Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01650

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01640 and OKGIIK_01645 overlap by 4 nucleotidesOKGIIK_01645 and OKGIIK_01650 are separated by 63 nucleotidesOKGIIK_01650 and OKGIIK_01655 overlap by 4 nucleotides OKGIIK_01640: OKGIIK_01640 - Oxidoreductase, at 370,060 to 371,370 _01640 OKGIIK_01645: OKGIIK_01645 - Dihydrodipicolinate synthase family protein, at 371,367 to 372,272 _01645 OKGIIK_01650: OKGIIK_01650 - Ketoglutarate semialdehyde dehydrogenase, at 372,336 to 373,934 _01650 OKGIIK_01655: OKGIIK_01655 - X-Pro dipeptidase, at 373,931 to 375,133 _01655 Position (kb) 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.697 kb on + strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.698 kb on - strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.703 kb on + strand, within OKGIIK_01645at 371.704 kb on - strand, within OKGIIK_01645at 371.704 kb on - strand, within OKGIIK_01645at 371.704 kb on - strand, within OKGIIK_01645at 371.777 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.778 kb on + strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.779 kb on - strand, within OKGIIK_01645at 371.797 kb on - strand, within OKGIIK_01645at 371.797 kb on - strand, within OKGIIK_01645at 371.797 kb on - strand, within OKGIIK_01645at 372.013 kb on - strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.081 kb on + strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.082 kb on - strand, within OKGIIK_01645at 372.328 kb on + strandat 372.328 kb on + strandat 372.328 kb on + strandat 372.328 kb on + strandat 372.329 kb on - strandat 372.329 kb on - strandat 372.561 kb on + strand, within OKGIIK_01650at 372.561 kb on + strand, within OKGIIK_01650at 372.561 kb on + strand, within OKGIIK_01650at 372.562 kb on - strand, within OKGIIK_01650at 372.562 kb on - strand, within OKGIIK_01650at 372.562 kb on - strand, within OKGIIK_01650at 372.562 kb on - strand, within OKGIIK_01650at 372.562 kb on - strand, within OKGIIK_01650at 372.981 kb on + strand, within OKGIIK_01650at 372.981 kb on + strand, within OKGIIK_01650at 372.982 kb on - strand, within OKGIIK_01650at 372.982 kb on - strand, within OKGIIK_01650at 372.982 kb on - strand, within OKGIIK_01650at 372.982 kb on - strand, within OKGIIK_01650at 372.982 kb on - strand, within OKGIIK_01650at 373.110 kb on + strand, within OKGIIK_01650at 373.110 kb on + strand, within OKGIIK_01650at 373.110 kb on + strand, within OKGIIK_01650at 373.110 kb on + strand, within OKGIIK_01650at 373.110 kb on + strand, within OKGIIK_01650at 373.110 kb on + strand, within OKGIIK_01650at 373.110 kb on + strand, within OKGIIK_01650at 373.111 kb on - strand, within