Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_02615 and OKGIIK_02620 are separated by 42 nucleotides OKGIIK_02620 and OKGIIK_02625 are separated by 108 nucleotides OKGIIK_02625 and flgM overlap by 4 nucleotides flgM and flgA are separated by 109 nucleotides
OKGIIK_02615: OKGIIK_02615 - Transmembrane protein 43, at 610,638 to 611,672
_02615
OKGIIK_02620: OKGIIK_02620 - Diguanylate phosphodiesterase, at 611,715 to 613,007
_02620
OKGIIK_02625: OKGIIK_02625 - Flagellar biosynthesis protein FlgN, at 613,116 to 613,562
_02625
OKGIIK_02630: flgM - flagellar biosynthesis anti-sigma factor FlgM, at 613,559 to 613,882
flgM
OKGIIK_02635: flgA - flagellar basal body P-ring formation protein FlgA, at 613,992 to 614,699
flgA
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 610.752 kb on + strand, within OKGIIK_02615 at 610.753 kb on - strand, within OKGIIK_02615 at 610.977 kb on + strand, within OKGIIK_02615 at 610.977 kb on + strand, within OKGIIK_02615 at 610.977 kb on + strand, within OKGIIK_02615 at 610.978 kb on - strand, within OKGIIK_02615 at 610.978 kb on - strand, within OKGIIK_02615 at 610.978 kb on - strand, within OKGIIK_02615 at 610.978 kb on - strand, within OKGIIK_02615 at 610.978 kb on - strand, within OKGIIK_02615 at 610.978 kb on - strand, within OKGIIK_02615 at 610.978 kb on - strand, within OKGIIK_02615 at 611.217 kb on + strand, within OKGIIK_02615 at 611.217 kb on + strand, within OKGIIK_02615 at 611.217 kb on + strand, within OKGIIK_02615 at 611.217 kb on + strand, within OKGIIK_02615 at 611.218 kb on - strand, within OKGIIK_02615 at 611.218 kb on - strand, within OKGIIK_02615 at 611.218 kb on - strand, within OKGIIK_02615 at 611.218 kb on - strand, within OKGIIK_02615 at 611.218 kb on - strand, within OKGIIK_02615 at 611.218 kb on - strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.367 kb on + strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.368 kb on - strand, within OKGIIK_02615 at 611.609 kb on - strand at 611.609 kb on - strand at 611.609 kb on - strand at 611.716 kb on + strand at 611.716 kb on + strand at 611.749 kb on + strand at 611.749 kb on + strand at 611.749 kb on + strand at 611.749 kb on + strand at 611.749 kb on + strand at 611.750 kb on - strand at 611.750 kb on - strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.782 kb on + strand at 611.783 kb on - strand at 611.783 kb on - strand at 611.783 kb on - strand at 611.783 kb on - strand at 611.783 kb on - strand at 611.783 kb on - strand at 612.202 kb on + strand, within OKGIIK_02620 at 612.202 kb on + strand, within OKGIIK_02620 at 612.202 kb on + strand, within OKGIIK_02620 at 612.202 kb on + strand, within OKGIIK_02620 at 612.202 kb on + strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.203 kb on - strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.232 kb on + strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.233 kb on - strand, within OKGIIK_02620 at 612.376 kb on + strand, within OKGIIK_02620 at 612.377 kb on - strand, within OKGIIK_02620 at 612.377 kb on - strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.421 kb on + strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.422 kb on - strand, within OKGIIK_02620 at 612.472 kb on + strand, within OKGIIK_02620 at 612.472 kb on + strand, within OKGIIK_02620 at 612.473 kb on - strand, within OKGIIK_02620 at 612.473 kb on - strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.534 kb on + strand, within OKGIIK_02620 at 612.535 kb on - strand, within OKGIIK_02620 at 612.535 kb on - strand, within OKGIIK_02620 at 612.535 kb on - strand, within OKGIIK_02620 at 612.535 kb on - strand, within OKGIIK_02620 at 612.670 kb on + strand, within OKGIIK_02620 at 612.671 kb on - strand, within OKGIIK_02620 at 612.771 kb on + strand, within OKGIIK_02620 at 612.772 kb on - strand, within OKGIIK_02620 at 612.772 kb on - strand, within OKGIIK_02620 at 612.866 kb on - strand, within OKGIIK_02620 at 612.866 kb on - strand, within OKGIIK_02620 at 612.940 kb on + strand at 612.940 kb on + strand at 612.940 kb on + strand at 612.940 kb on + strand at 612.940 kb on + strand at 612.940 kb on + strand at 612.941 kb on - strand at 612.941 kb on - strand at 612.941 kb on - strand at 612.941 kb on - strand at 612.941 kb on - strand at 612.999 kb on + strand at 612.999 kb on + strand at 612.999 kb on + strand at 612.999 kb on + strand at 613.000 kb on - strand at 613.000 kb on - strand at 613.028 kb on + strand at 613.065 kb on + strand at 613.065 kb on + strand at 613.065 kb on + strand at 613.066 kb on - strand at 613.066 kb on - strand at 613.066 kb on - strand at 613.066 kb on - strand at 613.066 kb on - strand at 613.174 kb on + strand, within OKGIIK_02625 at 613.174 kb on + strand, within OKGIIK_02625 at 613.174 kb on + strand, within OKGIIK_02625 at 613.175 kb on - strand, within OKGIIK_02625 at 613.175 kb on - strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.224 kb on + strand, within OKGIIK_02625 at 613.225 kb on - strand, within OKGIIK_02625 at 613.776 kb on - strand, within flgM at 613.913 kb on - strand at 613.913 kb on - strand at 613.913 kb on - strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.945 kb on + strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.946 kb on - strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.960 kb on + strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.961 kb on - strand at 613.962 kb on + strand at 613.962 kb on + strand at 613.962 kb on + strand at 613.963 kb on - strand at 613.963 kb on - strand at 613.