Strain Fitness in Pseudomonas sp. DMC3 around GFF4099

Experiment: D-Glucose and D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4097 and GFF4098 are separated by 0 nucleotidesGFF4098 and GFF4099 overlap by 1 nucleotidesGFF4099 and GFF4100 are separated by 270 nucleotides GFF4097 - hypothetical protein, at 52,802 to 53,062 GFF4097 GFF4098 - Imidazole glycerol phosphate synthase subunit HisH, at 53,063 to 53,701 GFF4098 GFF4099 - Histidine biosynthesis bifunctional protein HisB, at 53,701 to 54,294 GFF4099 GFF4100 - hypothetical protein, at 54,565 to 56,229 GFF4100 Position (kb) 53 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 52.738 kb on + strandat 52.764 kb on - strandat 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.890 kb on + strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.891 kb on - strand, within GFF4097at 52.893 kb on + strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 52.894 kb on - strand, within GFF4097at 53.064 kb on + strandat 53.065 kb on - strandat 53.065 kb on - strandat 53.191 kb on - strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.235 kb on + strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.236 kb on - strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.238 kb on + strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.239 kb on - strand, within GFF4098at 53.253 kb on + strand, within GFF4098at 53.254 kb on - strand, within GFF4098at 53.568 kb on - strand, within GFF4098at 53.568 kb on - strand, within GFF4098at 53.702 kb on + strandat 53.703 kb on - strandat 53.927 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.005 kb on + strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.006 kb on - strand, within GFF4099at 54.076 kb on - strand, within GFF4099at 54.093 kb on + strand, within GFF4099at 54.093 kb on + strand, within GFF4099at 54.093 kb on + strand, within GFF4099at 54.093 kb on + strand, within GFF4099at 54.094 kb on - strand, within GFF4099at 54.094 kb on - strand, within GFF4099at 54.094 kb on - strand, within GFF4099at 54.190 kb on + strand, within GFF4099at 54.190 kb on + strand, within GFF4099at 54.190 kb on + strand, within GFF4099at 54.191 kb on - strand, within GFF4099at 54.283 kb on - strandat 54.283 kb on - strandat 54.283 kb on - strandat 54.337 kb on + strandat 54.337 kb on + strandat 54.337 kb on + strandat 54.337 kb on + strandat 54.337 kb on + strandat 54.338 kb on - strandat 54.338 kb on - strandat 54.338 kb on - strandat 54.387 kb on + strandat 54.421 kb on + strandat 54.421 kb on + strandat 54.421 kb on + strandat 54.421 kb on + strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.422 kb on - strandat 54.556 kb on + strandat 54.556 kb on + strandat 54.556 kb on + strandat 54.556 kb on + strandat 54.566 kb on + strandat 54.577 kb on + strandat 54.578 kb on - strandat 54.625 kb on - strandat 54.761 kb on + strand, within GFF4100at 54.761 kb on + strand, within GFF4100at 54.762 kb on - strand, within GFF4100at 54.762 kb on - strand, within GFF4100at 54.830 kb on + strand, within GFF4100at 54.830 kb on + strand, within GFF4100at 54.830 kb on + strand, within GFF4100at 54.830 kb on + strand, within GFF4100at 54.830 kb on + strand, within GFF4100at 54.830 kb on + strand, within GFF4100at 54.830 kb on + strand, within GFF4100at 54.831 kb on - strand, within GFF4100at 54.831 kb on - strand, within GFF4100at 54.831 kb on - strand, within GFF4100at 54.831 kb on - strand, within GFF4100at 54.831 kb on - strand, within GFF4100at 54.882 kb on - strand, within GFF4100at 54.893 kb on + strand, within GFF4100at 54.893 kb on + strand, within GFF4100at 54.893 kb on + strand, within GFF4100at 54.894 kb on - strand, within GFF4100at 54.894 kb on - strand, within GFF4100at 55.025 kb on + strand, within GFF4100at 55.025 kb on + strand, within GFF4100at 55.026 kb on - strand, within GFF4100at 55.103 kb on + strand, within GFF4100at 55.136 kb on + strand, within GFF4100at 55.136 kb on + strand, within GFF4100at 55.136 kb on + strand, within GFF4100at 55.136 kb on + strand, within GFF4100at 55.136 kb on + strand, within GFF4100at 55.137 kb on - strand, within GFF4100at 55.137 kb on - strand, within GFF4100at 55.157 kb on + strand, within GFF4100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
