Strain Fitness in Pseudomonas sp. DMC3 around GFF545

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF544 and GFF545 overlap by 4 nucleotidesGFF545 and GFF546 are separated by 3 nucleotides GFF544 - GDP-6-deoxy-D-mannose reductase, at 605,079 to 605,993 GFF544 GFF545 - GDP-mannose 4,6-dehydratase, at 605,990 to 606,961 GFF545 GFF546 - Alginate biosynthesis protein AlgA, at 606,965 to 608,407 GFF546 Position (kb) 605 606 607Strain fitness (log2 ratio) -2 -1 0 1 2at 605.190 kb on + strand, within GFF544at 605.190 kb on + strand, within GFF544at 605.198 kb on + strand, within GFF544at 605.382 kb on + strand, within GFF544at 605.382 kb on + strand, within GFF544at 605.383 kb on - strand, within GFF544at 605.673 kb on - strand, within GFF544at 605.712 kb on + strand, within GFF544at 605.712 kb on + strand, within GFF544at 605.712 kb on + strand, within GFF544at 605.713 kb on - strand, within GFF544at 605.713 kb on - strand, within GFF544at 605.751 kb on + strand, within GFF544at 605.751 kb on + strand, within GFF544at 605.751 kb on + strand, within GFF544at 605.752 kb on - strand, within GFF544at 605.752 kb on - strand, within GFF544at 605.827 kb on + strand, within GFF544at 605.828 kb on - strand, within GFF544at 606.038 kb on + strandat 606.038 kb on + strandat 606.038 kb on + strandat 606.039 kb on - strandat 606.069 kb on - strandat 606.186 kb on + strand, within GFF545at 606.187 kb on - strand, within GFF545at 606.224 kb on + strand, within GFF545at 606.224 kb on + strand, within GFF545at 606.224 kb on + strand, within GFF545at 606.224 kb on + strand, within GFF545at 606.224 kb on + strand, within GFF545at 606.225 kb on - strand, within GFF545at 606.225 kb on - strand, within GFF545at 606.225 kb on - strand, within GFF545at 606.225 kb on - strand, within GFF545at 606.225 kb on - strand, within GFF545at 606.225 kb on - strand, within GFF545at 606.225 kb on - strand, within GFF545at 606.455 kb on + strand, within GFF545at 606.455 kb on + strand, within GFF545at 606.455 kb on + strand, within GFF545at 606.665 kb on + strand, within GFF545at 606.666 kb on - strand, within GFF545at 606.784 kb on + strand, within GFF545at 606.785 kb on - strand, within GFF545at 606.788 kb on + strand, within GFF545at 606.788 kb on + strand, within GFF545at 606.797 kb on + strand, within GFF545at 606.797 kb on + strand, within GFF545at 606.876 kb on + strandat 606.877 kb on - strandat 606.907 kb on + strandat 606.959 kb on + strandat 606.959 kb on + strandat 606.959 kb on + strandat 607.085 kb on + strandat 607.085 kb on + strandat 607.086 kb on - strandat 607.086 kb on - strandat 607.086 kb on - strandat 607.086 kb on - strandat 607.086 kb on - strandat 607.148 kb on + strand, within GFF546at 607.151 kb on + strand, within GFF546at 607.151 kb on + strand, within GFF546at 607.152 kb on - strand, within GFF546at 607.152 kb on - strand, within GFF546at 607.173 kb on - strand, within GFF546at 607.389 kb on - strand, within GFF546at 607.439 kb on + strand, within GFF546at 607.439 kb on + strand, within GFF546at 607.440 kb on - strand, within GFF546at 607.440 kb on - strand, within GFF546at 607.529 kb on + strand, within GFF546at 607.530 kb on - strand, within GFF546at 607.740 kb on - strand, within GFF546at 607.776 kb on + strand, within GFF546at 607.776 kb on + strand, within GFF546at 607.776 kb on + strand, within GFF546at 607.777 kb on - strand, within GFF546at 607.777 kb on - strand, within GFF546

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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605,190 + GFF544 0.12 +2.1
605,190 + GFF544 0.12 -0.8
605,198 + GFF544 0.13 -1.3
605,382 + GFF544 0.33 +0.2
605,382 + GFF544 0.33 +0.5
605,383 - GFF544 0.33 -0.0
605,673 - GFF544 0.65 -0.3
605,712 + GFF544 0.69 -1.0
605,712 + GFF544 0.69 -0.9
605,712 + GFF544 0.69 -2.2
605,713 - GFF544 0.69 +0.6
605,713 - GFF544 0.69 -2.0
605,751 + GFF544 0.73 +0.6
605,751 + GFF544 0.73 +1.9
605,751 + GFF544 0.73 +0.2
605,752 - GFF544 0.74 +0.3
605,752 - GFF544 0.74 -0.0
605,827 + GFF544 0.82 -0.2
605,828 - GFF544 0.82 -0.3
606,038 + +0.2
606,038 + -1.5
606,038 + -0.9
606,039 - +0.2
606,069 - -0.2
606,186 + GFF545 0.20 -0.5
606,187 - GFF545 0.20 -1.4
606,224 + GFF545 0.24 -0.3
606,224 + GFF545 0.24 -0.4
606,224 + GFF545 0.24 +0.2
606,224 + GFF545 0.24 -0.4
606,224 + GFF545 0.24 +0.9
606,225 - GFF545 0.24 +0.8
606,225 - GFF545 0.24 -1.0
606,225 - GFF545 0.24 +0.5
606,225 - GFF545 0.24 -0.5
606,225 - GFF545 0.24 +0.0
606,225 - GFF545 0.24 +1.0
606,225 - GFF545 0.24 +0.5
606,455 + GFF545 0.48 +0.0
606,455 + GFF545 0.48 -1.6
606,455 + GFF545 0.48 -0.2
606,665 + GFF545 0.69 -1.1
606,666 - GFF545 0.70 -0.9
606,784 + GFF545 0.82 -0.3
606,785 - GFF545 0.82 -0.8
606,788 + GFF545 0.82 +2.1
606,788 + GFF545 0.82 +0.7
606,797 + GFF545 0.83 -0.4
606,797 + GFF545 0.83 -2.0
606,876 + +0.1
606,877 - -0.3
606,907 + +0.6
606,959 + +0.7
606,959 + +0.7
606,959 + -0.3
607,085 + -0.3
607,085 + +1.4
607,086 - -0.5
607,086 - -0.8
607,086 - +0.2
607,086 - +0.5
607,086 - +0.8
607,148 + GFF546 0.13 +0.7
607,151 + GFF546 0.13 -1.7
607,151 + GFF546 0.13 +0.7
607,152 - GFF546 0.13 +0.6
607,152 - GFF546 0.13 -0.3
607,173 - GFF546 0.14 +0.8
607,389 - GFF546 0.29 +0.2
607,439 + GFF546 0.33 -0.5
607,439 + GFF546 0.33 +0.1
607,440 - GFF546 0.33 -0.4
607,440 - GFF546 0.33 -0.0
607,529 + GFF546 0.39 +2.2
607,530 - GFF546 0.39 +0.2
607,740 - GFF546 0.54 -0.2
607,776 + GFF546 0.56 +0.9
607,776 + GFF546 0.56 -0.8
607,776 + GFF546 0.56 -0.6
607,777 - GFF546 0.56 -0.6
607,777 - GFF546 0.56 -0.2

Or see this region's nucleotide sequence