Strain Fitness in Pseudomonas sp. DMC3 around GFF5104

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5103 and GFF5104 are separated by 120 nucleotidesGFF5104 and GFF5105 are separated by 99 nucleotidesGFF5105 and GFF5106 are separated by 350 nucleotides GFF5103 - Vitamin B12 import ATP-binding protein BtuD, at 89,496 to 90,605 GFF5103 GFF5104 - Trans-2,3-dihydro-3-hydroxyanthranilate isomerase, at 90,726 to 91,508 GFF5104 GFF5105 - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK, at 91,608 to 92,078 GFF5105 GFF5106 - Glycerol uptake facilitator protein, at 92,429 to 93,280 GFF5106 Position (kb) 90 91 92Strain fitness (log2 ratio) -3 -2 -1 0 1at 89.766 kb on + strand, within GFF5103at 89.766 kb on + strand, within GFF5103at 89.767 kb on - strand, within GFF5103at 89.767 kb on - strand, within GFF5103at 89.767 kb on - strand, within GFF5103at 89.767 kb on - strand, within GFF5103at 90.122 kb on - strand, within GFF5103at 90.159 kb on + strand, within GFF5103at 90.159 kb on + strand, within GFF5103at 90.159 kb on + strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.160 kb on - strand, within GFF5103at 90.168 kb on + strand, within GFF5103at 90.169 kb on - strand, within GFF5103at 90.189 kb on + strand, within GFF5103at 90.189 kb on + strand, within GFF5103at 90.189 kb on + strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.190 kb on - strand, within GFF5103at 90.291 kb on + strand, within GFF5103at 90.291 kb on + strand, within GFF5103at 90.292 kb on - strand, within GFF5103at 90.292 kb on - strand, within GFF5103at 90.349 kb on - strand, within GFF5103at 90.359 kb on + strand, within GFF5103at 90.360 kb on - strand, within GFF5103at 90.414 kb on + strand, within GFF5103at 90.414 kb on + strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.415 kb on - strand, within GFF5103at 90.603 kb on + strandat 90.604 kb on - strandat 90.720 kb on - strandat 90.733 kb on - strandat 90.924 kb on - strand, within GFF5104at 91.335 kb on - strand, within GFF5104at 91.438 kb on + strandat 91.438 kb on + strandat 91.439 kb on - strandat 91.591 kb on + strandat 91.592 kb on - strandat 91.592 kb on - strandat 91.592 kb on - strandat 91.592 kb on - strandat 91.606 kb on + strandat 91.606 kb on + strandat 91.607 kb on - strandat 91.610 kb on - strandat 91.610 kb on - strandat 91.610 kb on - strandat 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.705 kb on + strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.706 kb on - strand, within GFF5105at 91.709 kb on + strand, within GFF5105at 91.709 kb on + strand, within GFF5105at 91.709 kb on + strand, within GFF5105at 91.709 kb on + strand, within GFF5105at 91.709 kb on + strand, within GFF5105at 91.709 kb on + strand, within GFF5105at 91.709 kb on + strand, within GFF5105at 91.710 kb on - strand, within GFF5105at 91.710 kb on - strand, within GFF5105at 91.710 kb on - strand, within GFF5105at 91.868 kb on + strand, within GFF5105at 92.020 kb on + strand, within GFF5105at 92.021 kb on - strand, within GFF5105at 92.021 kb on - strand, within GFF5105at 92.124 kb on + strandat 92.124 kb on + strandat 92.149 kb on + strandat 92.229 kb on + strandat 92.280 kb on - strandat 92.281 kb on + strandat 92.300 kb on - strandat 92.304 kb on + strandat 92.304 kb on + strandat 92.304 kb on + strandat 92.304 kb on + strandat 92.304 kb on + strandat 92.304 kb on + strandat 92.402 kb on - strandat 92.402 kb on - strandat 92.402 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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89,766 + GFF5103 0.24 +0.4
