Strain Fitness in Pseudomonas sp. DMC3 around GFF4898

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4896 and GFF4897 are separated by 112 nucleotidesGFF4897 and GFF4898 are separated by 93 nucleotidesGFF4898 and GFF4899 are separated by 37 nucleotides GFF4896 - hypothetical protein, at 179,368 to 180,183 GFF4896 GFF4897 - HTH-type transcriptional regulator NimR, at 180,296 to 181,063 GFF4897 GFF4898 - hypothetical protein, at 181,157 to 181,474 GFF4898 GFF4899 - putative protein, at 181,512 to 182,567 GFF4899 Position (kb) 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 180.165 kb on + strandat 180.165 kb on + strandat 180.166 kb on - strandat 180.166 kb on - strandat 180.166 kb on - strandat 180.176 kb on + strandat 180.176 kb on + strandat 180.176 kb on + strandat 180.176 kb on + strandat 180.176 kb on + strandat 180.177 kb on - strandat 180.177 kb on - strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.218 kb on + strandat 180.219 kb on - strandat 180.219 kb on - strandat 180.219 kb on - strandat 180.219 kb on - strandat 180.219 kb on - strandat 180.219 kb on - strandat 180.219 kb on - strandat 180.258 kb on + strandat 180.378 kb on + strand, within GFF4897at 180.378 kb on + strand, within GFF4897at 180.379 kb on - strand, within GFF4897at 180.379 kb on - strand, within GFF4897at 180.417 kb on - strand, within GFF4897at 180.417 kb on - strand, within GFF4897at 180.457 kb on + strand, within GFF4897at 180.457 kb on + strand, within GFF4897at 180.548 kb on + strand, within GFF4897at 180.548 kb on + strand, within GFF4897at 180.548 kb on + strand, within GFF4897at 180.548 kb on + strand, within GFF4897at 180.548 kb on + strand, within GFF4897at 180.548 kb on + strand, within GFF4897at 180.548 kb on + strand, within GFF4897at 180.549 kb on - strand, within GFF4897at 180.549 kb on - strand, within GFF4897at 180.549 kb on - strand, within GFF4897at 180.549 kb on - strand, within GFF4897at 180.549 kb on - strand, within GFF4897at 180.653 kb on + strand, within GFF4897at 180.653 kb on + strand, within GFF4897at 180.653 kb on + strand, within GFF4897at 180.653 kb on + strand, within GFF4897at 180.653 kb on + strand, within GFF4897at 180.653 kb on + strand, within GFF4897at 180.654 kb on - strand, within GFF4897at 180.654 kb on - strand, within GFF4897at 180.831 kb on + strand, within GFF4897at 180.831 kb on + strand, within GFF4897at 180.832 kb on - strand, within GFF4897at 180.832 kb on - strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.837 kb on + strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.838 kb on - strand, within GFF4897at 180.847 kb on + strand, within GFF4897at 180.847 kb on + strand, within GFF4897at 180.848 kb on - strand, within GFF4897at 180.848 kb on - strand, within GFF4897at 180.848 kb on - strand, within GFF4897at 180.848 kb on - strand, within GFF4897at 180.853 kb on + strand, within GFF4897at 180.854 kb on - strand, within GFF4897at 181.062 kb on - strandat 181.119 kb on + strandat 181.297 kb on + strand, within GFF4898at 181.427 kb on - strand, within GFF4898at 181.472 kb on + strandat 181.473 kb on - strandat 181.524 kb on + strandat 181.525 kb on - strandat 181.525 kb on - strandat 181.620 kb on - strand, within GFF4899at 181.628 kb on + strand, within GFF4899at 181.629 kb on - strand, within GFF4899at 181.629 kb on - strand, within GFF4899at 181.798 kb on + strand, within GFF4899at 181.798 kb on + strand, within GFF4899at 181.798 kb on + strand, within GFF4899at 181.798 kb on + strand, within GFF4899at 181.799 kb on - strand, within GFF4899at 181.837 kb on + strand, within GFF4899at 181.838 kb on - strand, within GFF4899at 181.838 kb on - strand, within GFF4899at 182.033 kb on - strand, within GFF4899at 182.104 kb on + strand, within GFF4899at 182.104 kb on + strand, within GFF4899at 182.130 kb on + strand, within GFF4899at 182.155 kb on + strand, within GFF4899