OKGIIK_01650at 373.111 kb on - strand, within OKGIIK_01650at 373.602 kb on + strand, within OKGIIK_01650at 373.602 kb on + strand, within OKGIIK_01650at 373.602 kb on + strand, within OKGIIK_01650at 373.603 kb on - strand, within OKGIIK_01650at 373.603 kb on - strand, within OKGIIK_01650at 373.818 kb on + strandat 373.818 kb on + strandat 373.818 kb on + strandat 373.818 kb on + strandat 373.818 kb on + strandat 373.818 kb on + strandat 373.818 kb on + strandat 373.818 kb on + strandat 373.818 kb on + strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 373.819 kb on - strandat 374.024 kb on + strandat 374.024 kb on + strandat 374.024 kb on + strandat 374.025 kb on - strandat 374.025 kb on - strandat 374.025 kb on - strandat 374.025 kb on - strandat 374.025 kb on - strandat 374.025 kb on - strandat 374.099 kb on - strand, within OKGIIK_01655at 374.099 kb on - strand, within OKGIIK_01655at 374.099 kb on - strand, within OKGIIK_01655at 374.099 kb on - strand, within OKGIIK_01655at 374.111 kb on + strand, within OKGIIK_01655at 374.111 kb on + strand, within OKGIIK_01655at 374.111 kb on + strand, within OKGIIK_01655at 374.112 kb on - strand, within OKGIIK_01655at 374.112 kb on - strand, within OKGIIK_01655at 374.112 kb on - strand, within OKGIIK_01655at 374.276 kb on + strand, within OKGIIK_01655at 374.277 kb on - strand, within OKGIIK_01655at 374.277 kb on - strand, within OKGIIK_01655at 374.277 kb on - strand, within OKGIIK_01655at 374.356 kb on + strand, within OKGIIK_01655at 374.357 kb on - strand, within OKGIIK_01655at 374.609 kb on + strand, within OKGIIK_01655at 374.609 kb on + strand, within OKGIIK_01655at 374.609 kb on + strand, within OKGIIK_01655at 374.610 kb on - strand, within OKGIIK_01655at 374.610 kb on - strand, within OKGIIK_01655at 374.610 kb on - strand, within OKGIIK_01655at 374.610 kb on - strand, within OKGIIK_01655at 374.610 kb on - strand, within OKGIIK_01655at 374.708 kb on + strand, within OKGIIK_01655at 374.709 kb on - strand, within OKGIIK_01655at 374.709 kb on - strand, within OKGIIK_01655at 374.709 kb on - strand, within OKGIIK_01655at 374.722 kb on + strand, within OKGIIK_01655at 374.891 kb on + strand, within OKGIIK_01655at 374.892 kb on - strand, within OKGIIK_01655at 374.892 kb on - strand, within OKGIIK_01655at 374.892 kb on - strand, within OKGIIK_01655

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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371,697 + OKGIIK_01645 0.36 -0.8
371,697 + OKGIIK_01645 0.36 -2.0
371,697 + OKGIIK_01645 0.36 -0.0
371,697 + OKGIIK_01645 0.36 +0.2
371,697 + OKGIIK_01645 0.36 -0.5
371,697 + OKGIIK_01645 0.36 +0.4
371,697 + OKGIIK_01645 0.36 -0.7
371,697 + OKGIIK_01645 0.36 +1.2
