Strain Fitness in Erwinia amylovora T8 around OLJFJH_04580

Experiment: FE-G2T (Control flower group 2, top)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04570 and OLJFJH_04575 are separated by 48 nucleotidesOLJFJH_04575 and OLJFJH_04580 are separated by 258 nucleotidesOLJFJH_04580 and OLJFJH_04585 are separated by 172 nucleotidesOLJFJH_04585 and OLJFJH_04590 are separated by 130 nucleotides OLJFJH_04570: OLJFJH_04570 - hypothetical protein, at 892,704 to 892,955 _04570 OLJFJH_04575: OLJFJH_04575 - Transposase (Partial), at 893,004 to 893,126 _04575 OLJFJH_04580: OLJFJH_04580 - alpha/beta hydrolase, at 893,385 to 894,206 _04580 OLJFJH_04585: OLJFJH_04585 - cytochrome b561, at 894,379 to 894,903 _04585 OLJFJH_04590: OLJFJH_04590 - xanthine hydroxylase reductase, at 895,034 to 895,996 _04590 Position (kb) 893 894 895Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 892.516 kb on + strandat 892.530 kb on - strandat 892.576 kb on + strandat 892.580 kb on + strandat 892.580 kb on + strandat 892.580 kb on + strandat 892.583 kb on + strandat 892.588 kb on + strandat 892.589 kb on - strandat 892.593 kb on - strandat 892.605 kb on + strandat 892.698 kb on + strandat 892.698 kb on + strandat 892.698 kb on + strandat 892.698 kb on + strandat 892.699 kb on - strandat 892.754 kb on + strand, within OLJFJH_04570at 892.789 kb on + strand, within OLJFJH_04570at 892.789 kb on + strand, within OLJFJH_04570at 892.790 kb on - strand, within OLJFJH_04570at 892.790 kb on - strand, within OLJFJH_04570at 892.941 kb on - strandat 892.946 kb on + strandat 892.947 kb on - strandat 892.977 kb on + strandat 892.984 kb on + strandat 893.072 kb on - strand, within OLJFJH_04575at 893.124 kb on + strandat 893.176 kb on - strandat 893.231 kb on - strandat 893.422 kb on - strandat 893.425 kb on - strandat 893.476 kb on + strand, within OLJFJH_04580at 893.476 kb on + strand, within OLJFJH_04580at 893.535 kb on - strand, within OLJFJH_04580at 893.586 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.588 kb on + strand, within OLJFJH_04580at 893.589 kb on - strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.592 kb on + strand, within OLJFJH_04580at 893.593 kb on - strand, within OLJFJH_04580at 893.593 kb on - strand, within OLJFJH_04580at 893.593 kb on - strand, within OLJFJH_04580at 893.597 kb on + strand, within OLJFJH_04580at 893.598 kb on - strand, within OLJFJH_04580at 893.612 kb on + strand, within OLJFJH_04580at 893.612 kb on + strand, within OLJFJH_04580at 893.613 kb on - strand, within OLJFJH_04580at 893.695 kb on - strand, within OLJFJH_04580at 893.695 kb on - strand, within OLJFJH_04580at 893.695 kb on - strand, within OLJFJH_04580at 893.874 kb on + strand, within OLJFJH_04580at 893.958 kb on - strand, within