Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_00525

Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_00515 and OKGIIK_00520 are separated by 10 nucleotidesOKGIIK_00520 and OKGIIK_00525 are separated by 5 nucleotidesOKGIIK_00525 and OKGIIK_00530 overlap by 4 nucleotidesOKGIIK_00530 and OKGIIK_00535 overlap by 4 nucleotides OKGIIK_00515: OKGIIK_00515 - Phage tail protein, at 116,716 to 118,326 _00515 OKGIIK_00520: OKGIIK_00520 - phage tail protein, at 118,337 to 118,864 _00520 OKGIIK_00525: OKGIIK_00525 - PEROXIDASE-4 domain-containing protein, at 118,870 to 119,607 _00525 OKGIIK_00530: OKGIIK_00530 - hypothetical protein, at 119,604 to 120,368 _00530 OKGIIK_00535: OKGIIK_00535 - Pvc16-N domain-containing protein, at 120,365 to 121,606 _00535 Position (kb) 118 119 120Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.994 kb on + strand, within OKGIIK_00515at 117.994 kb on + strand, within OKGIIK_00515at 117.994 kb on + strand, within OKGIIK_00515at 117.994 kb on + strand, within OKGIIK_00515at 117.994 kb on + strand, within OKGIIK_00515at 117.994 kb on + strand, within OKGIIK_00515at 117.994 kb on + strand, within OKGIIK_00515at 117.995 kb on - strand, within OKGIIK_00515at 117.995 kb on - strand, within OKGIIK_00515at 117.995 kb on - strand, within OKGIIK_00515at 117.995 kb on - strand, within OKGIIK_00515at 117.995 kb on - strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.000 kb on + strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.001 kb on - strand, within OKGIIK_00515at 118.027 kb on + strand, within OKGIIK_00515at 118.027 kb on + strand, within OKGIIK_00515at 118.027 kb on + strand, within OKGIIK_00515at 118.027 kb on + strand, within OKGIIK_00515at 118.027 kb on + strand, within OKGIIK_00515at 118.027 kb on + strand, within OKGIIK_00515at 118.027 kb on + strand, within OKGIIK_00515at 118.028 kb on - strand, within OKGIIK_00515at 118.028 kb on - strand, within OKGIIK_00515at 118.028 kb on - strand, within OKGIIK_00515at 118.028 kb on - strand, within OKGIIK_00515at 118.028 kb on - strand, within OKGIIK_00515at 118.028 kb on - strand, within OKGIIK_00515at 118.028 kb on - strand, within OKGIIK_00515at 118.180 kb on + strandat 118.180 kb on + strandat 118.180 kb on + strandat 118.180 kb on + strandat 118.180 kb on + strandat 118.180 kb on + strandat 118.180 kb on + strandat 118.181 kb on - strandat 118.181 kb on - strandat 118.181 kb on - strandat 118.376 kb on + strandat 118.376 kb on + strandat 118.377 kb on - strandat 118.377 kb on - strandat 118.377 kb on - strandat 118.377 kb on - strandat 118.416 kb on - strand, within OKGIIK_00520at 118.526 kb on + strand, within OKGIIK_00520at 118.527 kb on - strand, within OKGIIK_00520at 118.527 kb on - strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.667 kb on + strand, within OKGIIK_00520at 118.668 kb on - strand, within OKGIIK_00520at 118.697 kb on + strand, within OKGIIK_00520at 118.697 kb on + strand, within OKGIIK_00520at 118.707 kb on - strand, within OKGIIK_00520at 118.727 kb on + strand, within OKGIIK_00520at 118.727 kb on + strand, within OKGIIK_00520at 118.728 kb on - strand, within OKGIIK_00520at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.975 kb on + strand, within