Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11265

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjjB and ybbJ overlap by 4 nucleotidesybbJ and OKGIIK_11265 are separated by 54 nucleotidesOKGIIK_11265 and hflC are separated by 86 nucleotides OKGIIK_11255: yjjB - Putative threonine/serine exporter, at 2,412,629 to 2,413,909 yjjB OKGIIK_11260: ybbJ - Membrane protein implicated in regulation of membrane protease activity, at 2,413,906 to 2,414,355 ybbJ OKGIIK_11265: OKGIIK_11265 - DNA (Cytosine-5-)-methyltransferase, at 2,414,410 to 2,414,766 _11265 OKGIIK_11270: hflC - Regulator of protease activity HflC, stomatin/prohibitin superfamily, at 2,414,853 to 2,415,794 hflC Position (kb) 2414 2415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2413.488 kb on + strand, within yjjBat 2413.488 kb on + strand, within yjjBat 2413.489 kb on - strand, within yjjBat 2413.489 kb on - strand, within yjjBat 2413.489 kb on - strand, within yjjBat 2413.723 kb on + strand, within yjjBat 2413.809 kb on + strandat 2413.809 kb on + strandat 2413.810 kb on - strandat 2413.810 kb on - strandat 2413.810 kb on - strandat 2414.057 kb on + strand, within ybbJat 2414.058 kb on - strand, within ybbJat 2414.147 kb on + strand, within ybbJat 2414.274 kb on - strand, within ybbJat 2414.330 kb on + strandat 2414.330 kb on + strandat 2414.330 kb on + strandat 2414.330 kb on + strandat 2414.330 kb on + strandat 2414.330 kb on + strandat 2414.330 kb on + strandat 2414.330 kb on + strandat 2414.330 kb on + strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.331 kb on - strandat 2414.488 kb on + strand, within OKGIIK_11265at 2414.488 kb on + strand, within OKGIIK_11265at 2414.488 kb on + strand, within OKGIIK_11265at 2414.488 kb on + strand, within OKGIIK_11265at 2414.488 kb on + strand, within OKGIIK_11265at 2414.488 kb on + strand, within OKGIIK_11265at 2414.489 kb on - strand, within OKGIIK_11265at 2414.489 kb on - strand, within OKGIIK_11265at 2414.489 kb on - strand, within OKGIIK_11265at 2414.489 kb on - strand, within OKGIIK_11265at 2414.489 kb on - strand, within OKGIIK_11265at 2414.559 kb on - strand, within OKGIIK_11265at 2414.559 kb on - strand, within OKGIIK_11265at 2414.559 kb on - strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.636 kb on + strand, within OKGIIK_11265at 2414.637 kb on - strand, within OKGIIK_11265at 2414.637 kb on - strand, within OKGIIK_11265at 2414.637 kb on - strand, within OKGIIK_11265at 2414.637 kb on - strand, within OKGIIK_11265at 2414.637 kb on - strand, within OKGIIK_11265at 2414.699 kb on + strand, within OKGIIK_11265at 2414.700 kb on - strand, within OKGIIK_11265at 