Experiment: R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hop and OKGIIK_00160 are separated by 58 nucleotides OKGIIK_00160 and OKGIIK_00165 are separated by 95 nucleotides
OKGIIK_00155: hop - ribonucleoside-diphosphate reductase, at 38,592 to 41,864
hop
OKGIIK_00160: OKGIIK_00160 - hypothetical protein, at 41,923 to 42,576
_00160
OKGIIK_00165: OKGIIK_00165 - NrdJb, at 42,672 to 43,424
_00165
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.954 kb on - strand, within hop at 41.076 kb on + strand, within hop at 41.076 kb on + strand, within hop at 41.076 kb on + strand, within hop at 41.076 kb on + strand, within hop at 41.130 kb on + strand, within hop at 41.130 kb on + strand, within hop at 41.130 kb on + strand, within hop at 41.130 kb on + strand, within hop at 41.131 kb on - strand, within hop at 41.131 kb on - strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.175 kb on + strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.176 kb on - strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.184 kb on + strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.185 kb on - strand, within hop at 41.277 kb on - strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.346 kb on + strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.347 kb on - strand, within hop at 41.487 kb on + strand, within hop at 41.488 kb on - strand, within hop at 41.488 kb on - strand, within hop at 41.488 kb on - strand, within hop at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.625 kb on + strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.626 kb on - strand at 41.631 kb on + strand at 41.631 kb on + strand at 41.631 kb on + strand at 41.631 kb on + strand at 41.631 kb on + strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.632 kb on - strand at 41.637 kb on + strand at 41.637 kb on + strand at 41.637 kb on + strand at 41.637 kb on + strand at 41.637 kb on + strand at 41.638 kb on - strand at 41.638 kb on - strand at 41.638 kb on - strand at 41.638 kb on - strand at 41.733 kb on + strand at 41.733 kb on + strand at 41.757 kb on - strand at 41.757 kb on - strand at 41.794 kb on - strand at 41.794 kb on - strand at 41.794 kb on - strand at 41.794 kb on - strand at 41.847 kb on + strand at 41.848 kb on - strand at 41.848 kb on - strand at 41.848 kb on - strand at 41.848 kb on - strand at 41.848 kb on - strand at 41.850 kb on + strand at 41.850 kb on + strand at 41.850 kb on + strand at 41.850 kb on + strand at 41.851 kb on - strand at 41.851 kb on - strand at 41.851 kb on - strand at 41.851 kb on - strand at 42.112 kb on - strand, within OKGIIK_00160 at 42.575 kb on - strand at 42.575 kb on - strand at 42.575 kb on - strand at 42.575 kb on - strand at 42.575 kb on - strand at 42.575 kb on - strand at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.876 kb on + strand, within OKGIIK_00165 at 42.877 kb on - strand, within OKGIIK_00165 at 42.877 kb on - strand, within OKGIIK_00165 at 43.083 kb on + strand, within OKGIIK_00165 at 43.083 kb on + strand, within OKGIIK_00165 at 43.084 kb on - strand, within OKGIIK_00165 at 43.084 kb on - strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.104 kb on + strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.105 kb on - strand, within OKGIIK_00165 at 43.230 kb on + strand, within OKGIIK_00165 at 43.230 kb on + strand, within OKGIIK_00165 at 43.231 kb on - strand, within OKGIIK_00165 at 43.431 kb on + strand at 43.431 kb on + strand at 43.431 kb on + strand at 43.431 kb on + strand at 43.448 kb on + strand at 43.448 kb on + strand at 43.448 kb on + strand at 43.449 kb on - strand at 43.449 kb on - strand at 43.489 kb on + strand at 43.490 kb on - strand at 43.537 kb on + strand at 43.538 kb on - strand at 43.538 kb on - strand at 43.562 kb on + strand at 43.562 kb on + strand at 43.562 kb on + strand at 43.562 kb on + strand at 43.562 kb on + strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.563 kb on - strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.565 kb on + strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand at 43.566 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Metal_ion_mix_sitestressplate 0.5 x remove 40,954 - hop OKGIIK_00155 0.72 -0.5 41,076 + hop OKGIIK_00155 0.76 -0.8 41,076 + hop OKGIIK_00155 0.76 +0.1 41,076 + hop OKGIIK_00155 0.76 -1.1 41,076 + hop OKGIIK_00155 0.76 -0.8 41,130 + hop OKGIIK_00155 0.78 -0.5 41,130 + hop OKGIIK_00155 0.78 -0.5 41,130 + hop OKGIIK_00155 0.78 +1.1 41,130 + hop OKGIIK_00155 0.78 -0.9 41,131 - hop OKGIIK_00155 0.78 +0.3 41,131 - hop OKGIIK_00155 0.78 +0.4 41,175 + hop OKGIIK_00155 0.79 -0.4 41,175 + hop OKGIIK_00155 0.79 -0.5 41,175 + hop OKGIIK_00155 0.79 -1.4 41,175 + hop OKGIIK_00155 0.79 +0.0 41,175 + hop OKGIIK_00155 0.79 +0.8 41,175 + hop OKGIIK_00155 0.79 +0.0 41,176 - hop OKGIIK_00155 0.79 +0.3 41,176 - hop OKGIIK_00155 0.79 +0.7 41,176 - hop OKGIIK_00155 0.79 -0.5 41,176 - hop OKGIIK_00155 0.79 +0.6 41,176 - hop OKGIIK_00155 0.79 +0.9 41,176 - hop OKGIIK_00155 0.79 -0.5 41,176 - hop OKGIIK_00155 0.79 -2.9 41,176 - hop OKGIIK_00155 0.79 -1.3 41,176 - hop OKGIIK_00155 0.79 -0.4 41,184 + hop OKGIIK_00155 0.79 +0.5 41,184 + hop OKGIIK_00155 0.79 -0.5 41,184 + hop OKGIIK_00155 0.79 +0.5 41,184 + hop OKGIIK_00155 0.79 +0.5 41,184 + hop OKGIIK_00155 0.79 +0.6 41,184 + hop OKGIIK_00155 0.79 +0.5 41,184 + hop OKGIIK_00155 0.79 -1.3 41,184 + hop OKGIIK_00155 0.79 -0.1 41,185 - hop OKGIIK_00155 0.79 +1.0 41,185 - hop OKGIIK_00155 0.79 +0.5 41,185 - hop OKGIIK_00155 0.79 -0.9 41,185 - hop OKGIIK_00155 0.79 -1.3 41,185 - hop OKGIIK_00155 0.79 -0.2 41,185 - hop OKGIIK_00155 0.79 -1.3 41,185 - hop OKGIIK_00155 0.79 +0.3 41,277 - hop OKGIIK_00155 0.82 -2.0 41,346 + hop OKGIIK_00155 0.84 -0.5 41,346 + hop OKGIIK_00155 0.84 +0.5 41,346 + hop OKGIIK_00155 0.84 -1.0 41,346 + hop OKGIIK_00155 0.84 -2.1 41,346 + hop OKGIIK_00155 0.84 -2.3 41,346 + hop OKGIIK_00155 0.84 +1.0 41,346 + hop OKGIIK_00155 0.84 +0.3 41,346 + hop OKGIIK_00155 0.84 -0.4 41,346 + hop OKGIIK_00155 0.84 +0.1 41,347 - hop OKGIIK_00155 0.84 +0.5 41,347 - hop OKGIIK_00155 0.84 +0.6 41,347 - hop OKGIIK_00155 0.84 +1.0 41,347 - hop OKGIIK_00155 0.84 -0.1 41,347 - hop OKGIIK_00155 0.84 +1.1 41,347 - hop OKGIIK_00155 0.84 -1.7 41,347 - hop OKGIIK_00155 0.84 -1.1 41,347 - hop OKGIIK_00155 0.84 -0.8 41,347 - hop OKGIIK_00155 0.84 +0.5 41,347 - hop OKGIIK_00155 0.84 +1.2 41,347 - hop OKGIIK_00155 0.84 +0.7 41,347 - hop OKGIIK_00155 0.84 -0.1 41,347 - hop OKGIIK_00155 0.84 -0.2 41,347 - hop OKGIIK_00155 0.84 +0.4 41,487 + hop OKGIIK_00155 0.88 -1.6 41,488 - hop OKGIIK_00155 0.88 +0.0 41,488 - hop OKGIIK_00155 0.88 +0.0 41,488 - hop OKGIIK_00155 0.88 +0.0 41,625 + +0.7 