Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_14700

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_14690 and OKGIIK_14695 are separated by 50 nucleotidesOKGIIK_14695 and OKGIIK_14700 overlap by 4 nucleotidesOKGIIK_14700 and OKGIIK_14705 overlap by 4 nucleotides OKGIIK_14690: OKGIIK_14690 - Flavin-Reduct domain-containing protein, at 3,203,386 to 3,204,309 _14690 OKGIIK_14695: OKGIIK_14695 - Methyltransf-11 domain-containing protein, at 3,204,360 to 3,205,214 _14695 OKGIIK_14700: OKGIIK_14700 - Hexosyltransferase, at 3,205,211 to 3,206,317 _14700 OKGIIK_14705: OKGIIK_14705 - Glycosyl transferase, at 3,206,314 to 3,207,498 _14705 Position (kb) 3205 3206 3207Strain fitness (log2 ratio) -2 -1 0 1 2at 3204.271 kb on + strandat 3204.271 kb on + strandat 3204.272 kb on - strandat 3204.298 kb on - strandat 3204.307 kb on + strandat 3204.308 kb on - strandat 3204.308 kb on - strandat 3204.351 kb on + strandat 3204.351 kb on + strandat 3204.351 kb on + strandat 3204.351 kb on + strandat 3204.352 kb on - strandat 3204.352 kb on - strandat 3204.352 kb on - strandat 3204.352 kb on - strandat 3204.361 kb on + strandat 3204.361 kb on + strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.362 kb on - strandat 3204.424 kb on + strandat 3204.424 kb on + strandat 3204.444 kb on - strandat 3204.444 kb on - strandat 3204.484 kb on + strand, within OKGIIK_14695at 3204.484 kb on + strand, within OKGIIK_14695at 3204.484 kb on + strand, within OKGIIK_14695at 3204.484 kb on + strand, within OKGIIK_14695at 3204.485 kb on - strand, within OKGIIK_14695at 3204.485 kb on - strand, within OKGIIK_14695at 3204.485 kb on - strand, within OKGIIK_14695at 3204.485 kb on - strand, within OKGIIK_14695at 3204.485 kb on - strand, within OKGIIK_14695at 3204.485 kb on - strand, within OKGIIK_14695at 3204.485 kb on - strand, within OKGIIK_14695at 3204.535 kb on + strand, within OKGIIK_14695at 3204.535 kb on + strand, within OKGIIK_14695at 3204.536 kb on - strand, within OKGIIK_14695at 3204.685 kb on + strand, within OKGIIK_14695at 3204.685 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.739 kb on + strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3204.740 kb on - strand, within OKGIIK_14695at 3205.148 kb on - strandat 3205.235 kb on + strandat 3205.235 kb on + strandat 3205.235 kb on + strandat 3205.235 kb on + strandat 3205.235 kb on + strandat 3205.235 kb on + strandat 3205.236 kb on - strandat 3205.236 kb on - strandat 3205.239 kb on + strandat 3205.239 kb on + strandat 3205.239 kb on + strandat 3205.240 kb on - strandat 3205.240 kb on - strandat 3205.240 kb on - strandat 3205.956 kb on + strand, within OKGIIK_14700at 3205.956 kb on + strand, within OKGIIK_14700at 3205.956 kb on + strand, within OKGIIK_14700at 3205.957 kb on - strand, within OKGIIK_14700at 3206.237 kb on + strandat 3206.237 kb on + strandat 3206.238 kb on - strandat 3206.354 kb on + strandat 3206.354 kb on + strandat 3206.355 kb on - strandat 3206.592 kb on - strand, within OKGIIK_14705at 3206.804 kb on - strand, within OKGIIK_14705at 3207.162 kb on + strand, within OKGIIK_14705at 3207.162 kb on + strand, within OKGIIK_14705at 3207.162 kb on + strand, within OKGIIK_14705at 3207.163 kb on - strand, within OKGIIK_14705at 3207.163 kb on - strand, within OKGIIK_14705at 3207.163 kb on - strand, within OKGIIK_14705at 3207.251 kb on + strand, within OKGIIK_14705at 3207.251 kb on + strand, within OKGIIK_14705

