Strain Fitness in Pseudomonas sp. DMC3 around GFF530

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF529 and GFF530 are separated by 10 nucleotidesGFF530 and GFF531 are separated by 177 nucleotides GFF529 - Major cardiolipin synthase ClsA, at 584,713 to 586,152 GFF529 GFF530 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 586,163 to 587,350 GFF530 GFF531 - Zinc-transporting ATPase, at 587,528 to 589,438 GFF531 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1 2at 585.233 kb on + strand, within GFF529at 585.234 kb on - strand, within GFF529at 585.250 kb on + strand, within GFF529at 585.286 kb on + strand, within GFF529at 585.286 kb on + strand, within GFF529at 585.287 kb on - strand, within GFF529at 585.287 kb on - strand, within GFF529at 585.287 kb on - strand, within GFF529at 585.407 kb on + strand, within GFF529at 585.408 kb on - strand, within GFF529at 585.430 kb on - strand, within GFF529at 585.430 kb on - strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.445 kb on + strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.446 kb on - strand, within GFF529at 585.562 kb on - strand, within GFF529at 585.588 kb on + strand, within GFF529at 585.589 kb on - strand, within GFF529at 585.592 kb on + strand, within GFF529at 585.592 kb on + strand, within GFF529at 585.593 kb on - strand, within GFF529at 585.593 kb on - strand, within GFF529at 585.593 kb on - strand, within GFF529at 585.646 kb on + strand, within GFF529at 585.646 kb on + strand, within GFF529at 585.647 kb on - strand, within GFF529at 585.647 kb on - strand, within GFF529at 585.718 kb on + strand, within GFF529at 585.718 kb on + strand, within GFF529at 585.718 kb on + strand, within GFF529at 585.718 kb on + strand, within GFF529at 585.719 kb on - strand, within GFF529at 585.719 kb on - strand, within GFF529at 585.740 kb on + strand, within GFF529at 585.740 kb on + strand, within GFF529at 585.741 kb on - strand, within GFF529at 585.841 kb on + strand, within GFF529at 585.841 kb on + strand, within GFF529at 585.841 kb on + strand, within GFF529at 585.841 kb on + strand, within GFF529at 585.842 kb on - strand, within GFF529at 585.842 kb on - strand, within GFF529at 585.842 kb on - strand, within GFF529at 585.842 kb on - strand, within GFF529at 585.911 kb on + strand, within GFF529at 585.911 kb on + strand, within GFF529at 585.960 kb on + strand, within GFF529at 586.173 kb on + strandat 586.173 kb on + strandat 586.173 kb on + strandat 586.173 kb on + strandat 586.173 kb on + strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.174 kb on - strandat 586.272 kb on + strandat 586.272 kb on + strandat 586.272 kb on + strandat 586.272 kb on + strandat 586.272 kb on + strandat 586.272 kb on + strandat 586.290 kb on + strand, within GFF530at 586.290 kb on + strand, within GFF530at 586.290 kb on + strand, within GFF530at 586.290 kb on + strand, within GFF530at 586.291 kb on - strand, within GFF530at 586.303 kb on + strand, within GFF530at 586.304 kb on - strand, within GFF530at 586.304 kb on - strand, within GFF530at 586.304 kb on - strand, within GFF530at 586.348 kb on + strand, within GFF530at 586.492 kb on - strand, within GFF530at 586.492 kb on - strand, within GFF530at 586.571 kb on + strand, within GFF530at 586.612 kb on - strand, within GFF530at 586.786 kb on + strand, within GFF530at 586.786 kb on + strand, within GFF530at 586.786 kb on + strand, within GFF530at 586.787 kb on - strand, within GFF530at 586.787 kb on - strand, within GFF530at 586.787 kb on - strand, within GFF530at 586.787 kb on - strand, within GFF530at 586.789 kb on + strand, within GFF530at 586.802 kb on + strand, within GFF530at 586.802 kb on + strand, within GFF530at 586.803 kb on - strand, within GFF530at 586.866 kb on + strand, within GFF530at 586.866 kb on + strand, within GFF530at 586.866 kb on + strand, within GFF530at 586.866 kb on + strand, within GFF530at 586.956 kb on + strand, within GFF530at 586.956 kb on + strand, within GFF530at 586.956 kb on + strand, within GFF530at 586.968 kb on + strand, within GFF530at 586.968 kb on + strand, within GFF530at 586.969 kb on - strand, within GFF530at 586.969 kb on - strand, within GFF530at 586.999 kb on - strand, within GFF530at 586.999 kb on - strand, within GFF530at 586.999 kb on - strand, within GFF530at 587.019 kb on + strand, within GFF530at 587.019 kb on + strand, within GFF530at 587.019 kb on + strand, within GFF530at 587.020 kb on - strand, within GFF530at 587.020 kb on - strand, within GFF530at 587.020 kb on - strand, within GFF530at 587.020 kb on - strand, within GFF530at 587.218 kb on + strand, within GFF530at 587.218 kb on + strand, within GFF530at 587.324 kb on + strandat 587.324 kb on + strandat 587.324 kb on + strandat 587.482 kb on - strandat 587.533 kb on + strandat 587.609 kb on - strandat 587.728 kb on + strand, within GFF531at 587.729 kb on - strand, within GFF531at 587.761 kb on + strand, within GFF531at 587.762 kb on - strand, within GFF531at 587.762 kb on - strand, within GFF531at 587.894 kb on + strand, within GFF531at 587.895 kb on - strand, within GFF531at 587.897 kb on + strand, within GFF531at 587.897 kb on + strand, within GFF531at 587.897 kb on + strand, within GFF531at 587.897 kb on + strand, within GFF531at 587.898 kb on - strand, within GFF531at 587.898 kb on - strand, within GFF531at 587.898 kb on - strand, within GFF531at 587.898 kb on - strand, within GFF531at 587.898 kb on - strand, within GFF531at 587.898 kb on - strand, within GFF531at 587.898 kb on - strand, within GFF531at 588.114 kb on - strand, within GFF531at 588.139 kb on + strand, within GFF531at 588.300 kb on + strand, within GFF531at 588.300 kb on + strand, within GFF531at 588.300 kb on + strand, within GFF531at 588.301 kb on - strand, within GFF531at 588.301 kb on - strand, within GFF531at 588.301 kb on - strand, within GFF531

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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585,233 + GFF529 0.36 -0.5
585,234 - GFF529 0.36 -0.7
585,250 + GFF529 0.37 +0.5
585,286 + GFF529 0.40 +0.4
585,286 + GFF529 0.40 +0.5
585,287 - GFF529 0.40 +0.8
585,287 - GFF529 0.40 +1.6
585,287 - GFF529 0.40 +0.6
585,407 + GFF529 0.48 -0.3
585,408 - GFF529 0.48 -0.4
585,430 - GFF529 0.50 +1.0
585,430 - GFF529 0.50 -0.2
585,445 + GFF529 0.51 +0.9
585,445 + GFF529 0.51 -0.3
585,445 + GFF529 0.51 -0.7
585,445 + GFF529 0.51 +0.1
585,445 + GFF529 0.51 -1.4
585,445 + GFF529 0.51 -0.5
585,445 + GFF529 0.51 +0.7
585,445 + GFF529 0.51 -0.6
585,445 + GFF529 0.51 +0.6
585,445 + GFF529 0.51 -0.7
585,446 - GFF529 0.51 +1.1
585,446 - GFF529 0.51 -0.0
585,446 - GFF529 0.51 -1.0
585,446 - GFF529 0.51 -0.4
585,446 - GFF529 0.51 +0.5
585,446 - GFF529 0.51 -1.2
585,446 - GFF529 0.51 -2.6
585,446 - GFF529 0.51 -1.1
