Strain Fitness in Pseudomonas sp. DMC3 around GFF4080

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4078 and GFF4079 overlap by 4 nucleotidesGFF4079 and GFF4080 are separated by 230 nucleotidesGFF4080 and GFF4081 overlap by 4 nucleotides GFF4078 - hypothetical protein, at 32,083 to 32,595 GFF4078 GFF4079 - hypothetical protein, at 32,592 to 33,215 GFF4079 GFF4080 - Sensory histidine kinase/phosphatase NtrB, at 33,446 to 34,531 GFF4080 GFF4081 - DNA-binding transcriptional regulator NtrC, at 34,528 to 35,964 GFF4081 Position (kb) 33 34 35Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 32.586 kb on + strandat 32.586 kb on + strandat 32.586 kb on + strandat 32.587 kb on - strandat 32.587 kb on - strandat 32.657 kb on + strand, within GFF4079at 32.658 kb on - strand, within GFF4079at 32.658 kb on - strand, within GFF4079at 32.661 kb on + strand, within GFF4079at 32.662 kb on - strand, within GFF4079at 32.662 kb on - strand, within GFF4079at 32.662 kb on - strand, within GFF4079at 32.662 kb on - strand, within GFF4079at 32.662 kb on - strand, within GFF4079at 32.817 kb on + strand, within GFF4079at 32.855 kb on + strand, within GFF4079at 32.855 kb on + strand, within GFF4079at 32.855 kb on + strand, within GFF4079at 32.855 kb on + strand, within GFF4079at 32.856 kb on - strand, within GFF4079at 32.856 kb on - strand, within GFF4079at 32.856 kb on - strand, within GFF4079at 33.050 kb on + strand, within GFF4079at 33.141 kb on + strand, within GFF4079at 33.141 kb on + strand, within GFF4079at 33.141 kb on + strand, within GFF4079at 33.141 kb on + strand, within GFF4079at 33.142 kb on - strand, within GFF4079at 33.142 kb on - strand, within GFF4079at 33.142 kb on - strand, within GFF4079at 33.142 kb on - strand, within GFF4079at 33.213 kb on + strandat 33.213 kb on + strandat 33.214 kb on - strandat 33.214 kb on - strandat 33.319 kb on + strandat 33.353 kb on - strandat 33.454 kb on - strandat 33.463 kb on + strandat 33.463 kb on + strandat 33.464 kb on - strandat 33.464 kb on - strandat 33.465 kb on + strandat 33.465 kb on + strandat 33.465 kb on + strandat 33.465 kb on + strandat 33.465 kb on + strandat 33.466 kb on - strandat 33.466 kb on - strandat 33.466 kb on - strandat 33.466 kb on - strandat 33.466 kb on - strandat 33.533 kb on + strandat 33.534 kb on - strandat 33.534 kb on - strandat 33.725 kb on + strand, within GFF4080at 33.954 kb on - strand, within GFF4080at 34.125 kb on - strand, within GFF4080at 34.146 kb on + strand, within GFF4080at 34.146 kb on + strand, within GFF4080at 34.147 kb on - strand, within GFF4080at 34.536 kb on + strandat 34.572 kb on + strandat 34.572 kb on + strandat 34.573 kb on - strandat 34.573 kb on - strandat 34.810 kb on + strand, within GFF4081at 34.811 kb on - strand, within GFF4081at 34.811 kb on - strand, within GFF4081at 35.314 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.351 kb on + strand, within GFF4081at 35.352 kb on - strand, within GFF4081at 35.352 kb on - strand, within GFF4081at 35.352 kb on - strand, within GFF4081at 35.352 kb on - strand, within GFF4081at 35.352 kb on - strand, within GFF4081at 35.352 kb on - strand, within GFF4081at 35.352 kb on - strand, within GFF4081

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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32,586 + +0.7
32,586 + -0.5
32,586 + +1.1
32,587 - -0.8
32,587 - -0.7
32,657 + GFF4079 0.10 +0.3
32,658 - GFF4079 0.11 -0.8
32,658 - GFF4079 0.11 -0.8
32,661 + GFF4079 0.11 +0.4
32,662 - GFF4079 0.11 +0.7
32,662 - GFF4079 0.11 -0.6
32,662 - GFF4079 0.11 +0.0
32,662 - GFF4079 0.11 -0.7
32,662 - GFF4079 0.11 +0.6
32,817 + GFF4079 0.36 +1.1
32,855 + GFF4079 0.42 +0.5
32,855 + GFF4079 0.42 +0.4
32,855 + GFF4079 0.42 +1.5
32,855 + GFF4079 0.42 +1.6
32,856 - GFF4079 0.42 +1.3
32,856 - GFF4079 0.42 +0.1
32,856 - GFF4079 0.42 +0.5
33,050 + GFF4079 0.73 -0.1
33,141 + GFF4079 0.88 -0.5
33,141 + GFF4079 0.88 +0.0
33,141 + GFF4079 0.88 -0.2
33,141 + GFF4079 0.88 +2.7
33,142 - GFF4079 0.88 -0.9
33,142 - GFF4079 0.88 +0.9
33,142 - GFF4079 0.88 +0.7
33,142 - GFF4079 0.88 -1.3
33,213 + +2.7
33,213 + +1.5
33,214 - -1.1
33,214 - -0.1
33,319 + +0.0
33,353 - -0.4
33,454 - -3.9
33,463 + -0.1
33,463 + -0.5
33,464 - -3.4
33,464 - -1.6
33,465 + -3.7
33,465 + -1.5
33,465 + -2.7
33,465 + -2.9
33,465 + -3.0
33,466 - -0.5
33,466 - -0.7
33,466 - -3.4
33,466 - -4.0
33,466 - -2.7
33,533 + -2.3
33,534 - -2.0
33,534 - -2.4
33,725 + GFF4080 0.26 -1.5
33,954 - GFF4080 0.47 -2.9
34,125 - GFF4080 0.63 -3.2
34,146 + GFF4080 0.64 -1.1
34,146 + GFF4080 0.64 -3.1
34,147 - GFF4080 0.65 -2.2
34,536 + -4.1
34,572 + -2.0
34,572 + -0.1
34,573 - -1.1
34,573 - -4.3
34,810 + GFF4081 0.20 -2.3
34,811 - GFF4081 0.20 -2.3
34,811 - GFF4081 0.20 -3.0
35,314 + GFF4081 0.55 -1.6
35,351 + GFF4081 0.57 -3.7
35,351 + GFF4081 0.57 -1.8
35,351 + GFF4081 0.57 -3.8
35,351 + GFF4081 0.57 -4.1
35,351 + GFF4081 0.57 -2.0
35,351 + GFF4081 0.57 -2.5
35,351 + GFF4081 0.57 -3.1
35,351 + GFF4081 0.57 -1.0
35,351 + GFF4081 0.57 -2.4
35,351 + GFF4081 0.57 -1.8
35,351 + GFF4081 0.57 -3.2
35,351 + GFF4081 0.57 -1.0
35,351 + GFF4081 0.57 -3.7
35,352 - GFF4081 0.57 -3.1
35,352 - GFF4081 0.57 -2.9
35,352 - GFF4081 0.57 -2.4
35,352 - GFF4081 0.57 -3.4
35,352 - GFF4081 0.57 -1.5
35,352 - GFF4081 0.57 -2.5
35,352 - GFF4081 0.57 -1.0

Or see this region's nucleotide sequence