OLJFJH_04580at 894.123 kb on + strand, within OLJFJH_04580at 894.402 kb on + strandat 894.403 kb on - strandat 894.419 kb on + strandat 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.626 kb on + strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.627 kb on - strand, within OLJFJH_04585at 894.628 kb on + strand, within OLJFJH_04585at 894.629 kb on - strand, within OLJFJH_04585at 894.636 kb on + strand, within OLJFJH_04585at 894.637 kb on - strand, within OLJFJH_04585at 894.686 kb on - strand, within OLJFJH_04585at 894.686 kb on - strand, within OLJFJH_04585at 894.771 kb on + strand, within OLJFJH_04585at 894.774 kb on + strand, within OLJFJH_04585at 894.774 kb on + strand, within OLJFJH_04585at 894.774 kb on + strand, within OLJFJH_04585at 894.775 kb on - strand, within OLJFJH_04585at 894.775 kb on - strand, within OLJFJH_04585at 894.775 kb on - strand, within OLJFJH_04585at 894.775 kb on - strand, within OLJFJH_04585at 894.823 kb on + strand, within OLJFJH_04585at 894.823 kb on + strand, within OLJFJH_04585at 894.824 kb on - strand, within OLJFJH_04585at 894.824 kb on - strand, within OLJFJH_04585at 894.825 kb on + strand, within OLJFJH_04585at 894.825 kb on + strand, within OLJFJH_04585at 894.826 kb on - strand, within OLJFJH_04585at 894.850 kb on + strand, within OLJFJH_04585at 894.851 kb on - strandat 894.851 kb on - strandat 894.874 kb on - strandat 894.918 kb on + strandat 894.919 kb on - strandat 894.919 kb on - strandat 894.919 kb on - strandat 894.938 kb on + strandat 894.947 kb on - strandat 894.947 kb on - strandat 894.950 kb on - strandat 895.017 kb on + strandat 895.017 kb on + strandat 895.018 kb on - strandat 895.018 kb on - strandat 895.018 kb on - strandat 895.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-G2T (Control flower group 2, top)
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892,516 + +4.0
892,530 - +0.3
892,576 + +0.8
892,580 + -0.4
892,580 + +0.2
892,580 + -0.2
892,583 + -0.1
892,588 + -0.3
892,589 - -0.1
892,593 - +0.1
892,605 + +0.8
892,698 + -0.1
892,698 + -1.5
892,698 + -0.5
892,698 + +1.5
892,699 - -0.2
892,754 + OLJFJH_04570 0.20 -0.7
892,789 + OLJFJH_04570 0.34 +0.3
892,789 + OLJFJH_04570 0.34 -0.5
892,790 - OLJFJH_04570 0.34 +0.7
892,790 - OLJFJH_04570 0.34 -1.5
892,941 - -0.2
892,946 + -0.8
892,947 - -0.2
892,977 + -0.3
892,984 + +0.9
893,072 - OLJFJH_04575 0.55 -0.3
893,124 + -0.6
893,176 - -0.5
893,231 - +0.1
893,422 - -0.1
893,425 - +0.1
893,476 + OLJFJH_04580 0.11 +1.3
893,476 + OLJFJH_04580 0.11 +0.1
893,535 - OLJFJH_04580 0.18 +0.5
893,586 + OLJFJH_04580 0.24 -0.3
893,588 + OLJFJH_04580 0.25 -0.4
893,588 + OLJFJH_04580 0.25 +1.0
893,588 + OLJFJH_04580 0.25 -0.3
893,588 + OLJFJH_04580 0.25 -0.7
893,588 + OLJFJH_04580 0.25 -2.2
893,588 + OLJFJH_04580 0.25 -0.2
