Strain Fitness in Pseudomonas sp. DMC3 around GFF471

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF469 and GFF470 are separated by 151 nucleotidesGFF470 and GFF471 are separated by 69 nucleotidesGFF471 and GFF472 are separated by 123 nucleotides GFF469 - hypothetical protein, at 515,764 to 516,147 GFF469 GFF470 - Phosphate regulon transcriptional regulatory protein PhoB, at 516,299 to 516,988 GFF470 GFF471 - Phosphate regulon sensor protein PhoR, at 517,058 to 518,413 GFF471 GFF472 - hypothetical protein, at 518,537 to 519,877 GFF472 Position (kb) 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1at 516.183 kb on + strandat 516.190 kb on + strandat 516.226 kb on + strandat 516.227 kb on - strandat 516.227 kb on - strandat 516.246 kb on - strandat 516.246 kb on - strandat 516.258 kb on + strandat 516.258 kb on + strandat 516.258 kb on + strandat 516.258 kb on + strandat 516.258 kb on + strandat 516.258 kb on + strandat 516.258 kb on + strandat 516.259 kb on - strandat 516.259 kb on - strandat 516.259 kb on - strandat 516.259 kb on - strandat 516.277 kb on + strandat 516.277 kb on + strandat 516.277 kb on + strandat 516.278 kb on - strandat 516.278 kb on - strandat 516.293 kb on + strandat 516.293 kb on + strandat 516.293 kb on + strandat 516.293 kb on + strandat 516.380 kb on + strand, within GFF470at 516.605 kb on + strand, within GFF470at 516.605 kb on + strand, within GFF470at 516.605 kb on + strand, within GFF470at 516.605 kb on + strand, within GFF470at 516.605 kb on + strand, within GFF470at 516.606 kb on - strand, within GFF470at 516.606 kb on - strand, within GFF470at 516.606 kb on - strand, within GFF470at 516.822 kb on - strand, within GFF470at 516.822 kb on - strand, within GFF470at 516.822 kb on - strand, within GFF470at 516.866 kb on + strand, within GFF470at 516.867 kb on - strand, within GFF470at 516.867 kb on - strand, within GFF470at 516.930 kb on - strandat 516.987 kb on - strandat 517.010 kb on + strandat 517.010 kb on + strandat 517.010 kb on + strandat 517.011 kb on - strandat 517.011 kb on - strandat 517.011 kb on - strandat 517.011 kb on - strandat 517.178 kb on + strandat 517.179 kb on - strandat 517.211 kb on + strand, within GFF471at 517.212 kb on - strand, within GFF471at 517.328 kb on + strand, within GFF471at 517.328 kb on + strand, within GFF471at 517.328 kb on + strand, within GFF471at 517.329 kb on - strand, within GFF471at 517.329 kb on - strand, within GFF471at 517.554 kb on - strand, within GFF471at 517.554 kb on - strand, within GFF471at 517.629 kb on - strand, within GFF471at 517.629 kb on - strand, within GFF471at 517.629 kb on - strand, within GFF471at 517.769 kb on + strand, within GFF471at 517.942 kb on + strand, within GFF471at 517.943 kb on - strand, within GFF471at 518.084 kb on - strand, within GFF471at 518.096 kb on + strand, within GFF471at 518.096 kb on + strand, within GFF471at 518.096 kb on + strand, within GFF471at 518.097 kb on - strand, within GFF471at 518.097 kb on - strand, within GFF471at 518.097 kb on - strand, within GFF471at 518.097 kb on - strand, within GFF471at 518.222 kb on + strand, within GFF471at 518.222 kb on + strand, within GFF471at 518.457 kb on + strandat 518.457 kb on + strandat 518.661 kb on + strandat 518.662 kb on - strandat 518.662 kb on - strandat 518.662 kb on - strandat 518.662 kb on - strandat 518.662 kb on - strandat 518.662 kb on - strandat 518.747 kb on + strand, within GFF472at 518.748 kb on - strand, within GFF472at 518.916 kb on - strand, within GFF472at 519.003 kb on + strand, within GFF472at 519.005 kb on + strand, within GFF472at 519.005 kb on + strand, within GFF472at 519.005 kb on + strand, within GFF472at 519.005 kb on + strand, within GFF472at 519.006 kb on - strand, within GFF472at 519.006 kb on - strand, within GFF472at 519.006 kb on - strand, within GFF472at 519.006 kb on - strand, within GFF472at 519.014 kb on + strand, within GFF472at 519.015 kb on - strand, within GFF472at 519.015 kb on - strand, within GFF472at 519.015 kb on - strand, within GFF472at 519.026 kb on + strand, within GFF472at 519.038 kb on + strand, within GFF472at 519.039 kb on - strand, within GFF472at 519.039 kb on - strand, within GFF472at 519.116 kb on + strand, within GFF472at 519.117 kb on - strand, within GFF472at 519.189 kb on + strand, within GFF472at 519.189 kb on + strand, within GFF472at 519.335 kb on + strand, within GFF472at 519.336 kb on - strand, within GFF472