371,697 + OKGIIK_01645 0.36 -0.8
371,697 + OKGIIK_01645 0.36 -1.4
371,697 + OKGIIK_01645 0.36 -0.2
371,697 + OKGIIK_01645 0.36 -0.2
371,698 - OKGIIK_01645 0.37 +0.0
371,698 - OKGIIK_01645 0.37 +0.7
371,698 - OKGIIK_01645 0.37 +0.7
371,698 - OKGIIK_01645 0.37 -0.5
371,698 - OKGIIK_01645 0.37 -1.1
371,698 - OKGIIK_01645 0.37 -0.6
371,698 - OKGIIK_01645 0.37 -0.7
371,698 - OKGIIK_01645 0.37 -0.8
371,698 - OKGIIK_01645 0.37 +0.5
371,698 - OKGIIK_01645 0.37 +1.2
371,698 - OKGIIK_01645 0.37 -0.0
371,698 - OKGIIK_01645 0.37 +0.8
371,698 - OKGIIK_01645 0.37 -1.1
371,703 + OKGIIK_01645 0.37 -1.8
371,703 + OKGIIK_01645 0.37 -1.1
371,703 + OKGIIK_01645 0.37 -0.7
371,703 + OKGIIK_01645 0.37 -1.8
371,703 + OKGIIK_01645 0.37 -3.0
371,703 + OKGIIK_01645 0.37 -1.6
371,703 + OKGIIK_01645 0.37 -0.0
371,704 - OKGIIK_01645 0.37 +1.4
371,704 - OKGIIK_01645 0.37 -3.5
371,704 - OKGIIK_01645 0.37 +1.2
371,777 + OKGIIK_01645 0.45 -0.8
371,778 + OKGIIK_01645 0.45 -1.5
371,778 + OKGIIK_01645 0.45 -2.0
371,778 + OKGIIK_01645 0.45 +1.0
371,778 + OKGIIK_01645 0.45 +0.9
371,778 + OKGIIK_01645 0.45 +0.0
371,778 + OKGIIK_01645 0.45 +0.2
371,778 + OKGIIK_01645 0.45 -1.1
371,778 + OKGIIK_01645 0.45 -1.6
371,778 + OKGIIK_01645 0.45 +0.2
371,778 + OKGIIK_01645 0.45 +0.6
371,778 + OKGIIK_01645 0.45 -1.4
371,778 + OKGIIK_01645 0.45 -1.9
371,778 + OKGIIK_01645 0.45 -1.1
371,778 + OKGIIK_01645 0.45 -0.1
371,778 + OKGIIK_01645 0.45 -0.4
371,778 + OKGIIK_01645 0.45 -1.2
371,779 - OKGIIK_01645 0.45 -2.6
371,779 - OKGIIK_01645 0.45 -0.6
371,779 - OKGIIK_01645 0.45 -1.4
371,779 - OKGIIK_01645 0.45 +0.2
371,779 - OKGIIK_01645 0.45 -2.0
371,779 - OKGIIK_01645 0.45 -1.5
371,779 - OKGIIK_01645 0.45 -1.0
371,779 - OKGIIK_01645 0.45 -0.8
371,779 - OKGIIK_01645 0.45 +0.5
371,779 - OKGIIK_01645 0.45 -2.0
371,779 - OKGIIK_01645 0.45 +0.6
371,779 - OKGIIK_01645 0.45 -0.8
371,779 - OKGIIK_01645 0.45 -0.6
371,779 - OKGIIK_01645 0.45 -0.0
371,779 - OKGIIK_01645 0.45 -0.8
371,797 - OKGIIK_01645 0.47 -1.3
371,797 - OKGIIK_01645 0.47 -1.1
371,797 - OKGIIK_01645 0.47 +0.3
372,013 - OKGIIK_01645 0.71 -0.3
372,081 + OKGIIK_01645 0.79 +0.2
372,081 + OKGIIK_01645 0.79 -0.5
372,081 + OKGIIK_01645 0.79 -1.1
372,081 + OKGIIK_01645 0.79 -0.4
372,081 + OKGIIK_01645 0.79 -0.3
372,081 + OKGIIK_01645 0.79 -1.4
372,081 + OKGIIK_01645 0.79 -0.0
372,081 + OKGIIK_01645 0.79 -2.5
372,081 + OKGIIK_01645 0.79 -2.1
372,081 + OKGIIK_01645 0.79 -0.8
372,082 - OKGIIK_01645 0.79 +1.5
372,082 - OKGIIK_01645 0.79 -0.1
372,082 - OKGIIK_01645 0.79 +0.7
372,082 - OKGIIK_01645 0.79 -1.1
372,082 - OKGIIK_01645 0.79 -1.5
372,082 - OKGIIK_01645 0.79 +0.9
372,082 - OKGIIK_01645 0.79 -0.1
372,082 - OKGIIK_01645 0.79 +0.5
372,082 - OKGIIK_01645 0.79 +0.4
372,082 - OKGIIK_01645 0.79 -0.4