remove
52,738 + -1.7
52,764 - +0.7
52,890 + GFF4097 0.34 -2.2
52,890 + GFF4097 0.34 -1.1
52,890 + GFF4097 0.34 -2.0
52,890 + GFF4097 0.34 -3.4
52,890 + GFF4097 0.34 -4.3
52,890 + GFF4097 0.34 -1.6
52,890 + GFF4097 0.34 -0.6
52,891 - GFF4097 0.34 +0.8
52,891 - GFF4097 0.34 -0.4
52,891 - GFF4097 0.34 -0.1
52,891 - GFF4097 0.34 -0.2
52,893 + GFF4097 0.35 -3.3
52,894 - GFF4097 0.35 +0.7
52,894 - GFF4097 0.35 +0.7
52,894 - GFF4097 0.35 -0.2
53,064 + -0.1
53,065 - +0.5
53,065 - +0.1
53,191 - GFF4098 0.20 -1.7
53,235 + GFF4098 0.27 -2.7
53,235 + GFF4098 0.27 -2.8
53,235 + GFF4098 0.27 -3.3
53,235 + GFF4098 0.27 -2.8
53,235 + GFF4098 0.27 -2.7
53,235 + GFF4098 0.27 -2.2
53,235 + GFF4098 0.27 -1.6
53,236 - GFF4098 0.27 -4.1
53,236 - GFF4098 0.27 -0.5
53,236 - GFF4098 0.27 -3.1
53,236 - GFF4098 0.27 -3.3
53,236 - GFF4098 0.27 -1.0
53,236 - GFF4098 0.27 +0.6
53,236 - GFF4098 0.27 -2.1
53,236 - GFF4098 0.27 -2.7
53,238 + GFF4098 0.27 -3.0
53,238 + GFF4098 0.27 -1.8
53,238 + GFF4098 0.27 -2.0
53,238 + GFF4098 0.27 -2.3
53,239 - GFF4098 0.28 -0.7
53,239 - GFF4098 0.28 -2.1
53,239 - GFF4098 0.28 -4.0
53,239 - GFF4098 0.28 -2.3
53,239 - GFF4098 0.28 -2.1
53,253 + GFF4098 0.30 -3.1
53,254 - GFF4098 0.30 -1.8
53,568 - GFF4098 0.79 -2.0
53,568 - GFF4098 0.79 -2.7
53,702 + -1.5
53,703 - -0.7
53,927 + GFF4099 0.38 -3.0
54,005 + GFF4099 0.51 -3.5
54,005 + GFF4099 0.51 -3.5
54,005 + GFF4099 0.51 -3.1
54,005 + GFF4099 0.51 -2.3
54,005 + GFF4099 0.51 -2.2
54,005 + GFF4099 0.51 -1.2
54,006 - GFF4099 0.51 -0.7
54,006 - GFF4099 0.51 -3.5
54,006 - GFF4099 0.51 -1.8
54,006 - GFF4099 0.51 -2.0
54,006 - GFF4099 0.51 -3.6
54,076 - GFF4099 0.63 -3.9
54,093 + GFF4099 0.66 -0.7
54,093 + GFF4099 0.66 -2.3
54,093 + GFF4099 0.66 -4.0
54,093 + GFF4099 0.66 -2.4
54,094 - GFF4099 0.66 -3.5
54,094 - GFF4099 0.66 -1.2
54,094 - GFF4099 0.66 -2.8
54,190 + GFF4099 0.82 -1.0
54,190 + GFF4099 0.82 -3.6
54,190 + GFF4099 0.82 -2.6
54,191 - GFF4099 0.82 -3.1
54,283 - -2.1
54,283 - -0.5
54,283 - -4.0
54,337 + -0.9
54,337 + -0.3
54,337 + -1.1
54,337 + -1.9
54,337 + -0.7
54,338 - +0.9
54,338 - +0.1
54,338 - +0.9
54,387 + -1.3
54,421 + +0.4
54,421 + +0.1
54,421 + +1.1
54,421 + -0.7
54,422 - +1.3
54,422 - +0.5
54,422 - -1.3
54,422 - -1.7
54,422 - +0.0
54,422 - -0.3
54,556 + -0.3
54,556 + -0.3
54,556 + +0.6
54,556 + +1.9
54,566 + +0.9
54,577 + +1.4
54,578 - -0.9
54,625 - -0.6
54,761 + GFF4100 0.12 -2.4
54,761 + GFF4100 0.12 -0.3
54,762 - GFF4100 0.12 +0.7
54,762 - GFF4100 0.12 -0.7
54,830 + GFF4100 0.16 +0.4
54,830 + GFF4100 0.16 +0.7
54,830 + GFF4100 0.16 -0.3
54,830 + GFF4100 0.16 -0.5
54,830 + GFF4100 0.16 +1.0
54,830 + GFF4100 0.16 +0.4
54,830 + GFF4100 0.16 +0.0
54,831 - GFF4100 0.16 -0.8
54,831 - GFF4100 0.16 -0.8
54,831 - GFF4100 0.16 +0.0
54,831 - GFF4100 0.16 +0.6
54,831 - GFF4100 0.16 -0.7
54,882 - GFF4100 0.19 +0.7
54,893 + GFF4100 0.20 +0.9
54,893 + GFF4100 0.20 -1.4
54,893 + GFF4100 0.20 -0.1
54,894 - GFF4100 0.20 +0.1
54,894 - GFF4100 0.20 -0.7
55,025 + GFF4100 0.28 -0.1
55,025 + GFF4100 0.28 +0.9
55,026 - GFF4100 0.28 -0.8
55,103 + GFF4100 0.32 +0.1
55,136 + GFF4100 0.34 -2.3
55,136 + GFF4100 0.34 -0.8
55,136 + GFF4100 0.34 -2.4
55,136 + GFF4100 0.34 -1.1
55,136 + GFF4100 0.34 -0.4
55,137 - GFF4100 0.34 +1.9
55,137 - GFF4100 0.34 +0.4
55,157 + GFF4100 0.36 -0.3

Or see this region's nucleotide sequence