Strain Fitness in Pseudomonas sp. DMC3 around GFF980

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF979 and GFF980 are separated by 163 nucleotidesGFF980 and GFF981 are separated by 21 nucleotides GFF979 - putative FAD-linked oxidoreductase, at 316,562 to 318,061 GFF979 GFF980 - Lipase 1, at 318,225 to 319,151 GFF980 GFF981 - Baeyer-Villiger monooxygenase, at 319,173 to 320,627 GFF981 Position (kb) 318 319 320Strain fitness (log2 ratio) -2 -1 0 1at 317.227 kb on + strand, within GFF979at 317.228 kb on - strand, within GFF979at 317.382 kb on - strand, within GFF979at 317.485 kb on + strand, within GFF979at 317.548 kb on - strand, within GFF979at 317.632 kb on - strand, within GFF979at 317.632 kb on - strand, within GFF979at 317.632 kb on - strand, within GFF979at 317.632 kb on - strand, within GFF979at 317.634 kb on + strand, within GFF979at 317.635 kb on - strand, within GFF979at 317.635 kb on - strand, within GFF979at 317.635 kb on - strand, within GFF979at 317.932 kb on - strandat 318.048 kb on + strandat 318.048 kb on + strandat 318.117 kb on - strandat 318.117 kb on - strandat 318.267 kb on - strandat 318.267 kb on - strandat 318.474 kb on + strand, within GFF980at 318.474 kb on + strand, within GFF980at 318.497 kb on - strand, within GFF980at 318.562 kb on + strand, within GFF980at 318.605 kb on + strand, within GFF980at 318.728 kb on - strand, within GFF980at 318.820 kb on + strand, within GFF980at 318.973 kb on + strand, within GFF980at 318.974 kb on - strand, within GFF980at 319.039 kb on + strand, within GFF980at 319.040 kb on - strand, within GFF980at 319.166 kb on + strandat 319.166 kb on + strandat 319.167 kb on - strandat 319.184 kb on + strandat 319.184 kb on + strandat 319.185 kb on - strandat 319.222 kb on + strandat 319.222 kb on + strandat 319.223 kb on - strandat 319.223 kb on - strandat 319.342 kb on + strand, within GFF981at 319.342 kb on + strand, within GFF981at 319.342 kb on + strand, within GFF981at 319.343 kb on - strand, within GFF981at 319.343 kb on - strand, within GFF981at 319.343 kb on - strand, within GFF981at 319.343 kb on - strand, within GFF981at 319.346 kb on + strand, within GFF981at 319.346 kb on + strand, within GFF981at 319.346 kb on + strand, within GFF981at 319.347 kb on - strand, within GFF981at 319.347 kb on - strand, within GFF981at 319.347 kb on - strand, within GFF981at 319.420 kb on + strand, within GFF981at 319.421 kb on - strand, within GFF981at 319.421 kb on - strand, within GFF981at 319.421 kb on - strand, within GFF981at 319.490 kb on + strand, within GFF981at 319.528 kb on + strand, within GFF981at 319.671 kb on - strand, within GFF981at 319.753 kb on + strand, within GFF981at 319.754 kb on - strand, within GFF981at 319.754 kb on - strand, within GFF981at 319.754 kb on - strand, within GFF981at 319.754 kb on - strand, within GFF981at 319.754 kb on - strand, within GFF981at 319.754 kb on - strand, within GFF981at 319.928 kb on - strand, within GFF981at 319.951 kb on + strand, within GFF981at 319.952 kb on - strand, within GFF981at 320.137 kb on + strand, within GFF981at 320.138 kb on - strand, within GFF981at 320.138 kb on - strand, within GFF981at 320.138 kb on - strand, within GFF981

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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317,227 + GFF979 0.44 -0.4
317,228 - GFF979 0.44 -0.6
317,382 - GFF979 0.55 -0.7
317,485 + GFF979 0.62 +0.6
317,548 - GFF979 0.66 +1.0
317,632 - GFF979 0.71 -1.4
317,632 - GFF979 0.71 +0.4
317,632 - GFF979 0.71 -0.9
317,632 - GFF979 0.71 +1.1
317,634 + GFF979 0.71 -1.3
317,635 - GFF979 0.72 -0.1
317,635 - GFF979 0.72 -0.4
317,635 - GFF979 0.72 -0.4
317,932 - -0.3
318,048 + -0.5
318,048 + +1.0
318,117 - -1.5
318,117 - -0.3
318,267 - -1.0
318,267 - -0.3
318,474 + GFF980 0.27 +0.1
318,474 + GFF980 0.27 -0.3
318,497 - GFF980 0.29 +0.4
318,562 + GFF980 0.36 +0.7
318,605 + GFF980 0.41 +0.0
318,728 - GFF980 0.54 -0.8
318,820 + GFF980 0.64 -0.8
318,973 + GFF980 0.81 -0.7
318,974 - GFF980 0.81 -1.3
319,039 + GFF980 0.88 -0.5
319,040 - GFF980 0.88 +1.1
319,166 + -0.1
319,166 + +0.9
319,167 - -0.9
319,184 + -0.3
319,184 + +0.4
319,185 - +0.3
319,222 + +1.5
319,222 + -0.1
319,223 - +0.0
319,223 - -0.8
319,342 + GFF981 0.12 +1.3
319,342 + GFF981 0.12 +0.8
319,342 + GFF981 0.12 +0.8
319,343 - GFF981 0.12 +0.6
319,343 - GFF981 0.12 -0.2
319,343 - GFF981 0.12 -0.1
319,343 - GFF981 0.12 -0.0
319,346 + GFF981 0.12 -0.2
319,346 + GFF981 0.12 -2.0
319,346 + GFF981 0.12 -0.4
319,347 - GFF981 0.12 +0.1
319,347 - GFF981 0.12 -0.9
319,347 - GFF981 0.12 +1.1
319,420 + GFF981 0.17 +0.6
319,421 - GFF981 0.17 -0.2
319,421 - GFF981 0.17 +0.0
319,421 - GFF981 0.17 +0.2
319,490 + GFF981 0.22 -1.6
319,528 + GFF981 0.24 +0.4
319,671 - GFF981 0.34 -0.6
319,753 + GFF981 0.40 -0.7
319,754 - GFF981 0.40 +0.7
319,754 - GFF981 0.40 -0.2
319,754 - GFF981 0.40 -1.3
319,754 - GFF981 0.40 -0.4
319,754 - GFF981 0.40 -0.4
319,754 - GFF981 0.40 +0.3
319,928 - GFF981 0.52 +0.1
319,951 + GFF981 0.53 -1.0
319,952 - GFF981 0.54 -0.6
320,137 + GFF981 0.66 -1.8
320,138 - GFF981 0.66 +0.5
320,138 - GFF981 0.66 -0.2
320,138 - GFF981 0.66 +0.4

Or see this region's nucleotide sequence