OKGIIK_00525at 118.976 kb on - strand, within OKGIIK_00525at 118.976 kb on - strand, within OKGIIK_00525at 118.976 kb on - strand, within OKGIIK_00525at 119.333 kb on + strand, within OKGIIK_00525at 119.333 kb on + strand, within OKGIIK_00525at 119.334 kb on - strand, within OKGIIK_00525at 119.335 kb on - strand, within OKGIIK_00525at 119.338 kb on + strand, within OKGIIK_00525at 119.338 kb on + strand, within OKGIIK_00525at 119.338 kb on + strand, within OKGIIK_00525at 119.338 kb on + strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.339 kb on - strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.524 kb on + strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.525 kb on - strand, within OKGIIK_00525at 119.531 kb on - strand, within OKGIIK_00525at 119.531 kb on - strand, within OKGIIK_00525at 119.584 kb on + strandat 119.584 kb on + strandat 119.584 kb on + strandat 119.585 kb on - strandat 119.585 kb on - strandat 119.904 kb on - strand, within OKGIIK_00530at 119.911 kb on + strand, within OKGIIK_00530at 119.912 kb on - strand, within OKGIIK_00530at 119.912 kb on - strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.262 kb on + strand, within OKGIIK_00530at 120.263 kb on - strand, within OKGIIK_00530at 120.263 kb on - strand, within OKGIIK_00530at 120.333 kb on + strandat 120.333 kb on + strandat 120.334 kb on - strandat 120.334 kb on - strandat 120.530 kb on + strand, within OKGIIK_00535at 120.531 kb on - strand, within OKGIIK_00535at 120.531 kb on - strand, within OKGIIK_00535

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
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117,994 + OKGIIK_00515 0.79 -1.8
117,994 + OKGIIK_00515 0.79 -0.9
117,994 + OKGIIK_00515 0.79 +0.1
117,994 + OKGIIK_00515 0.79 -0.8
117,994 + OKGIIK_00515 0.79 -0.9
117,994 + OKGIIK_00515 0.79 +0.1
117,994 + OKGIIK_00515 0.79 +0.5
117,995 - OKGIIK_00515 0.79 -0.9
117,995 - OKGIIK_00515 0.79 -0.9
117,995 - OKGIIK_00515 0.79 -0.7
117,995 - OKGIIK_00515 0.79 +0.3
117,995 - OKGIIK_00515 0.79 -0.9
118,000 + OKGIIK_00515 0.80 +0.9
118,000 + OKGIIK_00515 0.80 +1.1
118,000 + OKGIIK_00515 0.80 +0.4
118,000 + OKGIIK_00515 0.80 -0.1
118,000 + OKGIIK_00515 0.80 +0.5
118,000 + OKGIIK_00515 0.80 +1.1
118,000 + OKGIIK_00515 0.80 -0.9
118,000 + OKGIIK_00515 0.80 -0.7
118,000 + OKGIIK_00515 0.80 -1.3
118,000 + OKGIIK_00515 0.80 +0.1
118,000 + OKGIIK_00515 0.80 -0.7
118,000 + OKGIIK_00515 0.80 +0.5
118,000 + OKGIIK_00515 0.80 +0.8
118,000 + OKGIIK_00515 0.80 -1.7
118,000 + OKGIIK_00515 0.80 +0.9
118,001 - OKGIIK_00515 0.80 +0.7
118,001 - OKGIIK_00515 0.80 +1.8
118,001 - OKGIIK_00515 0.80 +0.4
118,001 - OKGIIK_00515 0.80 -1.9
118,001 - OKGIIK_00515 0.80 +0.4
118,001 - OKGIIK_00515 0.80 -1.2
118,001 - OKGIIK_00515 0.80 -1.5
118,001 - OKGIIK_00515 0.80 -1.2
118,001 - OKGIIK_00515 0.80 -0.9
118,001 - OKGIIK_00515 0.80 -0.2
118,001 - OKGIIK_00515 0.80 -2.6
118,001 - OKGIIK_00515 0.80 -0.1
118,001 - OKGIIK_00515 0.80 +0.6
118,001 - OKGIIK_00515 0.80 -0.3
118,001 - OKGIIK_00515 0.80 +0.5
118,001 - OKGIIK_00515 0.80 -0.3
118,027 + OKGIIK_00515 0.81 -0.1
118,027 + OKGIIK_00515 0.81 -0.9
118,027 + OKGIIK_00515 0.81 -0.5
118,027 + OKGIIK_00515 0.81 -1.5
118,027 + OKGIIK_00515 0.81 -1.7
