Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01865

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybgC and tolQ are separated by 39 nucleotidestolQ and tolR are separated by 13 nucleotidestolR and tolA overlap by 14 nucleotidestolA and tolB overlap by 4 nucleotides OKGIIK_01855: ybgC - tol-pal system-associated acyl-CoA thioesterase, at 430,654 to 431,073 ybgC OKGIIK_01860: tolQ - protein TolQ, at 431,113 to 431,799 tolQ OKGIIK_01865: tolR - protein TolR, at 431,813 to 432,277 tolR OKGIIK_01870: tolA - cell envelope integrity protein TolA, at 432,264 to 433,208 tolA OKGIIK_01875: tolB - Tol-Pal system beta propeller repeat protein TolB, at 433,205 to 434,536 tolB Position (kb) 431 432 433Strain fitness (log2 ratio) -2 -1 0 1at 430.935 kb on + strand, within ybgCat 430.935 kb on + strand, within ybgCat 430.935 kb on + strand, within ybgCat 430.936 kb on - strand, within ybgCat 430.936 kb on - strand, within ybgCat 432.298 kb on + strandat 432.298 kb on + strandat 432.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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430,935 + ybgC OKGIIK_01855 0.67 -1.8
430,935 + ybgC OKGIIK_01855 0.67 -1.4
430,935 + ybgC OKGIIK_01855 0.67 +0.3
430,936 - ybgC OKGIIK_01855 0.67 -0.8
430,936 - ybgC OKGIIK_01855 0.67 -0.0
432,298 + -1.1
432,298 + +0.2
432,299 - +0.6

Or see this region's nucleotide sequence