89,766 + GFF5103 0.24 +0.7
89,767 - GFF5103 0.24 -1.3
89,767 - GFF5103 0.24 +0.6
89,767 - GFF5103 0.24 -0.9
89,767 - GFF5103 0.24 +0.7
90,122 - GFF5103 0.56 +0.4
90,159 + GFF5103 0.60 -0.8
90,159 + GFF5103 0.60 -1.3
90,159 + GFF5103 0.60 -0.8
90,160 - GFF5103 0.60 +0.4
90,160 - GFF5103 0.60 -2.4
90,160 - GFF5103 0.60 +0.5
90,160 - GFF5103 0.60 +1.0
90,160 - GFF5103 0.60 +1.4
90,168 + GFF5103 0.61 -0.7
90,169 - GFF5103 0.61 +0.4
90,189 + GFF5103 0.62 +0.5
90,189 + GFF5103 0.62 -0.9
90,189 + GFF5103 0.62 -1.3
90,190 - GFF5103 0.63 -1.1
90,190 - GFF5103 0.63 +1.0
90,190 - GFF5103 0.63 -0.4
90,190 - GFF5103 0.63 +0.0
90,190 - GFF5103 0.63 -2.6
90,190 - GFF5103 0.63 -0.8
90,190 - GFF5103 0.63 -0.6
90,190 - GFF5103 0.63 +0.2
90,291 + GFF5103 0.72 +0.8
90,291 + GFF5103 0.72 -0.0
90,292 - GFF5103 0.72 -0.2
90,292 - GFF5103 0.72 +1.1
90,349 - GFF5103 0.77 -0.4
90,359 + GFF5103 0.78 -0.1
90,360 - GFF5103 0.78 +0.9
90,414 + GFF5103 0.83 +0.1
90,414 + GFF5103 0.83 -1.2
90,415 - GFF5103 0.83 -0.2
90,415 - GFF5103 0.83 -1.1
90,415 - GFF5103 0.83 +0.2
90,415 - GFF5103 0.83 -0.5
90,415 - GFF5103 0.83 -0.1
90,415 - GFF5103 0.83 -0.5
90,415 - GFF5103 0.83 +0.1
90,603 + -1.3
90,604 - -0.5
90,720 - +0.3
90,733 - +0.7
90,924 - GFF5104 0.25 -1.5
91,335 - GFF5104 0.78 -0.1
91,438 + +0.4
91,438 + -1.0
91,439 - -0.1
91,591 + +0.1
91,592 - -1.0
91,592 - +0.9
91,592 - -0.1
91,592 - -0.4
91,606 + +0.7
91,606 + -0.3
91,607 - +0.3
91,610 - -0.8
91,610 - -0.8
91,610 - -0.8
91,705 + GFF5105 0.21 -0.1
91,705 + GFF5105 0.21 +1.1
91,705 + GFF5105 0.21 -0.4
91,705 + GFF5105 0.21 +0.7
91,705 + GFF5105 0.21 -0.4
91,705 + GFF5105 0.21 -0.2
91,705 + GFF5105 0.21 -1.7
91,705 + GFF5105 0.21 +0.0
91,705 + GFF5105 0.21 -0.5
91,705 + GFF5105 0.21 +0.5
91,705 + GFF5105 0.21 -1.0
91,705 + GFF5105 0.21 +0.2
91,705 + GFF5105 0.21 +1.1
91,705 + GFF5105 0.21 +0.1
91,705 + GFF5105 0.21 +0.4
91,706 - GFF5105 0.21 -0.6
91,706 - GFF5105 0.21 +0.6
91,706 - GFF5105 0.21 -0.4
91,706 - GFF5105 0.21 -0.4
91,706 - GFF5105 0.21 +0.5
91,706 - GFF5105 0.21 -0.3
91,706 - GFF5105 0.21 -1.0
91,706 - GFF5105 0.21 -0.9
91,706 - GFF5105 0.21 -0.5
91,706 - GFF5105 0.21 +0.5
91,706 - GFF5105 0.21 -0.2
91,706 - GFF5105 0.21 +1.2
91,706 - GFF5105 0.21 +0.6
91,706 - GFF5105 0.21 -2.4
91,706 - GFF5105 0.21 -1.3
91,706 - GFF5105 0.21 +0.5
91,706 - GFF5105 0.21 -0.2
91,706 - GFF5105 0.21 +1.5
91,709 + GFF5105 0.21 -0.4
91,709 + GFF5105 0.21 +0.9
91,709 + GFF5105 0.21 -0.1
91,709 + GFF5105 0.21 +0.1
91,709 + GFF5105 0.21 -1.6
91,709 + GFF5105 0.21 +0.1
91,709 + GFF5105 0.21 -1.5
91,710 - GFF5105 0.22 +0.5
91,710 - GFF5105 0.22 -0.4
91,710 - GFF5105 0.22 -1.8
91,868 + GFF5105 0.55 +0.7
92,020 + GFF5105 0.87 -0.2
92,021 - GFF5105 0.88 -0.3
92,021 - GFF5105 0.88 -0.2
92,124 + +0.4
92,124 + +0.3
92,149 + -0.3
92,229 + +0.0
92,280 - +0.3
92,281 + +1.3
92,300 - -0.5
92,304 + -0.7
92,304 + -0.3
92,304 + +0.3
92,304 + -0.3
92,304 + +0.3
92,304 + -0.1
92,402 - -1.0
92,402 - -3.0
92,402 - -0.5

Or see this region's nucleotide sequence