Strain Fitness in Erwinia amylovora T8 around OLJFJH_03175

Experiment: FE-G2T (Control flower group 2, top)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03165 and OLJFJH_03170 are separated by 224 nucleotidesOLJFJH_03170 and OLJFJH_03175 are separated by 23 nucleotidesOLJFJH_03175 and OLJFJH_03180 are separated by 4 nucleotides OLJFJH_03165: OLJFJH_03165 - Conserved uncharacterized protein, at 585,463 to 586,569 _03165 OLJFJH_03170: OLJFJH_03170 - hypothetical protein, at 586,794 to 587,225 _03170 OLJFJH_03175: OLJFJH_03175 - botulinum toxin, at 587,249 to 588,526 _03175 OLJFJH_03180: OLJFJH_03180 - Clostridium P-47 protein, at 588,531 to 590,144 _03180 Position (kb) 587 588 589Strain fitness (log2 ratio) -1 0 1 2 3at 586.278 kb on + strand, within OLJFJH_03165at 586.279 kb on - strand, within OLJFJH_03165at 586.281 kb on - strand, within OLJFJH_03165at 586.411 kb on - strand, within OLJFJH_03165at 586.493 kb on - strandat 586.928 kb on + strand, within OLJFJH_03170at 587.522 kb on + strand, within OLJFJH_03175at 587.522 kb on + strand, within OLJFJH_03175at 587.523 kb on - strand, within OLJFJH_03175at 587.562 kb on + strand, within OLJFJH_03175at 587.687 kb on - strand, within OLJFJH_03175at 587.705 kb on + strand, within OLJFJH_03175at 587.898 kb on - strand, within OLJFJH_03175at 587.936 kb on + strand, within OLJFJH_03175at 587.936 kb on + strand, within OLJFJH_03175at 587.950 kb on - strand, within OLJFJH_03175at 588.094 kb on + strand, within OLJFJH_03175at 588.139 kb on + strand, within OLJFJH_03175at 588.140 kb on - strand, within OLJFJH_03175at 588.184 kb on + strand, within OLJFJH_03175at 588.184 kb on + strand, within OLJFJH_03175at 588.184 kb on + strand, within OLJFJH_03175at 588.185 kb on - strand, within OLJFJH_03175at 588.203 kb on - strand, within OLJFJH_03175at 588.463 kb on + strandat 588.463 kb on + strandat 588.500 kb on + strandat 588.500 kb on + strandat 588.501 kb on - strandat 588.501 kb on - strandat 588.501 kb on - strandat 588.516 kb on + strandat 588.517 kb on - strandat 588.517 kb on - strandat 588.596 kb on + strandat 588.596 kb on + strandat 588.599 kb on + strandat 588.605 kb on + strandat 588.657 kb on - strandat 588.680 kb on + strandat 588.929 kb on - strand, within OLJFJH_03180at 589.029 kb on + strand, within OLJFJH_03180at 589.096 kb on - strand, within OLJFJH_03180at 589.100 kb on + strand, within OLJFJH_03180at 589.100 kb on + strand, within OLJFJH_03180at 589.101 kb on - strand, within OLJFJH_03180at 589.186 kb on + strand, within OLJFJH_03180at 589.186 kb on + strand, within OLJFJH_03180at 589.315 kb on - strand, within OLJFJH_03180

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Per-strain Table

Position Strand Gene LocusTag Fraction FE-G2T (Control flower group 2, top)
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586,278 + OLJFJH_03165 0.74 -0.4
586,279 - OLJFJH_03165 0.74 -0.3
586,281 - OLJFJH_03165 0.74 -0.6
586,411 - OLJFJH_03165 0.86 +0.3
586,493 - -0.2
586,928 + OLJFJH_03170 0.31 +0.3
587,522 + OLJFJH_03175 0.21 +0.5
587,522 + OLJFJH_03175 0.21 -0.1
587,523 - OLJFJH_03175 0.21 +2.9
587,562 + OLJFJH_03175 0.24 -0.5
587,687 - OLJFJH_03175 0.34 -1.5
587,705 + OLJFJH_03175 0.36 +0.0
587,898 - OLJFJH_03175 0.51 -0.3
587,936 + OLJFJH_03175 0.54 +0.0
587,936 + OLJFJH_03175 0.54 -0.3
587,950 - OLJFJH_03175 0.55 +0.5
588,094 + OLJFJH_03175 0.66 +2.7
588,139 + OLJFJH_03175 0.70 +2.0
588,140 - OLJFJH_03175 0.70 -1.7
588,184 + OLJFJH_03175 0.73 +0.9
588,184 + OLJFJH_03175 0.73 +0.8
588,184 + OLJFJH_03175 0.73 -0.6
588,185 - OLJFJH_03175 0.73 -0.4
588,203 - OLJFJH_03175 0.75 +0.1
588,463 + +0.3
588,463 + -0.4
588,500 + +1.3
588,500 + +0.3
588,501 - +0.0
588,501 - +0.6
588,501 - -0.0
588,516 + +0.2
588,517 - -0.8
588,517 - -0.5
588,596 + +0.2
588,596 + +0.6
588,599 + +0.7
588,605 + +1.0
588,657 - +0.6
588,680 + +0.1
588,929 - OLJFJH_03180 0.25 +0.5
589,029 + OLJFJH_03180 0.31 +0.0
589,096 - OLJFJH_03180 0.35 +0.1
589,100 + OLJFJH_03180 0.35 +0.5
589,100 + OLJFJH_03180 0.35 +1.8
589,101 - OLJFJH_03180 0.35 +1.3
589,186 + OLJFJH_03180 0.41 -0.0
589,186 + OLJFJH_03180 0.41 +0.7
589,315 - OLJFJH_03180 0.49 -0.3

Or see this region's nucleotide sequence