Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF707 and GFF708 are separated by 66 nucleotides GFF708 and GFF709 are separated by 207 nucleotides GFF709 and GFF710 are separated by 152 nucleotides GFF710 and GFF711 are separated by 75 nucleotides
GFF707 - NADPH-dependent curcumin reductase, at 25,059 to 26,093
GFF707
GFF708 - Recombination protein RecR, at 26,160 to 26,762
GFF708
GFF709 - Acyl-CoA dehydrogenase, at 26,970 to 28,118
GFF709
GFF710 - Adenine phosphoribosyltransferase, at 28,271 to 28,819
GFF710
GFF711 - Transcriptional activator protein Anr, at 28,895 to 29,629
GFF711
Position (kb) 26
27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2 at 26.121 kb on + strand at 26.122 kb on - strand at 26.123 kb on + strand at 26.123 kb on + strand at 26.124 kb on - strand at 26.124 kb on - strand at 26.143 kb on - strand at 26.156 kb on - strand at 26.156 kb on - strand at 26.280 kb on - strand, within GFF708 at 26.411 kb on - strand, within GFF708 at 26.411 kb on - strand, within GFF708 at 26.433 kb on + strand, within GFF708 at 26.466 kb on + strand, within GFF708 at 26.467 kb on - strand, within GFF708 at 26.549 kb on - strand, within GFF708 at 26.549 kb on - strand, within GFF708 at 26.568 kb on - strand, within GFF708 at 26.622 kb on + strand, within GFF708 at 26.622 kb on + strand, within GFF708 at 26.622 kb on + strand, within GFF708 at 26.622 kb on + strand, within GFF708 at 26.623 kb on - strand, within GFF708 at 26.623 kb on - strand, within GFF708 at 26.623 kb on - strand, within GFF708 at 26.745 kb on - strand at 26.750 kb on + strand at 26.751 kb on - strand at 26.751 kb on - strand at 26.751 kb on - strand at 26.751 kb on - strand at 26.751 kb on - strand at 26.760 kb on + strand at 26.761 kb on - strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.833 kb on + strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.834 kb on - strand at 26.988 kb on + strand at 26.988 kb on + strand at 27.102 kb on + strand, within GFF709 at 27.102 kb on + strand, within GFF709 at 27.103 kb on - strand, within GFF709 at 27.478 kb on - strand, within GFF709 at 27.518 kb on + strand, within GFF709 at 28.005 kb on + strand at 28.005 kb on + strand at 28.005 kb on + strand at 28.005 kb on + strand at 28.005 kb on + strand at 28.006 kb on - strand at 28.036 kb on - strand at 28.116 kb on + strand at 28.116 kb on + strand at 28.261 kb on + strand at 28.262 kb on - strand at 28.272 kb on + strand at 28.272 kb on + strand at 28.277 kb on - strand at 28.282 kb on + strand at 28.282 kb on + strand at 28.283 kb on - strand at 28.322 kb on - strand at 28.530 kb on + strand, within GFF710 at 28.561 kb on + strand, within GFF710 at 28.562 kb on - strand, within GFF710 at 28.562 kb on - strand, within GFF710 at 28.562 kb on - strand, within GFF710 at 28.577 kb on + strand, within GFF710 at 28.603 kb on - strand, within GFF710 at 28.610 kb on + strand, within GFF710 at 28.674 kb on + strand, within GFF710 at 28.674 kb on + strand, within GFF710 at 28.675 kb on - strand, within GFF710 at 28.853 kb on + strand at 28.853 kb on + strand at 28.853 kb on + strand at 28.854 kb on - strand at 28.854 kb on - strand at 28.854 kb on - strand at 28.854 kb on - strand at 28.855 kb on + strand at 28.855 kb on + strand at 29.037 kb on + strand, within GFF711 at 29.038 kb on - strand, within GFF711 at 29.038 kb on - strand, within GFF711
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 26,121 + -0.5 26,122 - +1.8 26,123 + -1.0 26,123 + +0.3 26,124 - +0.7 26,124 - +1.0 26,143 - +0.6 26,156 - -2.1 26,156 - +0.5 26,280 - GFF708 0.20 -0.7 26,411 - GFF708 0.42 -2.0 26,411 - GFF708 0.42 -1.5 26,433 + GFF708 0.45 -2.1 26,466 + GFF708 0.51 +0.1 26,467 - GFF708 0.51 -1.5 26,549 - GFF708 0.65 -1.6 26,549 - GFF708 0.65 +0.5 26,568 - GFF708 0.68 -1.3 26,622 + GFF708 0.77 -1.1 26,622 + GFF708 0.77 -0.4 26,622 + GFF708 0.77 -0.4 26,622 + GFF708 0.77 -0.8 26,623 - GFF708 0.77 +0.5 26,623 - GFF708 0.77 -0.7 26,623 - GFF708 0.77 -0.6 26,745 - -0.5 26,750 + -1.6 26,751 - -2.0 26,751 - -1.3 26,751 - +2.1 26,751 - -0.1 26,751 - -0.6 26,760 + -0.8 26,761 - -1.1 26,833 + -0.9 26,833 + -0.5 26,833 + -0.1 26,833 + -1.4 26,833 + +0.5 26,833 + -1.0 26,833 + +1.3 26,833 + -0.4 26,833 + -0.5 26,833 + -0.4 26,833 + +0.1 26,833 + -0.6 26,833 + -0.3 26,833 + +2.1 26,833 + +0.0 26,833 + +0.1 26,833 + -0.7 26,833 + +1.0 26,833 + -1.3 26,834 - -0.5 26,834 - +0.1 26,834 - -0.5 26,834 - +0.3 26,834 - -0.1 26,834 - -0.1 26,834 - -0.5 26,834 - -0.2 26,834 - -0.2 26,834 - +0.1 26,834 - -1.4 26,834 - -0.1 26,834 - -0.3 26,834 - -0.5 26,834 - +0.4 26,834 - +0.2 26,834 - +1.3 26,834 - -0.8 26,834 - -0.6 26,988 + +0.4 26,988 + +0.4 27,102 + GFF709 0.11 -0.2 27,102 + GFF709 0.11 +0.2 27,103 - GFF709 0.12 -0.6 27,478 - GFF709 0.44 -1.3 27,518 + GFF709 0.48 -1.4 28,005 + +0.8 28,005 + -0.2 28,005 + -1.3 28,005 + +0.3 28,005 + -0.4 28,006 - -0.2 28,036 - -1.4 28,116 + +0.2 28,116 + -0.7 28,261 + -0.3 28,262 - -0.3 28,272 + +1.2 28,272 + -1.3 28,277 - -0.2 28,282 + +0.4 28,282 + +0.5 28,283 - -0.5 28,322 - +0.5 28,530 + GFF710 0.47 -0.3 28,561 + GFF710 0.53 -0.1 28,562 - GFF710 0.53 +0.4 28,562 - GFF710 0.53 +1.0 28,562 - GFF710 0.53 -0.6 28,577 + GFF710 0.56 -0.4 28,603 - GFF710 0.60 -0.2 28,610 + GFF710 0.62 -0.5 28,674 + GFF710 0.73 +1.3 28,674 + GFF710 0.73 -1.3 28,675 - GFF710 0.74 +0.4 28,853 + -0.7 28,853 + +0.1 28,853 + -0.8 28,854 - +0.5 28,854 - +0.4 28,854 - -0.7 28,854 - -1.0 28,855 + +0.2 28,855 + +0.5 29,037 + GFF711 0.19 -0.5 29,038 - GFF711 0.19 +0.9 29,038 - GFF711 0.19 +0.5
Or see this region's nucleotide sequence