41,625 + -0.6 41,625 + -0.5 41,625 + +1.1 41,625 + -1.0 41,625 + +0.1 41,625 + -0.9 41,625 + +0.3 41,625 + +0.1 41,625 + -0.9 41,625 + +0.5 41,625 + -0.5 41,625 + -2.0 41,625 + +0.6 41,625 + -1.3 41,625 + -0.5 41,625 + +0.4 41,625 + +0.5 41,625 + -0.2 41,625 + -1.0 41,625 + +0.8 41,625 + +0.1 41,625 + -1.3 41,625 + +0.7 41,625 + +0.3 41,625 + -1.9 41,625 + +0.5 41,625 + -0.7 41,625 + -0.1 41,626 - +2.1 41,626 - +0.6 41,626 - -0.0 41,626 - -1.1 41,626 - +1.5 41,626 - -0.6 41,626 - -0.5 41,626 - +0.0 41,626 - -2.0 41,626 - -0.2 41,626 - -1.1 41,626 - +0.0 41,626 - +1.0 41,626 - +0.6 41,626 - -0.8 41,626 - -1.3 41,626 - +0.5 41,626 - -0.1 41,631 + +1.9 41,631 + -0.6 41,631 + +0.5 41,631 + -0.1 41,631 + -2.0 41,632 - +0.8 41,632 - -0.1 41,632 - +0.7 41,632 - -0.2 41,632 - -0.9 41,632 - -1.7 41,632 - -0.3 41,632 - -0.0 41,632 - -0.1 41,637 + +1.0 41,637 + -1.1 41,637 + -0.5 41,637 + -0.5 41,637 + +1.0 41,638 - -2.0 41,638 - +2.0 41,638 - -2.0 41,638 - -1.1 41,733 + +0.1 41,733 + +0.9 41,757 - -0.9 41,757 - -0.5 41,794 - -0.9 41,794 - -0.7 41,794 - +2.1 41,794 - -0.2 41,847 + -1.5 41,848 - +1.0 41,848 - +0.6 41,848 - +1.0 41,848 - +0.1 41,848 - -1.3 41,850 + -0.3 41,850 + -0.2 41,850 + -0.3 41,850 + -0.6 41,851 - +0.2 41,851 - +1.3 41,851 - +0.7 41,851 - -1.1 42,112 - OKGIIK_00160 0.29 +0.7 42,575 - -1.5 42,575 - -0.2 42,575 - +0.8 42,575 - +0.5 42,575 - -0.3 42,575 - +0.7 42,876 + OKGIIK_00165 0.27 -0.3 42,876 + OKGIIK_00165 0.27 -0.9 42,876 + OKGIIK_00165 0.27 -0.6 42,876 + OKGIIK_00165 0.27 -0.3 42,876 + OKGIIK_00165 0.27 +0.6 42,876 + OKGIIK_00165 0.27 -1.0 42,876 + OKGIIK_00165 0.27 -1.5 42,877 - OKGIIK_00165 0.27 +0.2 42,877 - OKGIIK_00165 0.27 +0.1 43,083 + OKGIIK_00165 0.55 -0.1 43,083 + OKGIIK_00165 0.55 +2.0 43,084 - OKGIIK_00165 0.55 +1.2 43,084 - OKGIIK_00165 0.55 +0.4 43,104 + OKGIIK_00165 0.57 -0.1 43,104 + OKGIIK_00165 0.57 -2.8 43,104 + OKGIIK_00165 0.57 +0.7 43,104 + OKGIIK_00165 0.57 -1.0 43,104 + OKGIIK_00165 0.57 +0.5 43,104 + OKGIIK_00165 0.57 -0.4 43,104 + OKGIIK_00165 0.57 +1.5 43,104 + OKGIIK_00165 0.57 -0.1 43,104 + OKGIIK_00165 0.57 +0.1 43,104 + OKGIIK_00165 0.57 +0.8 43,104 + OKGIIK_00165 0.57 +0.6 43,105 - OKGIIK_00165 0.58 +1.9 43,105 - OKGIIK_00165 0.58 +0.1 43,105 - OKGIIK_00165 0.58 +0.3 43,105 - OKGIIK_00165 0.58 +0.9 43,105 - OKGIIK_00165 0.58 +0.6 43,105 - OKGIIK_00165 0.58 +0.1 43,105 - OKGIIK_00165 0.58 -0.1 43,105 - OKGIIK_00165 0.58 -0.3 43,105 - OKGIIK_00165 0.58 +0.2 43,230 + OKGIIK_00165 0.74 +0.8 43,230 + OKGIIK_00165 0.74 +0.3 43,231 - OKGIIK_00165 0.74 -0.2 43,431 + -0.5 43,431 + +0.2 43,431 + +0.9 43,431 + +1.5 43,448 + +0.7 43,448 + +0.3 43,448 + -1.7 43,449 - -0.0 43,449 - +1.0 43,489 + -1.5 43,490 - -0.7 43,537 + +0.2 43,538 - +0.5 43,538 - -2.0 43,562 + +0.1 43,562 + -0.1 43,562 + -0.3 43,562 + -0.1 43,562 + +0.3 43,563 - -0.3 43,563 - -1.3 43,563 - -0.4 43,563 - +0.4 43,563 - -0.6 43,563 - -0.3 43,563 - +0.5 43,563 - -0.2 43,565 + -0.9 43,565 + -1.1 43,565 + +0.5 43,565 + -0.3 43,565 + -0.2 43,565 + -0.1 43,565 + +0.2 43,565 + +1.1 43,565 + +0.3 43,565 + +0.9 43,565 + -1.3 43,565 + -2.9 43,565 + -0.1 43,565 + -0.4 43,565 + +0.5 43,565 + +0.9 43,565 + +0.3 43,566 - -1.5 43,566 - +0.5 43,566 - -0.4 43,566 - +0.3 43,566 - -1.3 43,566 - -1.9 43,566 - -1.9 43,566 - +0.8 43,566 - +1.7 43,566 - -1.3
Or see this region's nucleotide sequence