893,589 - OLJFJH_04580 0.25 -0.5
893,592 + OLJFJH_04580 0.25 -0.1
893,592 + OLJFJH_04580 0.25 -0.6
893,592 + OLJFJH_04580 0.25 -0.5
893,592 + OLJFJH_04580 0.25 -0.5
893,592 + OLJFJH_04580 0.25 -0.6
893,593 - OLJFJH_04580 0.25 -0.4
893,593 - OLJFJH_04580 0.25 -0.0
893,593 - OLJFJH_04580 0.25 -0.2
893,597 + OLJFJH_04580 0.26 +0.7
893,598 - OLJFJH_04580 0.26 +0.1
893,612 + OLJFJH_04580 0.28 -0.9
893,612 + OLJFJH_04580 0.28 -1.0
893,613 - OLJFJH_04580 0.28 -0.1
893,695 - OLJFJH_04580 0.38 +0.2
893,695 - OLJFJH_04580 0.38 -0.5
893,695 - OLJFJH_04580 0.38 -0.8
893,874 + OLJFJH_04580 0.59 -0.1
893,958 - OLJFJH_04580 0.70 -0.7
894,123 + OLJFJH_04580 0.90 -0.9
894,402 + +0.4
894,403 - +0.1
894,419 + -0.6
894,626 + OLJFJH_04585 0.47 +1.0
894,626 + OLJFJH_04585 0.47 +0.2
894,626 + OLJFJH_04585 0.47 -0.7
894,626 + OLJFJH_04585 0.47 -0.0
894,626 + OLJFJH_04585 0.47 +0.2
894,626 + OLJFJH_04585 0.47 +0.3
894,626 + OLJFJH_04585 0.47 -0.7
894,626 + OLJFJH_04585 0.47 +0.3
894,626 + OLJFJH_04585 0.47 -0.3
894,626 + OLJFJH_04585 0.47 +0.1
894,626 + OLJFJH_04585 0.47 -0.7
894,626 + OLJFJH_04585 0.47 -0.2
894,626 + OLJFJH_04585 0.47 -1.1
894,626 + OLJFJH_04585 0.47 -0.4
894,626 + OLJFJH_04585 0.47 -1.0
894,626 + OLJFJH_04585 0.47 +1.9
894,626 + OLJFJH_04585 0.47 -0.7
894,626 + OLJFJH_04585 0.47 +0.7
894,626 + OLJFJH_04585 0.47 -0.2
894,627 - OLJFJH_04585 0.47 +0.7
894,627 - OLJFJH_04585 0.47 +1.0
894,627 - OLJFJH_04585 0.47 -0.2
894,627 - OLJFJH_04585 0.47 +0.2
894,627 - OLJFJH_04585 0.47 +0.7
894,627 - OLJFJH_04585 0.47 -0.1
894,627 - OLJFJH_04585 0.47 +1.8
894,627 - OLJFJH_04585 0.47 -0.4
894,627 - OLJFJH_04585 0.47 +0.2
894,627 - OLJFJH_04585 0.47 -0.5
894,627 - OLJFJH_04585 0.47 +0.4
894,627 - OLJFJH_04585 0.47 +3.3
894,628 + OLJFJH_04585 0.47 +0.3
894,629 - OLJFJH_04585 0.48 -0.1
894,636 + OLJFJH_04585 0.49 -0.6
894,637 - OLJFJH_04585 0.49 -0.5
894,686 - OLJFJH_04585 0.58 -0.4
894,686 - OLJFJH_04585 0.58 -0.3
894,771 + OLJFJH_04585 0.75 -0.3
894,774 + OLJFJH_04585 0.75 +0.5
894,774 + OLJFJH_04585 0.75 -0.2
894,774 + OLJFJH_04585 0.75 +1.1
894,775 - OLJFJH_04585 0.75 +2.2
894,775 - OLJFJH_04585 0.75 -0.7
894,775 - OLJFJH_04585 0.75 +0.7
894,775 - OLJFJH_04585 0.75 -0.4
894,823 + OLJFJH_04585 0.85 +0.8
894,823 + OLJFJH_04585 0.85 -0.3
894,824 - OLJFJH_04585 0.85 +0.1
894,824 - OLJFJH_04585 0.85 -0.4
894,825 + OLJFJH_04585 0.85 +0.5
894,825 + OLJFJH_04585 0.85 -1.7
894,826 - OLJFJH_04585 0.85 -0.6
894,850 + OLJFJH_04585 0.90 -0.1
894,851 - -0.3
894,851 - -0.2
894,874 - -0.6
894,918 + +0.3
894,919 - -0.6
894,919 - +0.1
894,919 - +0.4
894,938 + -1.0
894,947 - -1.3
894,947 - -0.2
894,950 - +1.3
895,017 + +1.1
895,017 + -0.5
895,018 - +0.2
895,018 - +0.1
895,018 - -0.2
895,024 - +0.9

Or see this region's nucleotide sequence