585,446 - GFF529 0.51 -0.1
585,446 - GFF529 0.51 +0.6
585,446 - GFF529 0.51 +0.5
585,562 - GFF529 0.59 +0.1
585,588 + GFF529 0.61 +1.8
585,589 - GFF529 0.61 -0.2
585,592 + GFF529 0.61 +1.1
585,592 + GFF529 0.61 -0.0
585,593 - GFF529 0.61 +0.8
585,593 - GFF529 0.61 +0.2
585,593 - GFF529 0.61 -0.2
585,646 + GFF529 0.65 +0.1
585,646 + GFF529 0.65 +0.1
585,647 - GFF529 0.65 -0.4
585,647 - GFF529 0.65 +1.0
585,718 + GFF529 0.70 -1.3
585,718 + GFF529 0.70 +1.8
585,718 + GFF529 0.70 -0.8
585,718 + GFF529 0.70 -1.0
585,719 - GFF529 0.70 -0.2
585,719 - GFF529 0.70 +0.5
585,740 + GFF529 0.71 -0.2
585,740 + GFF529 0.71 +0.4
585,741 - GFF529 0.71 +0.1
585,841 + GFF529 0.78 -0.3
585,841 + GFF529 0.78 -0.2
585,841 + GFF529 0.78 +2.1
585,841 + GFF529 0.78 +0.8
585,842 - GFF529 0.78 -0.2
585,842 - GFF529 0.78 +0.2
585,842 - GFF529 0.78 -1.3
585,842 - GFF529 0.78 -0.3
585,911 + GFF529 0.83 +0.8
585,911 + GFF529 0.83 -0.6
585,960 + GFF529 0.87 -0.1
586,173 + -0.3
586,173 + +0.1
586,173 + -0.3
586,173 + +1.2
586,173 + +1.2
586,174 - +0.6
586,174 - +0.4
586,174 - -1.0
586,174 - -0.2
586,174 - +0.8
586,174 - +0.1
586,174 - +0.4
586,174 - +0.0
586,174 - +0.3
586,174 - -1.1
586,272 + -1.0
586,272 + -0.9
586,272 + +0.6
586,272 + -0.2
586,272 + -0.2
586,272 + -0.0
586,290 + GFF530 0.11 -0.5
586,290 + GFF530 0.11 -0.5
586,290 + GFF530 0.11 +1.1
586,290 + GFF530 0.11 +1.0
586,291 - GFF530 0.11 +0.1
586,303 + GFF530 0.12 +0.2
586,304 - GFF530 0.12 -0.3
586,304 - GFF530 0.12 -0.2
586,304 - GFF530 0.12 -0.2
586,348 + GFF530 0.16 +0.7
586,492 - GFF530 0.28 +0.2
586,492 - GFF530 0.28 +1.6
586,571 + GFF530 0.34 +1.1
586,612 - GFF530 0.38 -1.3
586,786 + GFF530 0.52 -1.3
586,786 + GFF530 0.52 -0.6
586,786 + GFF530 0.52 +0.2
586,787 - GFF530 0.53 -1.1
586,787 - GFF530 0.53 -0.6
586,787 - GFF530 0.53 +1.1
586,787 - GFF530 0.53 +0.0
586,789 + GFF530 0.53 +0.7
586,802 + GFF530 0.54 -0.4
586,802 + GFF530 0.54 +0.7
586,803 - GFF530 0.54 -0.3
586,866 + GFF530 0.59 -0.9
586,866 + GFF530 0.59 -1.0
586,866 + GFF530 0.59 +0.1
586,866 + GFF530 0.59 -0.2
586,956 + GFF530 0.67 -0.1
586,956 + GFF530 0.67 -1.3
586,956 + GFF530 0.67 -0.3
586,968 + GFF530 0.68 +0.8
586,968 + GFF530 0.68 -0.3
586,969 - GFF530 0.68 -1.7
586,969 - GFF530 0.68 +1.1
586,999 - GFF530 0.70 +0.5
586,999 - GFF530 0.70 -0.4
586,999 - GFF530 0.70 -0.9
587,019 + GFF530 0.72 +0.4
587,019 + GFF530 0.72 -1.5
587,019 + GFF530 0.72 -0.5
587,020 - GFF530 0.72 -0.2
587,020 - GFF530 0.72 +1.2
587,020 - GFF530 0.72 +0.2
587,020 - GFF530 0.72 +0.2
587,218 + GFF530 0.89 +0.8
587,218 + GFF530 0.89 -0.0
587,324 + +0.2
587,324 + -0.3
587,324 + -0.0
587,482 - +0.3
587,533 + +0.2
587,609 - -0.3
587,728 + GFF531 0.10 +0.7
587,729 - GFF531 0.11 +0.5
587,761 + GFF531 0.12 +1.0
587,762 - GFF531 0.12 -0.4
587,762 - GFF531 0.12 +1.4
587,894 + GFF531 0.19 +0.1
587,895 - GFF531 0.19 -0.3
587,897 + GFF531 0.19 -1.4
587,897 + GFF531 0.19 -0.7
587,897 + GFF531 0.19 -0.1
587,897 + GFF531 0.19 +1.8
587,898 - GFF531 0.19 -0.4
587,898 - GFF531 0.19 +1.5
587,898 - GFF531 0.19 -0.4
587,898 - GFF531 0.19 -0.9
587,898 - GFF531 0.19 +0.2
587,898 - GFF531 0.19 +1.0
587,898 - GFF531 0.19 -0.6
588,114 - GFF531 0.31 -0.2
588,139 + GFF531 0.32 +0.3
588,300 + GFF531 0.40 +0.2
588,300 + GFF531 0.40 +0.5
588,300 + GFF531 0.40 -0.2
588,301 - GFF531 0.40 -0.0
588,301 - GFF531 0.40 -0.2
588,301 - GFF531 0.40 -0.4

Or see this region's nucleotide sequence