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
516,183 + +0.1
516,190 + -0.2
516,226 + -1.1
516,227 - +0.2
516,227 - +0.0
516,246 - -0.8
516,246 - +0.9
516,258 + +0.4
516,258 + -0.9
516,258 + -0.8
516,258 + -0.4
516,258 + -1.0
516,258 + -0.8
516,258 + +0.8
516,259 - +0.7
516,259 - -1.5
516,259 - -1.2
516,259 - -1.4
516,277 + -1.4
516,277 + -0.7
516,277 + -0.0
516,278 - -0.5
516,278 - +0.4
516,293 + -0.7
516,293 + +0.2
516,293 + -0.1
516,293 + -2.0
516,380 + GFF470 0.12 -0.8
516,605 + GFF470 0.44 -0.2
516,605 + GFF470 0.44 +0.2
516,605 + GFF470 0.44 -0.2
516,605 + GFF470 0.44 -0.4
516,605 + GFF470 0.44 -1.8
516,606 - GFF470 0.44 +0.1
516,606 - GFF470 0.44 +0.1
516,606 - GFF470 0.44 -0.2
516,822 - GFF470 0.76 +0.6
516,822 - GFF470 0.76 +0.9
516,822 - GFF470 0.76 -1.3
516,866 + GFF470 0.82 -1.2
516,867 - GFF470 0.82 -0.4
516,867 - GFF470 0.82 +0.7
516,930 - -1.2
516,987 - -0.5
517,010 + +0.1
517,010 + -0.7
517,010 + -0.5
517,011 - -0.5
517,011 - -0.1
517,011 - +0.2
517,011 - -0.2
517,178 + -0.3
517,179 - +0.1
517,211 + GFF471 0.11 -0.1
517,212 - GFF471 0.11 -0.5
517,328 + GFF471 0.20 -0.4
517,328 + GFF471 0.20 -1.0
517,328 + GFF471 0.20 -0.9
517,329 - GFF471 0.20 -1.0
517,329 - GFF471 0.20 -1.2
517,554 - GFF471 0.37 -0.2
517,554 - GFF471 0.37 -1.1
517,629 - GFF471 0.42 -1.1
517,629 - GFF471 0.42 -1.0
517,629 - GFF471 0.42 -0.9
517,769 + GFF471 0.52 -0.2
517,942 + GFF471 0.65 +1.1
517,943 - GFF471 0.65 +0.2
518,084 - GFF471 0.76 -0.9
518,096 + GFF471 0.77 -0.6
518,096 + GFF471 0.77 +0.2
518,096 + GFF471 0.77 +0.4
518,097 - GFF471 0.77 -1.2
518,097 - GFF471 0.77 -0.7
518,097 - GFF471 0.77 -1.8
518,097 - GFF471 0.77 -0.5
518,222 + GFF471 0.86 -0.7
518,222 + GFF471 0.86 -3.1
518,457 + -1.3
518,457 + +0.0
518,661 + -0.3
518,662 - +0.2
518,662 - -1.1
518,662 - -0.2
518,662 - +0.1
518,662 - -1.0
518,662 - -0.7
518,747 + GFF472 0.16 +0.9
518,748 - GFF472 0.16 +0.8
518,916 - GFF472 0.28 +0.7
519,003 + GFF472 0.35 +0.6
519,005 + GFF472 0.35 +0.1
519,005 + GFF472 0.35 -1.1
519,005 + GFF472 0.35 -0.5
519,005 + GFF472 0.35 -2.3
519,006 - GFF472 0.35 +1.1
519,006 - GFF472 0.35 -0.2
519,006 - GFF472 0.35 -1.1
519,006 - GFF472 0.35 -0.6
519,014 + GFF472 0.36 +0.8
519,015 - GFF472 0.36 +0.9
519,015 - GFF472 0.36 -0.9
519,015 - GFF472 0.36 -0.4
519,026 + GFF472 0.36 -1.0
519,038 + GFF472 0.37 +0.7
519,039 - GFF472 0.37 +0.7
519,039 - GFF472 0.37 -0.2
519,116 + GFF472 0.43 -0.4
519,117 - GFF472 0.43 -0.2
519,189 + GFF472 0.49 -1.3
519,189 + GFF472 0.49 -0.1
519,335 + GFF472 0.60 -0.6
519,336 - GFF472 0.60 +0.1

Or see this region's nucleotide sequence