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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3,204,271 + +1.1
3,204,271 + -1.9
3,204,272 - -1.0
3,204,298 - -0.5
3,204,307 + -0.4
3,204,308 - +0.5
3,204,308 - -0.8
3,204,351 + -2.3
3,204,351 + -2.1
3,204,351 + +0.1
3,204,351 + +0.5
3,204,352 - +0.3
3,204,352 - +0.6
3,204,352 - +0.3
3,204,352 - -0.0
3,204,361 + -1.1
3,204,361 + +0.7
3,204,362 - +1.1
3,204,362 - -0.2
3,204,362 - +2.1
3,204,362 - -0.5
3,204,362 - -0.3
3,204,362 - -1.4
3,204,424 + +0.6
3,204,424 + +0.9
3,204,444 - +0.3
3,204,444 - +0.1
3,204,484 + OKGIIK_14695 0.15 +0.9
3,204,484 + OKGIIK_14695 0.15 +0.7
3,204,484 + OKGIIK_14695 0.15 -0.2
3,204,484 + OKGIIK_14695 0.15 +0.3
3,204,485 - OKGIIK_14695 0.15 -0.2
3,204,485 - OKGIIK_14695 0.15 -1.5
3,204,485 - OKGIIK_14695 0.15 -1.0
3,204,485 - OKGIIK_14695 0.15 +0.5
3,204,485 - OKGIIK_14695 0.15 +0.6
3,204,485 - OKGIIK_14695 0.15 +0.2
3,204,485 - OKGIIK_14695 0.15 -0.7
3,204,535 + OKGIIK_14695 0.20 +1.6
3,204,535 + OKGIIK_14695 0.20 -1.7
3,204,536 - OKGIIK_14695 0.21 -0.8
3,204,685 + OKGIIK_14695 0.38 -0.4
3,204,685 + OKGIIK_14695 0.38 +0.2
3,204,739 + OKGIIK_14695 0.44 +0.6
3,204,739 + OKGIIK_14695 0.44 +0.6
3,204,739 + OKGIIK_14695 0.44 -2.3
3,204,739 + OKGIIK_14695 0.44 -0.1
3,204,739 + OKGIIK_14695 0.44 -1.5
3,204,739 + OKGIIK_14695 0.44 -0.1
3,204,739 + OKGIIK_14695 0.44 -0.1
3,204,739 + OKGIIK_14695 0.44 +0.6
3,204,739 + OKGIIK_14695 0.44 +0.1
3,204,739 + OKGIIK_14695 0.44 -0.0
3,204,739 + OKGIIK_14695 0.44 -1.3
3,204,739 + OKGIIK_14695 0.44 +1.3
3,204,739 + OKGIIK_14695 0.44 -0.7
3,204,739 + OKGIIK_14695 0.44 +0.2
3,204,739 + OKGIIK_14695 0.44 +0.3
3,204,739 + OKGIIK_14695 0.44 -0.4
3,204,739 + OKGIIK_14695 0.44 +1.3
3,204,740 - OKGIIK_14695 0.44 +0.1
3,204,740 - OKGIIK_14695 0.44 +0.2
3,204,740 - OKGIIK_14695 0.44 -2.0
3,204,740 - OKGIIK_14695 0.44 -0.3
3,204,740 - OKGIIK_14695 0.44 -1.0
3,204,740 - OKGIIK_14695 0.44 +0.9
3,204,740 - OKGIIK_14695 0.44 -1.9
3,204,740 - OKGIIK_14695 0.44 -2.7
3,204,740 - OKGIIK_14695 0.44 +1.3
3,204,740 - OKGIIK_14695 0.44 -2.0
3,204,740 - OKGIIK_14695 0.44 +0.9
3,204,740 - OKGIIK_14695 0.44 -0.5
3,205,148 - -0.2
3,205,235 + +0.5
3,205,235 + +0.0
3,205,235 + +0.3
3,205,235 + -1.1
3,205,235 + +0.3
3,205,235 + +0.3
3,205,236 - -0.8
3,205,236 - -0.0
3,205,239 + -0.3
3,205,239 + +0.2
3,205,239 + +0.6
3,205,240 - -0.7
3,205,240 - -2.0
3,205,240 - -1.1
3,205,956 + OKGIIK_14700 0.67 +0.2
3,205,956 + OKGIIK_14700 0.67 -0.8
3,205,956 + OKGIIK_14700 0.67 -0.2
3,205,957 - OKGIIK_14700 0.67 +0.2
3,206,237 + +0.6
3,206,237 + +0.2
3,206,238 - +0.3
3,206,354 + -0.5
3,206,354 + +0.1
3,206,355 - -1.8
3,206,592 - OKGIIK_14705 0.23 -0.2
3,206,804 - OKGIIK_14705 0.41 -1.5
3,207,162 + OKGIIK_14705 0.72 -2.3
3,207,162 + OKGIIK_14705 0.72 -0.0
3,207,162 + OKGIIK_14705 0.72 +0.3
3,207,163 - OKGIIK_14705 0.72 +0.7
3,207,163 - OKGIIK_14705 0.72 -1.3
3,207,163 - OKGIIK_14705 0.72 -0.8
3,207,251 + OKGIIK_14705 0.79 +0.7
3,207,251 + OKGIIK_14705 0.79 +0.5

Or see this region's nucleotide sequence