Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF785 and GFF786 are separated by 2 nucleotides GFF786 and GFF787 are separated by 95 nucleotides GFF787 and GFF788 are separated by 55 nucleotides
GFF785 - 3-isopropylmalate dehydratase large subunit, at 142,073 to 143,503
GFF785
GFF786 - 3-isopropylmalate dehydratase small subunit 1, at 143,506 to 144,150
GFF786
GFF787 - putative methyltransferase YcgJ, at 144,246 to 145,013
GFF787
GFF788 - 3-isopropylmalate dehydrogenase, at 145,069 to 146,151
GFF788
Position (kb) 143
144
145 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 142.811 kb on + strand, within GFF785 at 142.811 kb on + strand, within GFF785 at 143.060 kb on + strand, within GFF785 at 143.060 kb on + strand, within GFF785 at 143.060 kb on + strand, within GFF785 at 143.060 kb on + strand, within GFF785 at 143.061 kb on - strand, within GFF785 at 143.112 kb on + strand, within GFF785 at 143.112 kb on + strand, within GFF785 at 143.113 kb on - strand, within GFF785 at 143.380 kb on + strand at 143.414 kb on - strand at 143.501 kb on + strand at 143.501 kb on + strand at 143.502 kb on - strand at 143.502 kb on - strand at 143.742 kb on - strand, within GFF786 at 143.742 kb on - strand, within GFF786 at 143.742 kb on - strand, within GFF786 at 143.742 kb on - strand, within GFF786 at 143.810 kb on - strand, within GFF786 at 143.839 kb on + strand, within GFF786 at 143.922 kb on + strand, within GFF786 at 144.004 kb on + strand, within GFF786 at 144.005 kb on - strand, within GFF786 at 144.005 kb on - strand, within GFF786 at 144.005 kb on - strand, within GFF786 at 144.164 kb on + strand at 144.164 kb on + strand at 144.164 kb on + strand at 144.165 kb on - strand at 144.165 kb on - strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.212 kb on + strand at 144.231 kb on + strand at 144.310 kb on - strand at 144.310 kb on - strand at 144.310 kb on - strand at 144.355 kb on + strand, within GFF787 at 144.355 kb on + strand, within GFF787 at 144.356 kb on - strand, within GFF787 at 144.356 kb on - strand, within GFF787 at 144.356 kb on - strand, within GFF787 at 144.463 kb on - strand, within GFF787 at 144.533 kb on + strand, within GFF787 at 144.723 kb on + strand, within GFF787 at 144.723 kb on + strand, within GFF787 at 144.723 kb on + strand, within GFF787 at 144.723 kb on + strand, within GFF787 at 144.724 kb on - strand, within GFF787 at 144.724 kb on - strand, within GFF787 at 144.724 kb on - strand, within GFF787 at 144.772 kb on - strand, within GFF787 at 144.948 kb on + strand at 144.959 kb on - strand at 144.994 kb on + strand at 144.994 kb on + strand at 144.994 kb on + strand at 144.995 kb on - strand at 144.995 kb on - strand at 144.995 kb on - strand at 144.995 kb on - strand at 145.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 142,811 + GFF785 0.52 -0.5 142,811 + GFF785 0.52 -1.3 143,060 + GFF785 0.69 -2.8 143,060 + GFF785 0.69 -1.9 143,060 + GFF785 0.69 -1.3 143,060 + GFF785 0.69 -1.3 143,061 - GFF785 0.69 -3.9 143,112 + GFF785 0.73 -2.2 143,112 + GFF785 0.73 -2.2 143,113 - GFF785 0.73 -2.5 143,380 + -2.7 143,414 - -3.2 143,501 + -0.3 143,501 + +0.4 143,502 - -1.5 143,502 - -2.4 143,742 - GFF786 0.37 -2.1 143,742 - GFF786 0.37 -1.6 143,742 - GFF786 0.37 -1.9 143,742 - GFF786 0.37 -1.6 143,810 - GFF786 0.47 +0.8 143,839 + GFF786 0.52 -2.1 143,922 + GFF786 0.64 -3.6 144,004 + GFF786 0.77 -2.2 144,005 - GFF786 0.77 -1.5 144,005 - GFF786 0.77 -3.2 144,005 - GFF786 0.77 -2.1 144,164 + -0.3 144,164 + -0.1 144,164 + +0.6 144,165 - +1.2 144,165 - -2.4 144,212 + -0.3 144,212 + +0.0 144,212 + +0.3 144,231 + +1.4 144,310 - -1.8 144,310 - -0.5 144,310 - +1.1 144,355 + GFF787 0.14 +0.2 144,355 + GFF787 0.14 +1.0 144,356 - GFF787 0.14 -0.6 144,356 - GFF787 0.14 -1.3 144,356 - GFF787 0.14 -0.6 144,463 - GFF787 0.28 -0.6 144,533 + GFF787 0.37 +0.1 144,723 + GFF787 0.62 -0.3 144,723 + GFF787 0.62 +0.7 144,723 + GFF787 0.62 +0.6 144,723 + GFF787 0.62 +0.0 144,724 - GFF787 0.62 -1.3 144,724 - GFF787 0.62 -1.0 144,724 - GFF787 0.62 -0.8 144,772 - GFF787 0.68 -1.9 144,948 + +0.8 144,959 - -1.1 144,994 + +0.5 144,994 + +0.5 144,994 + +0.2 144,995 - -1.4 144,995 - -0.3 144,995 - -0.1 144,995 - -0.3 145,104 + -2.1
Or see this region's nucleotide sequence