Strain Fitness in Pseudomonas sp. DMC3 around GFF4468

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4467 and GFF4468 are separated by 105 nucleotidesGFF4468 and GFF4469 are separated by 63 nucleotidesGFF4469 and GFF4470 are separated by 181 nucleotides GFF4467 - Malate:quinone oxidoreductase, at 185,206 to 186,714 GFF4467 GFF4468 - hypothetical protein, at 186,820 to 187,107 GFF4468 GFF4469 - hypothetical protein, at 187,171 to 187,650 GFF4469 GFF4470 - Hypoxanthine-guanine phosphoribosyltransferase, at 187,832 to 188,389 GFF4470 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1 2at 186.740 kb on - strandat 186.764 kb on + strandat 186.784 kb on + strandat 186.784 kb on + strandat 186.784 kb on + strandat 186.785 kb on - strandat 186.785 kb on - strandat 186.795 kb on + strandat 186.796 kb on - strandat 186.796 kb on - strandat 186.807 kb on + strandat 186.807 kb on + strandat 186.807 kb on + strandat 186.807 kb on + strandat 186.808 kb on - strandat 186.851 kb on + strand, within GFF4468at 186.852 kb on - strand, within GFF4468at 186.852 kb on - strand, within GFF4468at 186.852 kb on - strand, within GFF4468at 186.926 kb on + strand, within GFF4468at 186.927 kb on - strand, within GFF4468at 187.095 kb on + strandat 187.096 kb on - strandat 187.096 kb on - strandat 187.101 kb on + strandat 187.101 kb on + strandat 187.212 kb on + strandat 187.213 kb on - strandat 187.226 kb on + strand, within GFF4469at 187.227 kb on - strand, within GFF4469at 187.244 kb on + strand, within GFF4469at 187.244 kb on + strand, within GFF4469at 187.244 kb on + strand, within GFF4469at 187.244 kb on + strand, within GFF4469at 187.244 kb on + strand, within GFF4469at 187.244 kb on + strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.245 kb on - strand, within GFF4469at 187.258 kb on - strand, within GFF4469at 187.331 kb on + strand, within GFF4469at 187.331 kb on + strand, within GFF4469at 187.331 kb on + strand, within GFF4469at 187.331 kb on + strand, within GFF4469at 187.332 kb on - strand, within GFF4469at 187.332 kb on - strand, within GFF4469at 187.496 kb on + strand, within GFF4469at 187.682 kb on + strandat 187.682 kb on + strandat 187.682 kb on + strandat 187.682 kb on + strandat 187.682 kb on + strandat 187.683 kb on - strandat 187.683 kb on - strandat 187.683 kb on - strandat 187.683 kb on - strandat 187.683 kb on - strandat 187.683 kb on - strandat 187.683 kb on - strandat 187.683 kb on - strandat 187.683 kb on - strandat 187.816 kb on + strandat 187.816 kb on + strandat 187.816 kb on + strandat 187.816 kb on + strandat 187.833 kb on + strandat 187.833 kb on + strandat 187.833 kb on + strandat 187.834 kb on - strandat 187.834 kb on - strandat 187.834 kb on - strandat 187.875 kb on + strandat 187.876 kb on - strandat 187.884 kb on + strandat 187.884 kb on + strandat 187.884 kb on + strandat 187.884 kb on + strandat 187.884 kb on + strandat 187.885 kb on - strandat 187.885 kb on - strandat 187.885 kb on - strandat 187.885 kb on - strandat 187.885 kb on - strandat 187.885 kb on - strandat 188.051 kb on - strand, within GFF4470

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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186,740 - +0.2
186,764 + -0.4
186,784 + +0.3
186,784 + +0.7
186,784 + -0.2
186,785 - -0.3
186,785 - -0.4
186,795 + -0.1
186,796 - +0.5
186,796 - -1.4
186,807 + -0.3
186,807 + -1.2
186,807 + -0.3
186,807 + -0.1
186,808 - +0.4
186,851 + GFF4468 0.11 -0.1
186,852 - GFF4468 0.11 -2.2
186,852 - GFF4468 0.11 -0.3
186,852 - GFF4468 0.11 -0.3
186,926 + GFF4468 0.37 -0.7
186,927 - GFF4468 0.37 -0.3
187,095 + -0.4
187,096 - -1.2
187,096 - +0.7
187,101 + +0.7
187,101 + +0.9
187,212 + +0.6
187,213 - +0.1
187,226 + GFF4469 0.11 -1.0
187,227 - GFF4469 0.12 -0.9
187,244 + GFF4469 0.15 +0.2
187,244 + GFF4469 0.15 -0.3
187,244 + GFF4469 0.15 -0.4
187,244 + GFF4469 0.15 -0.1
187,244 + GFF4469 0.15 -0.1
187,244 + GFF4469 0.15 +0.5
187,245 - GFF4469 0.15 -0.0
187,245 - GFF4469 0.15 -1.3
187,245 - GFF4469 0.15 -0.3
187,245 - GFF4469 0.15 -0.5
187,245 - GFF4469 0.15 +0.5
187,245 - GFF4469 0.15 +1.7
187,245 - GFF4469 0.15 +0.6
187,245 - GFF4469 0.15 -0.4
187,245 - GFF4469 0.15 +0.7
187,245 - GFF4469 0.15 -0.2
187,245 - GFF4469 0.15 +0.4
187,245 - GFF4469 0.15 +1.2
187,245 - GFF4469 0.15 +0.7
187,258 - GFF4469 0.18 +0.7
187,331 + GFF4469 0.33 +0.6
187,331 + GFF4469 0.33 +0.4
187,331 + GFF4469 0.33 -0.2
187,331 + GFF4469 0.33 +0.4
187,332 - GFF4469 0.34 +0.2
187,332 - GFF4469 0.34 +1.2
187,496 + GFF4469 0.68 -0.7
187,682 + -0.1
187,682 + +0.7
187,682 + +0.3
187,682 + -1.3
187,682 + -2.3
187,683 - -0.1
187,683 - -0.4
187,683 - -0.6
187,683 - +0.2
187,683 - +0.7
187,683 - -2.1
187,683 - +0.3
187,683 - -0.8
187,683 - -0.2
187,816 + -0.3
187,816 + -0.5
187,816 + +0.7
187,816 + +0.8
187,833 + -2.4
187,833 + -0.1
187,833 + -0.1
187,834 - -0.7
187,834 - +0.7
187,834 - -0.3
187,875 + +0.2
187,876 - -0.6
187,884 + -0.7
187,884 + -0.2
187,884 + +0.5
187,884 + -0.8
187,884 + +2.0
187,885 - -1.7
187,885 - +1.7
187,885 - +0.1
187,885 - +0.4
187,885 - -1.3
187,885 - +1.0
188,051 - GFF4470 0.39 -0.7

Or see this region's nucleotide sequence