2414.700 kb on - strand, within OKGIIK_11265at 2414.700 kb on - strand, within OKGIIK_11265at 2414.700 kb on - strand, within OKGIIK_11265at 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.804 kb on + strandat 2414.805 kb on - strandat 2414.805 kb on - strandat 2414.805 kb on - strandat 2414.805 kb on - strandat 2414.805 kb on - strandat 2414.805 kb on - strandat 2414.805 kb on - strandat 2415.016 kb on + strand, within hflCat 2415.016 kb on + strand, within hflCat 2415.016 kb on + strand, within hflCat 2415.016 kb on + strand, within hflCat 2415.016 kb on + strand, within hflCat 2415.016 kb on + strand, within hflCat 2415.016 kb on + strand, within hflCat 2415.016 kb on + strand, within hflCat 2415.016 kb on + strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.017 kb on - strand, within hflCat 2415.034 kb on + strand, within hflCat 2415.034 kb on + strand, within hflCat 2415.034 kb on + strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.035 kb on - strand, within hflCat 2415.496 kb on + strand, within hflCat 2415.496 kb on + strand, within hflCat 2415.496 kb on + strand, within hflCat 2415.496 kb on + strand, within hflCat 2415.496 kb on + strand, within hflCat 2415.496 kb on + strand, within hflCat 2415.496 kb on + strand, within hflCat 2415.496 kb on + strand, within hflCat 2415.497 kb on - strand, within hflCat 2415.497 kb on - strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.526 kb on + strand, within hflCat 2415.527 kb on - strand, within hflCat 2415.527 kb on - strand, within hflCat 2415.527 kb on - strand, within hflCat 2415.527 kb on - strand, within hflCat 2415.527 kb on - strand, within hflCat 2415.637 kb on + strand, within hflCat 2415.637 kb on + strand, within hflCat 2415.638 kb on - strand, within hflCat 2415.638 kb on - strand, within hflCat 2415.638 kb on - strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.682 kb on + strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflCat 2415.683 kb on - strand, within hflC

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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2,413,488 + yjjB OKGIIK_11255 0.67 -0.6
2,413,488 + yjjB OKGIIK_11255 0.67 -2.2
2,413,489 - yjjB OKGIIK_11255 0.67 -0.2
2,413,489 - yjjB OKGIIK_11255 0.67 -1.2
2,413,489 - yjjB OKGIIK_11255 0.67 +1.0
2,413,723 + yjjB OKGIIK_11255 0.85 +0.4
2,413,809 + +0.5
2,413,809 + -0.2
2,413,810 - +0.4
2,413,810 - -0.4
2,413,810 - -0.4
2,414,057 + ybbJ OKGIIK_11260 0.34 +1.1
2,414,058 - ybbJ OKGIIK_11260 0.34 -0.5
2,414,147 + ybbJ OKGIIK_11260 0.54 +0.4
2,414,274 - ybbJ OKGIIK_11260 0.82 +0.4
2,414,330 + +1.4
2,414,330 + +1.1
2,414,330 + -0.6
