Strain Fitness in Pseudomonas sp. DMC3 around GFF735

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF733 and GFF734 are separated by 209 nucleotidesGFF734 and GFF735 are separated by 89 nucleotidesGFF735 and GFF736 overlap by 32 nucleotidesGFF736 and GFF737 are separated by 90 nucleotides GFF733 - hypothetical protein, at 50,868 to 51,659 GFF733 GFF734 - Isonitrile hydratase, at 51,869 to 52,555 GFF734 GFF735 - HTH-type transcriptional regulator CdhR, at 52,645 to 53,628 GFF735 GFF736 - Epoxide hydrolase A, at 53,597 to 54,484 GFF736 GFF737 - hypothetical protein, at 54,575 to 55,207 GFF737 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.904 kb on + strandat 51.905 kb on - strandat 52.015 kb on - strand, within GFF734at 52.186 kb on - strand, within GFF734at 52.186 kb on - strand, within GFF734at 52.269 kb on + strand, within GFF734at 52.394 kb on - strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.458 kb on - strand, within GFF734at 52.458 kb on - strand, within GFF734at 52.484 kb on + strand, within GFF734at 52.484 kb on + strand, within GFF734at 52.491 kb on + strandat 52.491 kb on + strandat 52.492 kb on - strandat 52.594 kb on + strandat 52.594 kb on + strandat 52.595 kb on - strandat 52.595 kb on - strandat 52.603 kb on - strandat 52.603 kb on - strandat 52.603 kb on - strandat 52.650 kb on + strandat 52.680 kb on + strandat 52.680 kb on + strandat 52.765 kb on + strand, within GFF735at 53.692 kb on - strand, within GFF736at 53.692 kb on - strand, within GFF736at 53.999 kb on - strand, within GFF736at 53.999 kb on - strand, within GFF736at 53.999 kb on - strand, within GFF736at 53.999 kb on - strand, within GFF736at 54.030 kb on + strand, within GFF736at 54.031 kb on - strand, within GFF736at 54.033 kb on + strand, within GFF736at 54.033 kb on + strand, within GFF736at 54.034 kb on - strand, within GFF736at 54.034 kb on - strand, within GFF736at 54.040 kb on - strand, within GFF736at 54.106 kb on - strand, within GFF736at 54.160 kb on + strand, within GFF736at 54.160 kb on + strand, within GFF736at 54.160 kb on + strand, within GFF736at 54.161 kb on - strand, within GFF736at 54.161 kb on - strand, within GFF736at 54.186 kb on + strand, within GFF736at 54.306 kb on + strand, within GFF736at 54.318 kb on + strand, within GFF736at 54.318 kb on + strand, within GFF736at 54.444 kb on + strandat 54.532 kb on - strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.573 kb on - strandat 54.573 kb on - strandat 54.573 kb on - strandat 54.573 kb on - strandat 54.573 kb on - strandat 54.598 kb on + strandat 54.598 kb on + strandat 54.598 kb on + strandat 54.598 kb on + strandat 54.599 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
51,904 + -0.8
51,905 - -0.2
52,015 - GFF734 0.21 +0.5
52,186 - GFF734 0.46 -1.8
52,186 - GFF734 0.46 -0.7
52,269 + GFF734 0.58 +1.8
52,394 - GFF734 0.76 +0.8
52,457 + GFF734 0.86 -0.3
52,457 + GFF734 0.86 +0.4
52,457 + GFF734 0.86 -0.4
52,458 - GFF734 0.86 +0.4
52,458 - GFF734 0.86 -0.5
52,484 + GFF734 0.90 -0.2
52,484 + GFF734 0.90 -2.4
52,491 + +0.1
52,491 + -0.3
52,492 - -0.2
52,594 + +0.1
52,594 + +0.2
52,595 - -0.2
52,595 - -2.3
52,603 - +0.5
52,603 - -1.2
52,603 - -0.8
52,650 + +1.2
52,680 + -0.8
52,680 + +0.2
52,765 + GFF735 0.12 -0.1
53,692 - GFF736 0.11 +2.0
53,692 - GFF736 0.11 +1.5
53,999 - GFF736 0.45 -1.0
53,999 - GFF736 0.45 -0.5
53,999 - GFF736 0.45 -1.5
53,999 - GFF736 0.45 +0.3
54,030 + GFF736 0.49 +0.5
54,031 - GFF736 0.49 -1.0
54,033 + GFF736 0.49 -0.1
54,033 + GFF736 0.49 -0.6
54,034 - GFF736 0.49 +0.4
54,034 - GFF736 0.49 -0.7
54,040 - GFF736 0.50 -0.0
54,106 - GFF736 0.57 +0.3
54,160 + GFF736 0.63 -0.0
54,160 + GFF736 0.63 +0.0
54,160 + GFF736 0.63 +0.1
54,161 - GFF736 0.64 -1.8
54,161 - GFF736 0.64 -0.5
54,186 + GFF736 0.66 -0.3
54,306 + GFF736 0.80 +0.8
54,318 + GFF736 0.81 +0.5
54,318 + GFF736 0.81 -0.9
54,444 + -0.6
54,532 - +0.9
54,572 + -0.7
54,572 + +0.2
54,572 + -1.0
54,572 + -1.4
54,572 + +0.4
54,572 + -0.3
54,572 + -1.3
54,572 + -0.5
54,572 + -0.2
54,573 - +0.0
54,573 - -0.4
54,573 - -0.5
54,573 - -1.0
54,573 - -0.2
54,598 + -0.3
54,598 + -0.3
54,598 + +0.6
54,598 + -0.3
54,599 - +0.3

Or see this region's nucleotide sequence