Experiment: FE-G2T (Control flower group 2, top)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04475 and OLJFJH_04480 are separated by 742 nucleotides OLJFJH_04480 and OLJFJH_04485 are separated by 21 nucleotides OLJFJH_04485 and OLJFJH_04490 are separated by 16 nucleotides
OLJFJH_04475: OLJFJH_04475 - LuxR family transcriptional regulator, at 869,408 to 870,007
_04475
OLJFJH_04480: OLJFJH_04480 - D-amino-acid oxidase, at 870,750 to 872,042
_04480
OLJFJH_04485: OLJFJH_04485 - Enamine/imine deaminase, at 872,064 to 872,486
_04485
OLJFJH_04490: OLJFJH_04490 - ornithine cyclodeaminase, at 872,503 to 873,642
_04490
Position (kb) 870
871
872
873 Strain fitness (log2 ratio) -2
-1
0
1 at 869.785 kb on - strand, within OLJFJH_04475 at 870.239 kb on - strand at 870.248 kb on - strand at 870.248 kb on - strand at 870.392 kb on + strand at 870.484 kb on + strand at 870.487 kb on + strand at 870.522 kb on - strand at 870.533 kb on + strand at 870.537 kb on + strand at 870.538 kb on - strand at 870.538 kb on - strand at 870.538 kb on - strand at 870.538 kb on - strand at 870.541 kb on - strand at 870.639 kb on + strand at 870.751 kb on + strand at 870.992 kb on + strand, within OLJFJH_04480 at 871.241 kb on + strand, within OLJFJH_04480 at 871.242 kb on - strand, within OLJFJH_04480 at 871.319 kb on + strand, within OLJFJH_04480 at 871.320 kb on - strand, within OLJFJH_04480 at 871.342 kb on - strand, within OLJFJH_04480 at 871.458 kb on + strand, within OLJFJH_04480 at 871.458 kb on + strand, within OLJFJH_04480 at 871.459 kb on - strand, within OLJFJH_04480 at 871.459 kb on - strand, within OLJFJH_04480 at 871.459 kb on - strand, within OLJFJH_04480 at 871.459 kb on - strand, within OLJFJH_04480 at 871.488 kb on + strand, within OLJFJH_04480 at 871.489 kb on - strand, within OLJFJH_04480 at 871.489 kb on - strand, within OLJFJH_04480 at 871.586 kb on + strand, within OLJFJH_04480 at 871.650 kb on + strand, within OLJFJH_04480 at 871.734 kb on - strand, within OLJFJH_04480 at 871.734 kb on - strand, within OLJFJH_04480 at 871.769 kb on - strand, within OLJFJH_04480 at 871.923 kb on - strand at 871.926 kb on - strand at 871.926 kb on - strand at 871.926 kb on - strand at 872.042 kb on + strand at 872.042 kb on + strand at 872.042 kb on + strand at 872.043 kb on - strand at 872.043 kb on - strand at 872.043 kb on - strand at 872.138 kb on + strand, within OLJFJH_04485 at 872.138 kb on + strand, within OLJFJH_04485 at 872.138 kb on + strand, within OLJFJH_04485 at 872.138 kb on + strand, within OLJFJH_04485 at 872.140 kb on + strand, within OLJFJH_04485 at 872.229 kb on + strand, within OLJFJH_04485 at 872.229 kb on + strand, within OLJFJH_04485 at 872.250 kb on - strand, within OLJFJH_04485 at 872.387 kb on + strand, within OLJFJH_04485 at 872.387 kb on + strand, within