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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180,165 + -3.0
180,165 + -0.5
180,166 - +1.4
180,166 - -1.1
180,166 - +0.0
180,176 + +0.1
180,176 + +0.1
180,176 + +0.7
180,176 + -0.6
180,176 + +0.5
180,177 - +1.4
180,177 - +1.2
180,218 + +0.4
180,218 + -0.6
180,218 + -1.0
180,218 + -0.6
180,218 + -0.3
180,218 + -0.0
180,218 + +0.2
180,218 + -0.1
180,218 + +0.2
180,218 + +0.7
180,219 - -0.2
180,219 - -0.6
180,219 - -0.3
180,219 - +1.0
180,219 - -0.6
180,219 - +0.9
180,219 - -0.2
180,258 + -0.3
180,378 + GFF4897 0.11 -0.9
180,378 + GFF4897 0.11 +0.3
180,379 - GFF4897 0.11 -0.3
180,379 - GFF4897 0.11 -0.3
180,417 - GFF4897 0.16 -0.3
180,417 - GFF4897 0.16 -0.3
180,457 + GFF4897 0.21 -0.5
180,457 + GFF4897 0.21 -0.4
180,548 + GFF4897 0.33 -1.1
180,548 + GFF4897 0.33 +0.2
180,548 + GFF4897 0.33 -0.3
180,548 + GFF4897 0.33 -0.3
180,548 + GFF4897 0.33 -0.4
180,548 + GFF4897 0.33 -0.1
180,548 + GFF4897 0.33 +1.3
180,549 - GFF4897 0.33 +1.8
180,549 - GFF4897 0.33 +0.3
180,549 - GFF4897 0.33 -0.2
180,549 - GFF4897 0.33 +0.4
180,549 - GFF4897 0.33 +0.2
180,653 + GFF4897 0.46 -1.7
180,653 + GFF4897 0.46 +0.1
180,653 + GFF4897 0.46 +0.9
180,653 + GFF4897 0.46 -0.0
180,653 + GFF4897 0.46 +1.0
180,653 + GFF4897 0.46 +0.3
180,654 - GFF4897 0.47 +0.1
180,654 - GFF4897 0.47 -0.1
180,831 + GFF4897 0.70 +0.4
180,831 + GFF4897 0.70 -0.2
180,832 - GFF4897 0.70 -0.9
180,832 - GFF4897 0.70 -1.1
180,837 + GFF4897 0.70 -0.2
180,837 + GFF4897 0.70 -0.7
180,837 + GFF4897 0.70 -0.1
180,837 + GFF4897 0.70 -1.3
180,837 + GFF4897 0.70 -0.7
180,837 + GFF4897 0.70 -1.3
180,837 + GFF4897 0.70 +1.4
180,837 + GFF4897 0.70 -0.9
180,837 + GFF4897 0.70 -1.8
180,837 + GFF4897 0.70 +0.0
180,837 + GFF4897 0.70 -0.5
180,837 + GFF4897 0.70 +0.1
180,837 + GFF4897 0.70 +1.7
180,837 + GFF4897 0.70 -0.6
180,837 + GFF4897 0.70 -0.3
180,837 + GFF4897 0.70 +0.3
180,837 + GFF4897 0.70 -0.7
180,838 - GFF4897 0.71 -1.6
180,838 - GFF4897 0.71 +0.3
180,838 - GFF4897 0.71 +0.2
180,838 - GFF4897 0.71 +0.2
180,838 - GFF4897 0.71 +0.7
180,838 - GFF4897 0.71 +0.2
180,838 - GFF4897 0.71 -1.3
180,838 - GFF4897 0.71 -0.2
180,838 - GFF4897 0.71 -0.3
180,847 + GFF4897 0.72 +0.0
180,847 + GFF4897 0.72 +0.6
180,848 - GFF4897 0.72 -0.0
180,848 - GFF4897 0.72 -0.6
180,848 - GFF4897 0.72 -0.7
180,848 - GFF4897 0.72 -0.0
180,853 + GFF4897 0.73 -1.3
180,854 - GFF4897 0.73 -0.9
181,062 - -0.0
181,119 + -0.2
181,297 + GFF4898 0.44 +0.1
181,427 - GFF4898 0.85 -2.0
181,472 + +1.9
181,473 - -0.6
181,524 + +0.4
181,525 - +0.2
181,525 - -0.4
181,620 - GFF4899 0.10 +0.7
181,628 + GFF4899 0.11 -0.7
181,629 - GFF4899 0.11 +0.2
181,629 - GFF4899 0.11 -0.3
181,798 + GFF4899 0.27 +0.0
181,798 + GFF4899 0.27 +0.5
181,798 + GFF4899 0.27 -1.8
181,798 + GFF4899 0.27 -1.4
181,799 - GFF4899 0.27 -0.3
181,837 + GFF4899 0.31 -0.7
181,838 - GFF4899 0.31 +1.1
181,838 - GFF4899 0.31 +0.5
182,033 - GFF4899 0.49 +1.1
182,104 + GFF4899 0.56 +0.2
182,104 + GFF4899 0.56 +0.3
182,130 + GFF4899 0.59 +0.7
182,155 + GFF4899 0.61 +0.1

Or see this region's nucleotide sequence