2,414,330 + +1.3
2,414,330 + -0.8
2,414,330 + -1.1
2,414,330 + -0.5
2,414,330 + -0.1
2,414,330 + +0.3
2,414,331 - +2.1
2,414,331 - +1.5
2,414,331 - +0.4
2,414,331 - +0.3
2,414,331 - -0.7
2,414,331 - +0.7
2,414,331 - +1.2
2,414,331 - -1.7
2,414,331 - +0.7
2,414,331 - +1.5
2,414,331 - +0.3
2,414,331 - -0.8
2,414,331 - -1.3
2,414,488 + OKGIIK_11265 0.22 -0.7
2,414,488 + OKGIIK_11265 0.22 -2.3
2,414,488 + OKGIIK_11265 0.22 -0.9
2,414,488 + OKGIIK_11265 0.22 +0.3
2,414,488 + OKGIIK_11265 0.22 +0.5
2,414,488 + OKGIIK_11265 0.22 +0.0
2,414,489 - OKGIIK_11265 0.22 +0.8
2,414,489 - OKGIIK_11265 0.22 -0.7
2,414,489 - OKGIIK_11265 0.22 +0.9
2,414,489 - OKGIIK_11265 0.22 +0.5
2,414,489 - OKGIIK_11265 0.22 -0.5
2,414,559 - OKGIIK_11265 0.42 -0.7
2,414,559 - OKGIIK_11265 0.42 +0.5
2,414,559 - OKGIIK_11265 0.42 -0.8
2,414,636 + OKGIIK_11265 0.63 +0.8
2,414,636 + OKGIIK_11265 0.63 +1.2
2,414,636 + OKGIIK_11265 0.63 -0.4
2,414,636 + OKGIIK_11265 0.63 -0.3
2,414,636 + OKGIIK_11265 0.63 +1.2
2,414,636 + OKGIIK_11265 0.63 -0.1
2,414,636 + OKGIIK_11265 0.63 +1.7
2,414,636 + OKGIIK_11265 0.63 +0.6
2,414,636 + OKGIIK_11265 0.63 +0.0
2,414,636 + OKGIIK_11265 0.63 +0.8
2,414,636 + OKGIIK_11265 0.63 -0.5
2,414,636 + OKGIIK_11265 0.63 +0.2
2,414,637 - OKGIIK_11265 0.64 -0.8
2,414,637 - OKGIIK_11265 0.64 +0.9
2,414,637 - OKGIIK_11265 0.64 -0.3
2,414,637 - OKGIIK_11265 0.64 +0.5
2,414,637 - OKGIIK_11265 0.64 -0.3
2,414,699 + OKGIIK_11265 0.81 -0.2
2,414,700 - OKGIIK_11265 0.81 -0.8
2,414,700 - OKGIIK_11265 0.81 +0.2
2,414,700 - OKGIIK_11265 0.81 +1.0
2,414,700 - OKGIIK_11265 0.81 -0.8
2,414,804 + -1.1
2,414,804 + -0.2
2,414,804 + -0.4
2,414,804 + +1.5
2,414,804 + +0.3
2,414,804 + +0.7
2,414,804 + -0.4
2,414,804 + -1.9
2,414,804 + -0.8
2,414,804 + +0.1
2,414,805 - -0.9
2,414,805 - -0.7
2,414,805 - -1.1
2,414,805 - +0.5
2,414,805 - -2.6
2,414,805 - -0.8
2,414,805 - +1.5
2,415,016 + hflC OKGIIK_11270 0.17 -0.3
2,415,016 + hflC OKGIIK_11270 0.17 +0.9
2,415,016 + hflC OKGIIK_11270 0.17 +0.9
2,415,016 + hflC OKGIIK_11270 0.17 +0.6
2,415,016 + hflC OKGIIK_11270 0.17 -1.9
2,415,016 + hflC OKGIIK_11270 0.17 +1.7
2,415,016 + hflC OKGIIK_11270 0.17 +0.9
2,415,016 + hflC OKGIIK_11270 0.17 -0.1
2,415,016 + hflC OKGIIK_11270 0.17 -1.7
2,415,017 - hflC OKGIIK_11270 0.17 +0.5
2,415,017 - hflC OKGIIK_11270 0.17 -0.1
2,415,017 - hflC OKGIIK_11270 0.17 -1.5
2,415,017 - hflC OKGIIK_11270 0.17 +1.2
2,415,017 - hflC OKGIIK_11270 0.17 -0.8
2,415,017 - hflC OKGIIK_11270 0.17 -1.8
2,415,017 - hflC OKGIIK_11270 0.17 -0.5
2,415,017 - hflC OKGIIK_11270 0.17 -1.3
2,415,017 - hflC OKGIIK_11270 0.17 -0.8
2,415,017 - hflC OKGIIK_11270 0.17 +0.5
