand, within BACOVA_01538at 36.535 kb on + strand, within BACOVA_01538at 36.536 kb on - strand, within BACOVA_01538at 36.536 kb on - strand, within BACOVA_01538at 36.632 kb on - strand, within BACOVA_01538at 36.798 kb on - strandat 36.805 kb on + strandat 36.835 kb on + strandat 36.843 kb on - strandat 36.850 kb on + strandat 36.850 kb on + strandat 36.928 kb on + strandat 36.928 kb on + strandat 36.988 kb on + strand, within BACOVA_01539at 36.989 kb on - strand, within BACOVA_01539at 36.989 kb on - strand, within BACOVA_01539at 37.016 kb on + strand, within BACOVA_01539at 37.017 kb on - strand, within BACOVA_01539at 37.096 kb on + strand, within BACOVA_01539at 37.186 kb on + strand, within BACOVA_01539at 37.187 kb on - strand, within BACOVA_01539at 37.273 kb on + strand, within BACOVA_01539at 37.274 kb on - strand, within BACOVA_01539at 37.274 kb on - strand, within BACOVA_01539at 37.316 kb on + strand, within BACOVA_01539at 37.316 kb on + strand, within BACOVA_01539at 37.317 kb on - strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.319 kb on + strand, within BACOVA_01539at 37.320 kb on - strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.321 kb on + strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.322 kb on - strand, within BACOVA_01539at 37.323 kb on + strand, within BACOVA_01539at 37.324 kb on - strand, within BACOVA_01539at 37.326 kb on + strand, within BACOVA_01539at 37.327 kb on - strand, within BACOVA_01539at 37.430 kb on + strandat 37.490 kb on - strandat 37.504 kb on - strandat 37.586 kb on + strandat 37.603 kb on - strandat 37.609 kb on + strand, within BACOVA_01540at 37.615 kb on + strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.616 kb on - strand, within BACOVA_01540at 37.748 kb on + strand, within BACOVA_01540at 37.749 kb on - strand, within BACOVA_01540at 37.769 kb on + strand, within BACOVA_01540at 37.770 kb on - strand, within BACOVA_01540at 37.925 kb on + strand, within BACOVA_01540at 37.925 kb on + strand, within BACOVA_01540at 37.946 kb on - strand, within BACOVA_01540at 37.999 kb on - strand, within BACOVA_01540at 38.004 kb on + strand, within BACOVA_01540at 38.004 kb on + strand, within BACOVA_01540at 38.295 kb on + strand, within BACOVA_01540at 38.314 kb on + strand, within BACOVA_01540at 38.341 kb on + strand, within BACOVA_01540

