Strain Fitness in Pseudomonas sp. DMC3 around GFF86

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF85 and GFF86 overlap by 4 nucleotidesGFF86 and GFF87 are separated by 346 nucleotidesGFF87 and GFF88 overlap by 4 nucleotides GFF85 - hypothetical protein, at 98,425 to 100,359 GFF85 GFF86 - DNA polymerase III PolC-type, at 100,356 to 101,063 GFF86 GFF87 - putative RNA polymerase sigma factor FecI, at 101,410 to 101,886 GFF87 GFF88 - Protein FecR, at 101,883 to 102,857 GFF88 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 99.705 kb on + strand, within GFF85at 99.705 kb on + strand, within GFF85at 99.705 kb on + strand, within GFF85at 99.705 kb on + strand, within GFF85at 99.706 kb on - strand, within GFF85at 99.832 kb on + strand, within GFF85at 99.832 kb on + strand, within GFF85at 100.135 kb on - strand, within GFF85at 100.135 kb on - strand, within GFF85at 100.168 kb on + strandat 100.169 kb on - strandat 100.180 kb on + strandat 100.180 kb on + strandat 100.181 kb on - strandat 100.181 kb on - strandat 100.181 kb on - strandat 100.181 kb on - strandat 100.244 kb on - strandat 100.244 kb on - strandat 100.244 kb on - strandat 100.355 kb on + strandat 100.355 kb on + strandat 100.355 kb on + strandat 100.356 kb on - strandat 100.511 kb on + strand, within GFF86at 100.512 kb on - strand, within GFF86at 100.512 kb on - strand, within GFF86at 100.793 kb on + strand, within GFF86at 100.793 kb on + strand, within GFF86at 100.793 kb on + strand, within GFF86at 100.793 kb on + strand, within GFF86at 100.794 kb on - strand, within GFF86at 100.794 kb on - strand, within GFF86at 100.794 kb on - strand, within GFF86at 100.794 kb on - strand, within GFF86at 100.794 kb on - strand, within GFF86at 100.840 kb on + strand, within GFF86at 100.840 kb on + strand, within GFF86at 100.840 kb on + strand, within GFF86at 100.841 kb on - strand, within GFF86at 100.841 kb on - strand, within GFF86at 100.841 kb on - strand, within GFF86at 100.841 kb on - strand, within GFF86at 100.841 kb on - strand, within GFF86at 100.995 kb on + strandat 100.996 kb on - strandat 100.996 kb on - strandat 101.061 kb on + strandat 101.140 kb on + strandat 101.140 kb on + strandat 101.140 kb on + strandat 101.140 kb on + strandat 101.141 kb on - strandat 101.141 kb on - strandat 101.141 kb on - strandat 101.167 kb on + strandat 101.186 kb on - strandat 101.329 kb on + strandat 101.338 kb on + strandat 101.339 kb on - strandat 101.413 kb on + strandat 101.413 kb on + strandat 101.414 kb on - strandat 101.620 kb on + strand, within GFF87at 101.620 kb on + strand, within GFF87at 101.621 kb on - strand, within GFF87at 101.755 kb on + strand, within GFF87at 101.755 kb on + strand, within GFF87at 101.755 kb on + strand, within GFF87at 101.755 kb on + strand, within GFF87at 101.755 kb on + strand, within GFF87at 101.756 kb on - strand, within GFF87at 101.756 kb on - strand, within GFF87at 101.756 kb on - strand, within GFF87at 101.756 kb on - strand, within GFF87at 101.757 kb on + strand, within GFF87at 101.758 kb on - strand, within GFF87at 101.758 kb on - strand, within GFF87at 101.857 kb on + strandat 101.857 kb on + strandat 101.857 kb on + strandat 101.857 kb on + strandat 101.857 kb on + strandat 101.857 kb on + strandat 101.857 kb on + strandat 101.858 kb on - strandat 101.858 kb on - strandat 101.858 kb on - strandat 101.858 kb on - strandat 101.870 kb on - strandat 101.870 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
99,705 + GFF85 0.66 +1.4
99,705 + GFF85 0.66 -0.7
99,705 + GFF85 0.66 +0.6
99,705 + GFF85 0.66 +0.1
99,706 - GFF85 0.66 -0.1
99,832 + GFF85 0.73 +2.1
99,832 + GFF85 0.73 -0.1
100,135 - GFF85 0.88 +0.0
100,135 - GFF85 0.88 +1.2
100,168 + -0.5
100,169 - +0.0
100,180 + -2.0
100,180 + -0.4
100,181 - +0.4
100,181 - +0.2
100,181 - +1.5
100,181 - -0.9
100,244 - -0.3
100,244 - -1.5
100,244 - +0.4
100,355 + +0.8
100,355 + -1.4
100,355 + -0.2
100,356 - +0.6
100,511 + GFF86 0.22 -1.0
100,512 - GFF86 0.22 +0.3
100,512 - GFF86 0.22 -0.2
100,793 + GFF86 0.62 -0.4
100,793 + GFF86 0.62 +0.6
100,793 + GFF86 0.62 -0.7
100,793 + GFF86 0.62 -0.0
100,794 - GFF86 0.62 -2.1
100,794 - GFF86 0.62 -0.2
100,794 - GFF86 0.62 -2.3
100,794 - GFF86 0.62 -0.5
100,794 - GFF86 0.62 +1.8
100,840 + GFF86 0.68 +0.1
100,840 + GFF86 0.68 +0.4
100,840 + GFF86 0.68 -0.4
100,841 - GFF86 0.69 +0.4
100,841 - GFF86 0.69 -0.6
100,841 - GFF86 0.69 +0.4
100,841 - GFF86 0.69 +0.8
100,841 - GFF86 0.69 +0.4
100,995 + -0.8
100,996 - +0.2
100,996 - -1.3
101,061 + -0.6
101,140 + -1.1
101,140 + +0.8
101,140 + +0.5
101,140 + -0.3
101,141 - -0.5
101,141 - -0.3
101,141 - +0.9
101,167 + +0.0
101,186 - -0.0
101,329 + +0.8
101,338 + -1.1
101,339 - -0.5
101,413 + -0.4
101,413 + -1.3
101,414 - -0.7
101,620 + GFF87 0.44 +0.3
101,620 + GFF87 0.44 -0.8
101,621 - GFF87 0.44 -0.3
101,755 + GFF87 0.72 +0.7
101,755 + GFF87 0.72 +0.2
101,755 + GFF87 0.72 -0.2
101,755 + GFF87 0.72 -1.3
101,755 + GFF87 0.72 +0.9
101,756 - GFF87 0.73 +0.9
101,756 - GFF87 0.73 -0.5
101,756 - GFF87 0.73 +0.4
101,756 - GFF87 0.73 +0.3
101,757 + GFF87 0.73 -0.2
101,758 - GFF87 0.73 +1.1
101,758 - GFF87 0.73 -1.2
101,857 + +0.2
101,857 + -0.8
101,857 + +0.8
101,857 + +0.4
101,857 + -0.8
101,857 + -2.5
101,857 + -0.3
101,858 - +0.4
101,858 - -1.7
101,858 - -1.4
101,858 - +0.3
101,870 - -0.8
101,870 - -0.0

Or see this region's nucleotide sequence