2,415,017 - hflC OKGIIK_11270 0.17 +1.5
2,415,017 - hflC OKGIIK_11270 0.17 +0.3
2,415,017 - hflC OKGIIK_11270 0.17 +0.8
2,415,034 + hflC OKGIIK_11270 0.19 -0.1
2,415,034 + hflC OKGIIK_11270 0.19 -0.2
2,415,034 + hflC OKGIIK_11270 0.19 -0.0
2,415,035 - hflC OKGIIK_11270 0.19 -2.1
2,415,035 - hflC OKGIIK_11270 0.19 -0.4
2,415,035 - hflC OKGIIK_11270 0.19 +0.7
2,415,035 - hflC OKGIIK_11270 0.19 +0.5
2,415,035 - hflC OKGIIK_11270 0.19 +0.0
2,415,035 - hflC OKGIIK_11270 0.19 -0.1
2,415,035 - hflC OKGIIK_11270 0.19 -0.9
2,415,035 - hflC OKGIIK_11270 0.19 -1.1
2,415,035 - hflC OKGIIK_11270 0.19 +0.1
2,415,496 + hflC OKGIIK_11270 0.68 +2.3
2,415,496 + hflC OKGIIK_11270 0.68 -0.4
2,415,496 + hflC OKGIIK_11270 0.68 +0.8
2,415,496 + hflC OKGIIK_11270 0.68 -0.1
2,415,496 + hflC OKGIIK_11270 0.68 +0.0
2,415,496 + hflC OKGIIK_11270 0.68 -0.6
2,415,496 + hflC OKGIIK_11270 0.68 +0.4
2,415,496 + hflC OKGIIK_11270 0.68 -1.5
2,415,497 - hflC OKGIIK_11270 0.68 +1.3
2,415,497 - hflC OKGIIK_11270 0.68 -2.9
2,415,526 + hflC OKGIIK_11270 0.71 +0.5
2,415,526 + hflC OKGIIK_11270 0.71 -0.9
2,415,526 + hflC OKGIIK_11270 0.71 -1.5
2,415,526 + hflC OKGIIK_11270 0.71 +0.1
2,415,526 + hflC OKGIIK_11270 0.71 -0.8
2,415,526 + hflC OKGIIK_11270 0.71 -1.9
2,415,526 + hflC OKGIIK_11270 0.71 -1.2
2,415,526 + hflC OKGIIK_11270 0.71 -1.3
2,415,526 + hflC OKGIIK_11270 0.71 +0.5
2,415,526 + hflC OKGIIK_11270 0.71 -1.3
2,415,526 + hflC OKGIIK_11270 0.71 -1.1
2,415,527 - hflC OKGIIK_11270 0.72 +0.5
2,415,527 - hflC OKGIIK_11270 0.72 -0.8
2,415,527 - hflC OKGIIK_11270 0.72 +0.3
2,415,527 - hflC OKGIIK_11270 0.72 -1.8
2,415,527 - hflC OKGIIK_11270 0.72 +0.5
2,415,637 + hflC OKGIIK_11270 0.83 -2.3
2,415,637 + hflC OKGIIK_11270 0.83 +0.6
2,415,638 - hflC OKGIIK_11270 0.83 +0.0
2,415,638 - hflC OKGIIK_11270 0.83 -0.9
2,415,638 - hflC OKGIIK_11270 0.83 +0.1
2,415,682 + hflC OKGIIK_11270 0.88 -1.0
2,415,682 + hflC OKGIIK_11270 0.88 -0.5
2,415,682 + hflC OKGIIK_11270 0.88 +0.7
2,415,682 + hflC OKGIIK_11270 0.88 +0.3
2,415,682 + hflC OKGIIK_11270 0.88 +1.3
2,415,682 + hflC OKGIIK_11270 0.88 -1.3
2,415,682 + hflC OKGIIK_11270 0.88 -0.5
2,415,682 + hflC OKGIIK_11270 0.88 -1.2
2,415,682 + hflC OKGIIK_11270 0.88 -0.1
2,415,683 - hflC OKGIIK_11270 0.88 +0.0
2,415,683 - hflC OKGIIK_11270 0.88 +0.8
2,415,683 - hflC OKGIIK_11270 0.88 +1.0
2,415,683 - hflC OKGIIK_11270 0.88 +0.4
2,415,683 - hflC OKGIIK_11270 0.88 -1.1
2,415,683 - hflC OKGIIK_11270 0.88 +0.5
2,415,683 - hflC OKGIIK_11270 0.88 +0.1
2,415,683 - hflC OKGIIK_11270 0.88 -0.7
2,415,683 - hflC OKGIIK_11270 0.88 -0.7
2,415,683 - hflC OKGIIK_11270 0.88 -1.7

Or see this region's nucleotide sequence