OLJFJH_04485 at 872.391 kb on - strand, within OLJFJH_04485 at 872.423 kb on + strand, within OLJFJH_04485 at 872.424 kb on - strand, within OLJFJH_04485 at 872.607 kb on + strand at 872.622 kb on + strand, within OLJFJH_04490 at 872.622 kb on + strand, within OLJFJH_04490 at 872.623 kb on - strand, within OLJFJH_04490 at 872.623 kb on - strand, within OLJFJH_04490 at 872.730 kb on + strand, within OLJFJH_04490 at 872.798 kb on + strand, within OLJFJH_04490 at 872.957 kb on + strand, within OLJFJH_04490 at 872.957 kb on + strand, within OLJFJH_04490 at 872.958 kb on - strand, within OLJFJH_04490 at 873.018 kb on + strand, within OLJFJH_04490 at 873.018 kb on + strand, within OLJFJH_04490 at 873.019 kb on - strand, within OLJFJH_04490
Per-strain Table
Position Strand Gene LocusTag Fraction FE-G2T (Control flower group 2, top) remove 869,785 - OLJFJH_04475 0.63 -0.8 870,239 - +0.5 870,248 - +0.3 870,248 - +0.4 870,392 + +0.5 870,484 + +1.2 870,487 + +0.1 870,522 - -0.1 870,533 + +0.3 870,537 + +0.2 870,538 - -0.1 870,538 - +0.1 870,538 - -0.4 870,538 - -0.3 870,541 - +0.8 870,639 + +0.3 870,751 + +0.3 870,992 + OLJFJH_04480 0.19 -0.7 871,241 + OLJFJH_04480 0.38 -2.0 871,242 - OLJFJH_04480 0.38 -1.1 871,319 + OLJFJH_04480 0.44 -0.6 871,320 - OLJFJH_04480 0.44 +0.3 871,342 - OLJFJH_04480 0.46 -0.3 871,458 + OLJFJH_04480 0.55 -0.4 871,458 + OLJFJH_04480 0.55 -0.4 871,459 - OLJFJH_04480 0.55 +0.2 871,459 - OLJFJH_04480 0.55 -1.6 871,459 - OLJFJH_04480 0.55 +0.2 871,459 - OLJFJH_04480 0.55 -1.5 871,488 + OLJFJH_04480 0.57 -0.8 871,489 - OLJFJH_04480 0.57 +0.1 871,489 - OLJFJH_04480 0.57 -0.3 871,586 + OLJFJH_04480 0.65 -0.4 871,650 + OLJFJH_04480 0.70 -0.9 871,734 - OLJFJH_04480 0.76 -0.3 871,734 - OLJFJH_04480 0.76 +0.1 871,769 - OLJFJH_04480 0.79 -0.0 871,923 - -0.3 871,926 - -0.4 871,926 - -0.6 871,926 - -0.4 872,042 + -0.8 872,042 + +0.2 872,042 + -0.5 872,043 - -0.2 872,043 - -0.8 872,043 - -0.5 872,138 + OLJFJH_04485 0.17 -0.5 872,138 + OLJFJH_04485 0.17 +1.2 872,138 + OLJFJH_04485 0.17 -0.4 872,138 + OLJFJH_04485 0.17 -0.9 872,140 + OLJFJH_04485 0.18 +0.3 872,229 + OLJFJH_04485 0.39 -0.4 872,229 + OLJFJH_04485 0.39 -0.0 872,250 - OLJFJH_04485 0.44 -0.2 872,387 + OLJFJH_04485 0.76 +0.2 872,387 + OLJFJH_04485 0.76 -1.8 872,391 - OLJFJH_04485 0.77 +0.4 872,423 + OLJFJH_04485 0.85 -0.0 872,424 - OLJFJH_04485 0.85 -0.9 872,607 + -0.7 872,622 + OLJFJH_04490 0.10 -0.8 872,622 + OLJFJH_04490 0.10 +0.2 872,623 - OLJFJH_04490 0.11 -0.4 872,623 - OLJFJH_04490 0.11 -0.6 872,730 + OLJFJH_04490 0.20 -0.6 872,798 + OLJFJH_04490 0.26 +0.0 872,957 + OLJFJH_04490 0.40 -0.7 872,957 + OLJFJH_04490 0.40 -0.3 872,958 - OLJFJH_04490 0.40 -0.1 873,018 + OLJFJH_04490 0.45 +0.5 873,018 + OLJFJH_04490 0.45 -0.5 873,019 - OLJFJH_04490 0.45 -0.6
Or see this region's nucleotide sequence