118,027 + OKGIIK_00515 0.81 -2.2
118,027 + OKGIIK_00515 0.81 -0.1
118,028 - OKGIIK_00515 0.81 +0.5
118,028 - OKGIIK_00515 0.81 -1.0
118,028 - OKGIIK_00515 0.81 +0.3
118,028 - OKGIIK_00515 0.81 +0.1
118,028 - OKGIIK_00515 0.81 -0.0
118,028 - OKGIIK_00515 0.81 -0.7
118,028 - OKGIIK_00515 0.81 -1.7
118,180 + -1.5
118,180 + -0.9
118,180 + -1.2
118,180 + +0.1
118,180 + +0.7
118,180 + +0.1
118,180 + -1.5
118,181 - -2.0
118,181 - -0.9
118,181 - -0.5
118,376 + -0.9
118,376 + +0.5
118,377 - +0.6
118,377 - +0.7
118,377 - +0.4
118,377 - -0.9
118,416 - OKGIIK_00520 0.15 -0.5
118,526 + OKGIIK_00520 0.36 -0.5
118,527 - OKGIIK_00520 0.36 -0.9
118,527 - OKGIIK_00520 0.36 -0.5
118,667 + OKGIIK_00520 0.62 +0.3
118,667 + OKGIIK_00520 0.62 -0.9
118,667 + OKGIIK_00520 0.62 +0.1
118,667 + OKGIIK_00520 0.62 -0.5
118,667 + OKGIIK_00520 0.62 -1.5
118,667 + OKGIIK_00520 0.62 +0.6
118,667 + OKGIIK_00520 0.62 +1.0
118,667 + OKGIIK_00520 0.62 -1.7
118,667 + OKGIIK_00520 0.62 -1.7
118,667 + OKGIIK_00520 0.62 -0.9
118,667 + OKGIIK_00520 0.62 -0.2
118,668 - OKGIIK_00520 0.63 +0.8
118,697 + OKGIIK_00520 0.68 -1.7
118,697 + OKGIIK_00520 0.68 -1.7
118,707 - OKGIIK_00520 0.70 -0.2
118,727 + OKGIIK_00520 0.74 -0.8
118,727 + OKGIIK_00520 0.74 -0.0
118,728 - OKGIIK_00520 0.74 +0.6
118,975 + OKGIIK_00525 0.14 -0.2
118,975 + OKGIIK_00525 0.14 -2.8
118,975 + OKGIIK_00525 0.14 -1.3
118,975 + OKGIIK_00525 0.14 -1.5
118,975 + OKGIIK_00525 0.14 +0.8
118,976 - OKGIIK_00525 0.14 -1.0
118,976 - OKGIIK_00525 0.14 +0.1
118,976 - OKGIIK_00525 0.14 -0.0
119,333 + OKGIIK_00525 0.63 -0.3
119,333 + OKGIIK_00525 0.63 +0.8
119,334 - OKGIIK_00525 0.63 +0.1
119,335 - OKGIIK_00525 0.63 +1.1
119,338 + OKGIIK_00525 0.63 +0.3
119,338 + OKGIIK_00525 0.63 -1.9
119,338 + OKGIIK_00525 0.63 -0.9
119,338 + OKGIIK_00525 0.63 +0.2
119,339 - OKGIIK_00525 0.64 -0.8
119,339 - OKGIIK_00525 0.64 -1.0
119,339 - OKGIIK_00525 0.64 -3.3
119,339 - OKGIIK_00525 0.64 -0.5
119,339 - OKGIIK_00525 0.64 -1.5
119,524 + OKGIIK_00525 0.89 -0.9
119,524 + OKGIIK_00525 0.89 +1.5
119,524 + OKGIIK_00525 0.89 -1.7
119,524 + OKGIIK_00525 0.89 +0.8
119,524 + OKGIIK_00525 0.89 -0.9
119,524 + OKGIIK_00525 0.89 +1.1
119,524 + OKGIIK_00525 0.89 -1.5
119,524 + OKGIIK_00525 0.89 -0.5
119,524 + OKGIIK_00525 0.89 -1.6
119,525 - OKGIIK_00525 0.89 -2.6
119,525 - OKGIIK_00525 0.89 +0.4
119,525 - OKGIIK_00525 0.89 +0.3
119,525 - OKGIIK_00525 0.89 -1.7
119,525 - OKGIIK_00525 0.89 +0.1
119,525 - OKGIIK_00525 0.89 -1.0
119,525 - OKGIIK_00525 0.89 -0.5
119,531 - OKGIIK_00525 0.90 -0.9
119,531 - OKGIIK_00525 0.90 -2.0
119,584 + -1.0
119,584 + +0.1
119,584 + -0.2
119,585 - +1.1
119,585 - -1.0
119,904 - OKGIIK_00530 0.39 +2.1
119,911 + OKGIIK_00530 0.40 -0.3
119,912 - OKGIIK_00530 0.40 -2.3
119,912 - OKGIIK_00530 0.40 -1.0
120,262 + OKGIIK_00530 0.86 -0.1
120,262 + OKGIIK_00530 0.86 +0.1
120,262 + OKGIIK_00530 0.86 -2.0
120,262 + OKGIIK_00530 0.86 -0.5
120,262 + OKGIIK_00530 0.86 +0.6
120,262 + OKGIIK_00530 0.86 -0.9
120,263 - OKGIIK_00530 0.86 +0.1
120,263 - OKGIIK_00530 0.86 -0.7
120,333 + -1.2
120,333 + -0.1
120,334 - +0.3
120,334 - -0.0
120,530 + OKGIIK_00535 0.13 +0.1
120,531 - OKGIIK_00535 0.13 +0.3
120,531 - OKGIIK_00535 0.13 -0.0

Or see this region's nucleotide sequence