Strain Fitness in Pseudomonas sp. DMC3 around GFF976

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF975 and GFF976 are separated by 295 nucleotidesGFF976 and GFF977 are separated by 88 nucleotides GFF975 - hypothetical protein, at 311,675 to 312,517 GFF975 GFF976 - putative protein, at 312,813 to 314,201 GFF976 GFF977 - Lactate utilization protein A, at 314,290 to 315,510 GFF977 Position (kb) 312 313 314 315Strain fitness (log2 ratio) -2 -1 0 1 2at 311.815 kb on - strand, within GFF975at 311.887 kb on - strand, within GFF975at 312.178 kb on - strand, within GFF975at 312.262 kb on + strand, within GFF975at 312.324 kb on - strand, within GFF975at 312.327 kb on + strand, within GFF975at 312.328 kb on - strand, within GFF975at 312.442 kb on - strandat 312.442 kb on - strandat 312.481 kb on + strandat 312.485 kb on + strandat 312.485 kb on + strandat 312.486 kb on - strandat 312.486 kb on - strandat 312.486 kb on - strandat 312.486 kb on - strandat 312.569 kb on + strandat 312.569 kb on + strandat 312.580 kb on + strandat 312.580 kb on + strandat 312.581 kb on - strandat 312.619 kb on + strandat 312.647 kb on - strandat 312.763 kb on + strandat 312.792 kb on + strandat 312.792 kb on + strandat 312.793 kb on - strandat 312.797 kb on + strandat 312.797 kb on + strandat 312.798 kb on - strandat 312.798 kb on - strandat 312.798 kb on - strandat 312.798 kb on - strandat 312.878 kb on - strandat 312.878 kb on - strandat 313.021 kb on + strand, within GFF976at 313.021 kb on + strand, within GFF976at 313.022 kb on - strand, within GFF976at 313.022 kb on - strand, within GFF976at 313.045 kb on + strand, within GFF976at 313.046 kb on - strand, within GFF976at 313.046 kb on - strand, within GFF976at 313.046 kb on - strand, within GFF976at 313.121 kb on - strand, within GFF976at 313.129 kb on + strand, within GFF976at 313.130 kb on - strand, within GFF976at 313.130 kb on - strand, within GFF976at 313.130 kb on - strand, within GFF976at 313.130 kb on - strand, within GFF976at 313.273 kb on + strand, within GFF976at 313.273 kb on + strand, within GFF976at 313.273 kb on + strand, within GFF976at 313.274 kb on - strand, within GFF976at 313.274 kb on - strand, within GFF976at 313.458 kb on - strand, within GFF976at 313.520 kb on + strand, within GFF976at 313.533 kb on - strand, within GFF976at 313.533 kb on - strand, within GFF976at 313.906 kb on + strand, within GFF976at 313.909 kb on + strand, within GFF976at 314.131 kb on + strandat 314.131 kb on + strandat 314.132 kb on - strandat 314.132 kb on - strandat 314.283 kb on - strandat 314.471 kb on + strand, within GFF977at 314.471 kb on + strand, within GFF977at 314.471 kb on + strand, within GFF977at 314.629 kb on + strand, within GFF977at 314.629 kb on + strand, within GFF977at 314.630 kb on - strand, within GFF977at 314.630 kb on - strand, within GFF977at 314.630 kb on - strand, within GFF977at 314.656 kb on + strand, within GFF977at 314.657 kb on - strand, within GFF977at 314.657 kb on - strand, within GFF977at 314.709 kb on - strand, within GFF977at 314.709 kb on - strand, within GFF977at 314.739 kb on - strand, within GFF977at 314.870 kb on + strand, within GFF977at 314.870 kb on + strand, within GFF977at 314.958 kb on + strand, within GFF977at 314.958 kb on + strand, within GFF977

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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311,815 - GFF975 0.17 +0.1
311,887 - GFF975 0.25 +0.3
312,178 - GFF975 0.60 -0.7
312,262 + GFF975 0.70 +0.1
312,324 - GFF975 0.77 +1.0
312,327 + GFF975 0.77 +1.5
312,328 - GFF975 0.77 -0.1
312,442 - +0.3
312,442 - -1.1
312,481 + -1.8
312,485 + -0.4
312,485 + +0.5
312,486 - +0.8
312,486 - -1.0
312,486 - +0.0
312,486 - +0.4
312,569 + -1.7
312,569 + +0.7
312,580 + -0.1
312,580 + +0.7
312,581 - +0.7
312,619 + +0.1
312,647 - -0.2
312,763 + +2.1
312,792 + -0.2
312,792 + +0.7
312,793 - +0.6
312,797 + -0.8
312,797 + +1.1
312,798 - +0.2
312,798 - -1.5
312,798 - -0.5
312,798 - +0.2
312,878 - -0.5
312,878 - -0.1
313,021 + GFF976 0.15 -0.3
313,021 + GFF976 0.15 -1.1
313,022 - GFF976 0.15 -0.4
313,022 - GFF976 0.15 -0.3
313,045 + GFF976 0.17 -0.1
313,046 - GFF976 0.17 +0.3
313,046 - GFF976 0.17 -0.6
313,046 - GFF976 0.17 -1.3
313,121 - GFF976 0.22 +1.3
313,129 + GFF976 0.23 -0.2
313,130 - GFF976 0.23 -0.8
313,130 - GFF976 0.23 -0.5
313,130 - GFF976 0.23 -0.7
313,130 - GFF976 0.23 +0.1
313,273 + GFF976 0.33 -0.2
313,273 + GFF976 0.33 -1.0
313,273 + GFF976 0.33 -0.2
313,274 - GFF976 0.33 -0.4
313,274 - GFF976 0.33 -0.1
313,458 - GFF976 0.46 +0.8
313,520 + GFF976 0.51 -0.1
313,533 - GFF976 0.52 +0.0
313,533 - GFF976 0.52 +0.1
313,906 + GFF976 0.79 +1.2
313,909 + GFF976 0.79 +0.5
314,131 + -1.2
314,131 + -0.4
314,132 - +0.4
314,132 - +1.4
314,283 - +0.3
314,471 + GFF977 0.15 -0.2
314,471 + GFF977 0.15 -0.0
314,471 + GFF977 0.15 +0.4
314,629 + GFF977 0.28 -0.7
314,629 + GFF977 0.28 -0.2
314,630 - GFF977 0.28 +0.2
314,630 - GFF977 0.28 -0.0
314,630 - GFF977 0.28 +1.6
314,656 + GFF977 0.30 -0.7
314,657 - GFF977 0.30 +0.8
314,657 - GFF977 0.30 -1.1
314,709 - GFF977 0.34 +0.1
314,709 - GFF977 0.34 -0.4
314,739 - GFF977 0.37 -0.5
314,870 + GFF977 0.48 -0.9
314,870 + GFF977 0.48 -1.9
314,958 + GFF977 0.55 -0.5
314,958 + GFF977 0.55 -0.1

Or see this region's nucleotide sequence