Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13265

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_13255 and ubiJ are separated by 122 nucleotidesubiJ and ubiB overlap by 4 nucleotidesubiB and OKGIIK_13270 are separated by 126 nucleotidesOKGIIK_13270 and arfB are separated by 96 nucleotides OKGIIK_13255: OKGIIK_13255 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 2,861,237 to 2,861,704 _13255 OKGIIK_13260: ubiJ - sterol-binding protein, at 2,861,827 to 2,862,477 ubiJ OKGIIK_13265: ubiB - ubiquinone biosynthesis regulatory protein kinase UbiB, at 2,862,474 to 2,864,123 ubiB OKGIIK_13270: OKGIIK_13270 - pseudouridylate synthase, at 2,864,250 to 2,864,966 _13270 OKGIIK_13275: arfB - aminoacyl-tRNA hydrolase, at 2,865,063 to 2,865,485 arfB Position (kb) 2862 2863 2864 2865Strain fitness (log2 ratio) -2 -1 0 1at 2861.661 kb on - strandat 2861.661 kb on - strandat 2861.703 kb on - strandat 2861.749 kb on + strandat 2861.749 kb on + strandat 2861.750 kb on - strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.793 kb on + strandat 2861.815 kb on + strandat 2861.815 kb on + strandat 2861.815 kb on + strandat 2861.816 kb on - strandat 2864.149 kb on - strandat 2864.149 kb on - strandat 2864.149 kb on - strandat 2864.391 kb on + strand, within OKGIIK_13270at 2864.391 kb on + strand, within OKGIIK_13270at 2864.392 kb on - strand, within OKGIIK_13270at 2864.505 kb on + strand, within OKGIIK_13270at 2864.505 kb on + strand, within OKGIIK_13270at 2864.505 kb on + strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.506 kb on - strand, within OKGIIK_13270at 2864.556 kb on + strand, within OKGIIK_13270at 2864.557 kb on - strand, within OKGIIK_13270at 2864.611 kb on - strand, within OKGIIK_13270at 2864.793 kb on + strand, within OKGIIK_13270at 2864.793 kb on + strand, within OKGIIK_13270at 2864.793 kb on + strand, within OKGIIK_13270at 2864.793 kb on + strand, within OKGIIK_13270at 2864.794 kb on - strand, within OKGIIK_13270at 2864.794 kb on - strand, within OKGIIK_13270at 2864.794 kb on - strand, within OKGIIK_13270at 2864.905 kb on - strandat 2865.050 kb on + strandat 2865.050 kb on + strandat 2865.050 kb on + strandat 2865.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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2,861,661 - +0.1
2,861,661 - +0.1
2,861,703 - +1.4
2,861,749 + +0.5
2,861,749 + -1.6
2,861,750 - -1.8
2,861,793 + -0.1
2,861,793 + -1.2
2,861,793 + -1.6
2,861,793 + +0.5
2,861,793 + +0.0
2,861,793 + +0.4
2,861,793 + -0.9
2,861,793 + -0.3
2,861,815 + +1.0
2,861,815 + +0.6
2,861,815 + +1.6
2,861,816 - +0.8
2,864,149 - -0.0
2,864,149 - +1.0
2,864,149 - +1.1
2,864,391 + OKGIIK_13270 0.20 -1.5
2,864,391 + OKGIIK_13270 0.20 +0.0
2,864,392 - OKGIIK_13270 0.20 -0.2
2,864,505 + OKGIIK_13270 0.36 +0.4
2,864,505 + OKGIIK_13270 0.36 +0.5
2,864,505 + OKGIIK_13270 0.36 -0.3
2,864,506 - OKGIIK_13270 0.36 +0.4
2,864,506 - OKGIIK_13270 0.36 +1.0
2,864,506 - OKGIIK_13270 0.36 +0.2
2,864,506 - OKGIIK_13270 0.36 -0.5
2,864,506 - OKGIIK_13270 0.36 +0.7
2,864,506 - OKGIIK_13270 0.36 -0.4
2,864,556 + OKGIIK_13270 0.43 +0.6
2,864,557 - OKGIIK_13270 0.43 -1.1
2,864,611 - OKGIIK_13270 0.50 -0.3
2,864,793 + OKGIIK_13270 0.76 +0.2
2,864,793 + OKGIIK_13270 0.76 -0.6
2,864,793 + OKGIIK_13270 0.76 -0.8
2,864,793 + OKGIIK_13270 0.76 +1.2
2,864,794 - OKGIIK_13270 0.76 +0.2
2,864,794 - OKGIIK_13270 0.76 -0.1
2,864,794 - OKGIIK_13270 0.76 -0.0
2,864,905 - +0.7
2,865,050 + -0.9
2,865,050 + -1.4
2,865,050 + -1.8
2,865,051 - -0.2

Or see this region's nucleotide sequence