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Per-strain Table

Position Strand Gene LocusTag Fraction Mucin from porcine stomach type III 2.5 mg/mL (C)
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35,960 - -0.2
35,962 + -0.1
36,036 - +1.8
36,037 + -0.2
36,037 + -0.5
36,037 + +1.6
36,037 + +0.7
36,037 + +0.4
36,038 - +0.5
36,038 - +0.5
36,038 - +1.6
36,058 + -0.3
36,059 - +1.0
36,065 - +1.1
36,065 - +0.6
36,065 - +0.6
36,067 + +0.4
36,067 + +0.2
36,082 + +0.5
36,082 + -0.7
36,136 - +1.4
36,160 - +0.4
36,209 + BACOVA_01538 0.13 +0.0
36,209 + BACOVA_01538 0.13 -0.8
36,210 - BACOVA_01538 0.13 +0.3
36,282 - BACOVA_01538 0.24 +1.2
36,285 + BACOVA_01538 0.25 +0.5
36,285 + BACOVA_01538 0.25 +0.7
36,285 + BACOVA_01538 0.25 +0.5
36,286 - BACOVA_01538 0.25 +0.6
36,290 + BACOVA_01538 0.25 -0.4
36,290 + BACOVA_01538 0.25 +0.2
36,290 + BACOVA_01538 0.25 +1.4
36,291 - BACOVA_01538 0.25 +1.6
36,291 - BACOVA_01538 0.25 +1.5
36,291 - BACOVA_01538 0.25 +0.3
36,291 - BACOVA_01538 0.25 +0.7
36,291 - BACOVA_01538 0.25 +1.3
36,291 - BACOVA_01538 0.25 +0.7
36,344 + BACOVA_01538 0.33 -0.4
36,345 - BACOVA_01538 0.34 -0.2
36,345 - BACOVA_01538 0.34 +0.8
36,370 - BACOVA_01538 0.37 +1.3
36,370 - BACOVA_01538 0.37 +0.9
36,392 + BACOVA_01538 0.41 +0.4
36,392 + BACOVA_01538 0.41 -0.6
36,392 + BACOVA_01538 0.41 +2.4
36,393 - BACOVA_01538 0.41 +0.1
36,507 + BACOVA_01538 0.58 +0.5
36,528 + BACOVA_01538 0.61 +0.1
36,533 + BACOVA_01538 0.62 -0.5
36,535 + BACOVA_01538 0.62 +0.2
36,536 - BACOVA_01538 0.63 +1.9
36,536 - BACOVA_01538 0.63 +1.1
36,632 - BACOVA_01538 0.77 +0.9
36,798 - +0.0
36,805 + -0.9
36,835 + +0.5
36,843 - +0.3
36,850 + -0.7
36,850 + +0.4
36,928 + -0.9
36,928 + +0.4
36,988 + BACOVA_01539 0.12 -0.6
36,989 - BACOVA_01539 0.12 +0.0
36,989 - BACOVA_01539 0.12 +0.9
37,016 + BACOVA_01539 0.18 -0.6
37,017 - BACOVA_01539 0.18 +0.3
37,096 + BACOVA_01539 0.34 +0.2
37,186 + BACOVA_01539 0.51 +0.2
37,187 - BACOVA_01539 0.52 +1.1
37,273 + BACOVA_01539 0.69 +0.4
37,274 - BACOVA_01539 0.69 +1.0
37,274 - BACOVA_01539 0.69 +1.2
37,316 + BACOVA_01539 0.77 -0.6
37,316 + BACOVA_01539 0.77 +0.1
37,317 - BACOVA_01539 0.77 +0.3
37,319 + BACOVA_01539 0.78 -0.4
37,319 + BACOVA_01539 0.78 +0.1
37,319 + BACOVA_01539 0.78 +0.2
37,319 + BACOVA_01539 0.78 +1.2
37,319 + BACOVA_01539 0.78 -1.1
37,320 - BACOVA_01539 0.78 +0.9
37,321 + BACOVA_01539 0.78 -0.6
37,321 + BACOVA_01539 0.78 +0.1
37,321 + BACOVA_01539 0.78 +1.4
37,322 - BACOVA_01539 0.78 +0.6
37,322 - BACOVA_01539 0.78 +1.3
37,322 - BACOVA_01539 0.78 +1.4
37,323 + BACOVA_01539 0.79 -0.5
37,324 - BACOVA_01539 0.79 +0.9
37,326 + BACOVA_01539 0.79 +0.3
37,327 - BACOVA_01539 0.79 +1.0
37,430 + -0.1
37,490 - -0.3
37,504 - +1.1
37,586 + +0.4
37,603 - -0.2
37,609 + BACOVA_01540 0.10 -0.7
37,615 + BACOVA_01540 0.11 -0.1
37,616 - BACOVA_01540 0.11 +1.7
37,616 - BACOVA_01540 0.11 +0.3
37,616 - BACOVA_01540 0.11 -0.1
37,748 + BACOVA_01540 0.22 -0.4
37,749 - BACOVA_01540 0.22 +0.9
37,769 + BACOVA_01540 0.24 -0.9
37,770 - BACOVA_01540 0.24 +0.1
37,925 + BACOVA_01540 0.37 -1.9
37,925 + BACOVA_01540 0.37 +0.1
37,946 - BACOVA_01540 0.39 -0.1
37,999 - BACOVA_01540 0.43 +0.4
38,004 + BACOVA_01540 0.44 +1.0
38,004 + BACOVA_01540 0.44 +0.3
38,295 + BACOVA_01540 0.69 +0.1
38,314 + BACOVA_01540 0.70 +0.5
38,341 + BACOVA_01540 0.73 -0.1

Or see this region's nucleotide sequence