372,082 - OKGIIK_01645 0.79 -0.4
372,082 - OKGIIK_01645 0.79 -0.8
372,328 + -1.6
372,328 + +0.2
372,328 + -0.5
372,328 + -1.4
372,329 - -0.1
372,329 - +0.6
372,561 + OKGIIK_01650 0.14 -1.4
372,561 + OKGIIK_01650 0.14 +0.4
372,561 + OKGIIK_01650 0.14 -2.1
372,562 - OKGIIK_01650 0.14 +0.5
372,562 - OKGIIK_01650 0.14 -0.3
372,562 - OKGIIK_01650 0.14 +0.2
372,562 - OKGIIK_01650 0.14 +1.8
372,562 - OKGIIK_01650 0.14 -0.1
372,981 + OKGIIK_01650 0.40 -1.4
372,981 + OKGIIK_01650 0.40 -0.6
372,982 - OKGIIK_01650 0.40 -0.4
372,982 - OKGIIK_01650 0.40 -1.1
372,982 - OKGIIK_01650 0.40 -0.8
372,982 - OKGIIK_01650 0.40 -1.1
372,982 - OKGIIK_01650 0.40 +0.3
373,110 + OKGIIK_01650 0.48 -0.4
373,110 + OKGIIK_01650 0.48 -2.7
373,110 + OKGIIK_01650 0.48 -0.7
373,110 + OKGIIK_01650 0.48 -1.8
373,110 + OKGIIK_01650 0.48 +0.0
373,110 + OKGIIK_01650 0.48 -0.4
373,110 + OKGIIK_01650 0.48 +1.2
373,111 - OKGIIK_01650 0.48 -1.4
373,111 - OKGIIK_01650 0.48 +2.3
373,602 + OKGIIK_01650 0.79 -0.4
373,602 + OKGIIK_01650 0.79 -1.9
373,602 + OKGIIK_01650 0.79 +1.2
373,603 - OKGIIK_01650 0.79 -1.1
373,603 - OKGIIK_01650 0.79 +0.4
373,818 + -1.1
373,818 + +1.5
373,818 + -0.4
373,818 + -0.4
373,818 + -1.4
373,818 + +0.5
373,818 + -0.2
373,818 + +0.2
373,818 + -1.3
373,819 - -0.1
373,819 - -2.0
373,819 - -1.0
373,819 - +1.0
373,819 - -2.0
373,819 - -0.4
373,819 - -0.7
373,819 - +0.2
373,819 - +0.2
373,819 - +0.2
373,819 - +0.3
373,819 - +0.7
374,024 + -0.5
374,024 + -0.1
374,024 + -1.4
374,025 - -0.5
374,025 - -0.7
374,025 - -1.1
374,025 - -1.4
374,025 - -1.1
374,025 - -0.4
374,099 - OKGIIK_01655 0.14 +1.8
374,099 - OKGIIK_01655 0.14 +0.5
374,099 - OKGIIK_01655 0.14 -1.1
374,099 - OKGIIK_01655 0.14 -0.1
374,111 + OKGIIK_01655 0.15 +0.1
374,111 + OKGIIK_01655 0.15 -0.8
374,111 + OKGIIK_01655 0.15 -0.1
374,112 - OKGIIK_01655 0.15 -1.5
374,112 - OKGIIK_01655 0.15 -0.4
374,112 - OKGIIK_01655 0.15 +1.2
374,276 + OKGIIK_01655 0.29 -0.1
374,277 - OKGIIK_01655 0.29 +0.2
374,277 - OKGIIK_01655 0.29 -0.1
374,277 - OKGIIK_01655 0.29 +0.2
374,356 + OKGIIK_01655 0.35 -0.6
374,357 - OKGIIK_01655 0.35 -1.4
374,609 + OKGIIK_01655 0.56 -1.0
374,609 + OKGIIK_01655 0.56 -0.8
374,609 + OKGIIK_01655 0.56 +0.2
374,610 - OKGIIK_01655 0.56 -0.8
374,610 - OKGIIK_01655 0.56 +0.5
374,610 - OKGIIK_01655 0.56 -1.4
374,610 - OKGIIK_01655 0.56 -1.1
374,610 - OKGIIK_01655 0.56 -0.5
374,708 + OKGIIK_01655 0.65 -0.7
374,709 - OKGIIK_01655 0.65 -0.8
374,709 - OKGIIK_01655 0.65 -1.4
374,709 - OKGIIK_01655 0.65 +1.2
374,722 + OKGIIK_01655 0.66 -0.8
374,891 + OKGIIK_01655 0.80 -2.7
374,892 - OKGIIK_01655 0.80 -0.6
374,892 - OKGIIK_01655 0.80 -2.5
374,892 - OKGIIK_01655 0.80 -1.1

Or see this region's nucleotide sequence