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x remove 610,752 + OKGIIK_02615 0.11 +0.2 610,753 - OKGIIK_02615 0.11 -0.5 610,977 + OKGIIK_02615 0.33 -0.9 610,977 + OKGIIK_02615 0.33 -0.8 610,977 + OKGIIK_02615 0.33 -2.0 610,978 - OKGIIK_02615 0.33 +0.8 610,978 - OKGIIK_02615 0.33 -0.8 610,978 - OKGIIK_02615 0.33 -0.8 610,978 - OKGIIK_02615 0.33 -0.8 610,978 - OKGIIK_02615 0.33 -1.5 610,978 - OKGIIK_02615 0.33 -1.6 610,978 - OKGIIK_02615 0.33 -0.4 611,217 + OKGIIK_02615 0.56 +1.6 611,217 + OKGIIK_02615 0.56 -0.3 611,217 + OKGIIK_02615 0.56 +0.2 611,217 + OKGIIK_02615 0.56 +0.1 611,218 - OKGIIK_02615 0.56 +1.0 611,218 - OKGIIK_02615 0.56 -2.4 611,218 - OKGIIK_02615 0.56 -0.8 611,218 - OKGIIK_02615 0.56 -1.7 611,218 - OKGIIK_02615 0.56 +0.5 611,218 - OKGIIK_02615 0.56 +0.3 611,367 + OKGIIK_02615 0.70 -0.1 611,367 + OKGIIK_02615 0.70 -2.3 611,367 + OKGIIK_02615 0.70 +0.9 611,367 + OKGIIK_02615 0.70 -1.8 611,367 + OKGIIK_02615 0.70 +0.5 611,367 + OKGIIK_02615 0.70 +0.9 611,367 + OKGIIK_02615 0.70 +1.2 611,367 + OKGIIK_02615 0.70 -0.1 611,367 + OKGIIK_02615 0.70 -0.6 611,367 + OKGIIK_02615 0.70 -1.6 611,367 + OKGIIK_02615 0.70 +0.6 611,367 + OKGIIK_02615 0.70 +0.8 611,367 + OKGIIK_02615 0.70 +0.5 611,367 + OKGIIK_02615 0.70 -0.5 611,367 + OKGIIK_02615 0.70 -1.3 611,368 - OKGIIK_02615 0.71 -0.1 611,368 - OKGIIK_02615 0.71 -0.4 611,368 - OKGIIK_02615 0.71 -0.5 611,368 - OKGIIK_02615 0.71 -1.5 611,368 - OKGIIK_02615 0.71 +1.0 611,368 - OKGIIK_02615 0.71 +2.0 611,368 - OKGIIK_02615 0.71 +0.2 611,368 - OKGIIK_02615 0.71 +1.5 611,368 - OKGIIK_02615 0.71 -0.8 611,368 - OKGIIK_02615 0.71 +0.9 611,368 - OKGIIK_02615 0.71 -0.1 611,609 - +0.3 611,609 - +0.5 611,609 - +0.5 611,716 + +0.1 611,716 + +0.5 611,749 + -0.1 611,749 + +0.2 611,749 + -0.7 611,749 + -0.5 611,749 + +0.3 611,750 - -2.3 611,750 - +1.1 611,782 + -0.8 611,782 + +2.1 611,782 + +1.3 611,782 + -1.3 611,782 + -1.2 611,782 + +0.1 611,782 + -1.3 611,782 + -0.7 611,782 + -0.2 611,782 + +1.3 611,782 + -0.1 611,783 - +0.9 611,783 - -1.1 611,783 - -0.1 611,783 - -2.9 611,783 - -0.4 611,783 - +0.2 612,202 + OKGIIK_02620 0.38 +1.1 612,202 + OKGIIK_02620 0.38 +0.5 612,202 + OKGIIK_02620 0.38 -0.8 612,202 + OKGIIK_02620 0.38 +1.8 612,202 + OKGIIK_02620 0.38 +0.2 612,203 - OKGIIK_02620 0.38 -0.7 612,203 - OKGIIK_02620 0.38 -0.6 612,203 - OKGIIK_02620 0.38 +0.5 612,203 - OKGIIK_02620 0.38 +1.5 612,203 - OKGIIK_02620 0.38 -0.1 612,203 - OKGIIK_02620 0.38 +1.2 612,232 + OKGIIK_02620 0.40 +1.0 612,232 + OKGIIK_02620 0.40 +0.4 612,232 + OKGIIK_02620 0.40 +0.3 612,232 + OKGIIK_02620 0.40 -0.4 612,232 + OKGIIK_02620 0.40 -0.3 612,232 + OKGIIK_02620 0.40 +1.5 612,233 - OKGIIK_02620 0.40 +0.3 612,233 - OKGIIK_02620 0.40 -1.3 612,233 - OKGIIK_02620 0.40 +0.5 612,233 - OKGIIK_02620 0.40 +0.5 612,233 - OKGIIK_02620 0.40 +0.6 612,233 - OKGIIK_02620 0.40 -0.6 612,233 - OKGIIK_02620 0.40 -0.1 612,233 - OKGIIK_02620 0.40 -1.2 612,233 - OKGIIK_02620 0.40 -0.5 612,233 - OKGIIK_02620 0.40 +0.8 612,233 - OKGIIK_02620 0.40 +0.5 612,233 - OKGIIK_02620 0.40 +0.2 612,233 - OKGIIK_02620 0.40 -0.2 612,233 - OKGIIK_02620 0.40 -1.9 612,233 - OKGIIK_02620 0.40 -0.5 612,233 - OKGIIK_02620 0.40 -0.5 612,376 + OKGIIK_02620 0.51 +0.5 612,377 - OKGIIK_02620 0.51 +0.4 612,377 - OKGIIK_02620 0.51 +0.5 612,421 + OKGIIK_02620 0.55 -0.2 612,421 + OKGIIK_02620 0.55 +0.2 612,421 + OKGIIK_02620 0.55 +0.8 612,421 + OKGIIK_02620 0.55 +1.0 612,421 + OKGIIK_02620 0.55 +1.2 612,422 - OKGIIK_02620 0.55 -0.8 612,422 - OKGIIK_02620 0.55 -0.8 612,422 - OKGIIK_02620 0.55 +0.3 612,422 - OKGIIK_02620 0.55 +0.5 612,422 - OKGIIK_02620 0.55 -1.9 612,422 - OKGIIK_02620 0.55 +1.7 612,422 - OKGIIK_02620 0.55 -0.3 612,472 + OKGIIK_02620 0.59 +0.9 612,472 + OKGIIK_02620 0.59 -0.8 612,473 - OKGIIK_02620 0.59 -0.8 612,473 - OKGIIK_02620 0.59 +0.7 612,534 + OKGIIK_02620 0.63 +0.5 612,534 + OKGIIK_02620 0.63 -1.2 612,534 + OKGIIK_02620 0.63 +0.2 612,534 + OKGIIK_02620 0.63 +0.5 612,534 + OKGIIK_02620 0.63 -0.1 612,534 + OKGIIK_02620 0.63 -1.6 612,534 + OKGIIK_02620 0.63 +1.3 612,534 + OKGIIK_02620 0.63 -1.2 612,535 - OKGIIK_02620 0.63 -0.5 612,535 - OKGIIK_02620 0.63 +0.2 612,535 - OKGIIK_02620 0.63 -0.8 612,535 - OKGIIK_02620 0.63 -0.5 612,670 + OKGIIK_02620 0.74 -0.8 612,671 - OKGIIK_02620 0.74 +0.1 612,771 + OKGIIK_02620 0.82 -0.6 612,772 - OKGIIK_02620 0.82 +0.4 612,772 - OKGIIK_02620 0.82 +0.1 612,866 - OKGIIK_02620 0.89 +0.5 612,866 - OKGIIK_02620 0.89 -0.5 612,940 + -0.8 612,940 + +0.2 612,940 + -0.6 612,940 + +1.7 612,940 + -0.5 612,940 + +0.2 612,941 - +0.9 612,941 - +0.1 612,941 - +0.4 612,941 - +0.8 612,941 - +0.6 612,999 + +0.1 612,999 + -0.4 612,999 + +0.2 612,999 + +1.5 613,000 - -1.5 613,000 - -1.2 613,028 + +1.5 613,065 + -0.5 613,065 + -1.8 613,065 + -0.9 613,066 - -0.8 613,066 - +0.3 613,066 - -0.8 613,066 - +0.2 613,066 - -1.8 613,174 + OKGIIK_02625 0.13 -0.5 613,174 + OKGIIK_02625 0.13 -0.6 613,174 + OKGIIK_02625 0.13 -0.5 613,175 - OKGIIK_02625 0.13 +0.2 613,175 - OKGIIK_02625 0.13 -1.3 613,224 + OKGIIK_02625 0.24 -1.5 613,224 + OKGIIK_02625 0.24 -1.3 613,224 + OKGIIK_02625 0.24 -0.8 613,224 + OKGIIK_02625 0.24 -1.1 613,224 + OKGIIK_02625 0.24 -1.2 613,225 - OKGIIK_02625 0.24 -0.8 613,776 - flgM OKGIIK_02630 0.67 -3.0 613,913 - +1.8 613,913 - +0.1 613,913 - +0.0 613,945 + -0.1 613,945 + -0.5 613,945 + -0.9 613,945 + +0.2 613,945 + -0.3 613,946 - -0.8 613,946 - -1.3 613,946 - +0.9 613,960 + +1.0 613,960 + -0.7 613,960 + +1.1 613,960 + -1.6 613,960 + +1.0 613,960 + -0.5 613,960 + +0.9 613,960 + -3.6 613,960 + -1.6 613,960 + +0.5 613,960 + +0.7 613,960 + -0.1 613,960 + +0.6 613,960 + +0.9 613,960 + +0.3 613,960 + -0.1 613,960 + +0.4 613,960 + +1.5 613,960 + +0.9 613,960 + +0.7 613,960 + -0.6 613,961 - +2.5 613,961 - -0.4 613,961 - +0.8 613,961 - +1.9 613,961 - -2.2 613,961 - -0.3 613,961 - +0.9 613,961 - -1.3 613,961 - +1.1 613,961 - +1.1 613,961 - +0.3 613,961 - +0.4 613,961 - -1.8 613,961 - +0.0 613,961 - -1.6 613,961 - -1.1 613,961 - +1.2 613,962 + +0.7 613,962 + -2.3 613,962 + +0.4 613,963 - +0.7 613,963 - +0.5 613,963 - -0.9
Or see this region's nucleotide sequence