Strain Fitness in Pseudomonas sp. DMC3 around GFF552

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF551 and GFF552 are separated by 7 nucleotidesGFF552 and GFF553 are separated by 104 nucleotides GFF551 - D-inositol 3-phosphate glycosyltransferase, at 612,937 to 614,067 GFF551 GFF552 - Maleylpyruvate isomerase, at 614,075 to 614,701 GFF552 GFF553 - HTH-type transcriptional regulator DmlR, at 614,806 to 615,732 GFF553 Position (kb) 614 615Strain fitness (log2 ratio) -2 -1 0 1 2at 613.208 kb on - strand, within GFF551at 613.279 kb on + strand, within GFF551at 613.279 kb on + strand, within GFF551at 613.279 kb on + strand, within GFF551at 613.279 kb on + strand, within GFF551at 613.280 kb on - strand, within GFF551at 613.280 kb on - strand, within GFF551at 613.280 kb on - strand, within GFF551at 613.280 kb on - strand, within GFF551at 613.293 kb on + strand, within GFF551at 613.294 kb on - strand, within GFF551at 613.321 kb on + strand, within GFF551at 613.322 kb on - strand, within GFF551at 613.384 kb on + strand, within GFF551at 613.384 kb on + strand, within GFF551at 613.384 kb on + strand, within GFF551at 613.385 kb on - strand, within GFF551at 613.437 kb on + strand, within GFF551at 613.437 kb on + strand, within GFF551at 613.437 kb on + strand, within GFF551at 613.438 kb on - strand, within GFF551at 613.441 kb on + strand, within GFF551at 613.442 kb on - strand, within GFF551at 613.442 kb on - strand, within GFF551at 613.546 kb on + strand, within GFF551at 613.549 kb on + strand, within GFF551at 613.549 kb on + strand, within GFF551at 613.549 kb on + strand, within GFF551at 613.549 kb on + strand, within GFF551at 613.550 kb on - strand, within GFF551at 613.550 kb on - strand, within GFF551at 613.550 kb on - strand, within GFF551at 613.550 kb on - strand, within GFF551at 613.550 kb on - strand, within GFF551at 613.563 kb on + strand, within GFF551at 613.564 kb on - strand, within GFF551at 613.594 kb on + strand, within GFF551at 613.726 kb on - strand, within GFF551at 613.729 kb on + strand, within GFF551at 613.730 kb on - strand, within GFF551at 613.798 kb on + strand, within GFF551at 613.799 kb on - strand, within GFF551at 613.799 kb on - strand, within GFF551at 613.799 kb on - strand, within GFF551at 613.851 kb on + strand, within GFF551at 613.887 kb on + strand, within GFF551at 613.887 kb on + strand, within GFF551at 613.985 kb on + strandat 613.986 kb on - strandat 614.026 kb on + strandat 614.026 kb on + strandat 614.026 kb on + strandat 614.027 kb on - strandat 614.027 kb on - strandat 614.027 kb on - strandat 614.059 kb on + strandat 614.059 kb on + strandat 614.060 kb on - strandat 614.169 kb on + strand, within GFF552at 614.170 kb on - strand, within GFF552at 614.211 kb on + strand, within GFF552at 614.211 kb on + strand, within GFF552at 614.211 kb on + strand, within GFF552at 614.211 kb on + strand, within GFF552at 614.211 kb on + strand, within GFF552at 614.211 kb on + strand, within GFF552at 614.212 kb on - strand, within GFF552at 614.212 kb on - strand, within GFF552at 614.217 kb on + strand, within GFF552at 614.217 kb on + strand, within GFF552at 614.218 kb on - strand, within GFF552at 614.218 kb on - strand, within GFF552at 614.218 kb on - strand, within GFF552at 614.259 kb on + strand, within GFF552at 614.259 kb on + strand, within GFF552at 614.260 kb on - strand, within GFF552at 614.260 kb on - strand, within GFF552at 614.260 kb on - strand, within GFF552at 614.260 kb on - strand, within GFF552at 614.481 kb on + strand, within GFF552at 614.566 kb on - strand, within GFF552at 614.683 kb on - strandat 614.683 kb on - strandat 614.921 kb on + strand, within GFF553at 614.921 kb on + strand, within GFF553at 614.921 kb on + strand, within GFF553at 614.922 kb on - strand, within GFF553at 614.922 kb on - strand, within GFF553at 615.008 kb on + strand, within GFF553at 615.009 kb on - strand, within GFF553at 615.540 kb on - strand, within GFF553at 615.540 kb on - strand, within GFF553at 615.579 kb on + strand, within GFF553at 615.580 kb on - strand, within GFF553at 615.598 kb on - strand, within GFF553

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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613,208 - GFF551 0.24 -1.1
613,279 + GFF551 0.30 -0.0
613,279 + GFF551 0.30 -0.2
613,279 + GFF551 0.30 -0.6
613,279 + GFF551 0.30 -0.7
613,280 - GFF551 0.30 +0.5
613,280 - GFF551 0.30 -0.9
613,280 - GFF551 0.30 -0.4
613,280 - GFF551 0.30 +0.4
613,293 + GFF551 0.31 +0.6
613,294 - GFF551 0.32 -0.4
613,321 + GFF551 0.34 -0.3
613,322 - GFF551 0.34 +0.3
613,384 + GFF551 0.40 +0.6
613,384 + GFF551 0.40 -0.2
613,384 + GFF551 0.40 -1.6
613,385 - GFF551 0.40 -0.1
613,437 + GFF551 0.44 -0.5
613,437 + GFF551 0.44 -0.5
613,437 + GFF551 0.44 +1.0
613,438 - GFF551 0.44 -1.2
613,441 + GFF551 0.45 +0.8
613,442 - GFF551 0.45 -0.2
613,442 - GFF551 0.45 -1.1
613,546 + GFF551 0.54 +0.2
613,549 + GFF551 0.54 -0.9
613,549 + GFF551 0.54 +0.1
613,549 + GFF551 0.54 -0.2
613,549 + GFF551 0.54 -1.0
613,550 - GFF551 0.54 -1.3
613,550 - GFF551 0.54 -0.4
613,550 - GFF551 0.54 -0.3
613,550 - GFF551 0.54 -2.6
613,550 - GFF551 0.54 -0.0
613,563 + GFF551 0.55 +0.2
613,564 - GFF551 0.55 -1.2
613,594 + GFF551 0.58 -0.2
613,726 - GFF551 0.70 +0.1
613,729 + GFF551 0.70 -0.2
613,730 - GFF551 0.70 +0.4
613,798 + GFF551 0.76 +1.3
613,799 - GFF551 0.76 -1.5
613,799 - GFF551 0.76 -0.5
613,799 - GFF551 0.76 -1.4
613,851 + GFF551 0.81 -1.0
613,887 + GFF551 0.84 -0.4
613,887 + GFF551 0.84 -1.4
613,985 + +0.1
613,986 - +0.4
614,026 + -0.2
614,026 + -0.1
614,026 + -0.2
614,027 - -0.2
614,027 - -0.3
614,027 - +0.7
614,059 + -0.1
614,059 + +0.3
614,060 - -0.7
614,169 + GFF552 0.15 +0.5
614,170 - GFF552 0.15 +0.9
614,211 + GFF552 0.22 -0.0
614,211 + GFF552 0.22 -1.9
614,211 + GFF552 0.22 -0.2
614,211 + GFF552 0.22 +0.0
614,211 + GFF552 0.22 -1.5
614,211 + GFF552 0.22 +0.9
614,212 - GFF552 0.22 -0.6
614,212 - GFF552 0.22 +0.2
614,217 + GFF552 0.23 +0.9
614,217 + GFF552 0.23 +0.0
614,218 - GFF552 0.23 +0.1
614,218 - GFF552 0.23 -0.3
614,218 - GFF552 0.23 +0.2
614,259 + GFF552 0.29 +0.3
614,259 + GFF552 0.29 -0.3
614,260 - GFF552 0.30 +1.5
614,260 - GFF552 0.30 +0.5
614,260 - GFF552 0.30 -0.5
614,260 - GFF552 0.30 +0.8
614,481 + GFF552 0.65 +1.8
614,566 - GFF552 0.78 -2.3
614,683 - +0.4
614,683 - -1.3
614,921 + GFF553 0.12 -0.9
614,921 + GFF553 0.12 -0.8
614,921 + GFF553 0.12 -0.5
614,922 - GFF553 0.13 -0.9
614,922 - GFF553 0.13 +0.4
615,008 + GFF553 0.22 -1.0
615,009 - GFF553 0.22 -0.7
615,540 - GFF553 0.79 +0.4
615,540 - GFF553 0.79 -0.3
615,579 + GFF553 0.83 +0.6
615,580 - GFF553 0.83 -0.9
615,598 - GFF553 0.85 +1.2

Or see this region's nucleotide sequence