Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3975 and GFF3976 are separated by 120 nucleotides GFF3976 and GFF3977 are separated by 139 nucleotides GFF3977 and GFF3978 are separated by 204 nucleotides GFF3978 and GFF3979 are separated by 148 nucleotides
GFF3975 - hypothetical protein, at 236,678 to 236,983
GFF3975
GFF3976 - FKBP-type 22 kDa peptidyl-prolyl cis-trans isomerase, at 237,104 to 237,721
GFF3976
GFF3977 - hypothetical protein, at 237,861 to 238,118
GFF3977
GFF3978 - hypothetical protein, at 238,323 to 238,664
GFF3978
GFF3979 - Octaprenyl diphosphate synthase, at 238,813 to 239,781
GFF3979
Position (kb) 237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 236.981 kb on + strand at 237.004 kb on + strand at 237.005 kb on - strand at 237.005 kb on - strand at 237.013 kb on + strand at 237.013 kb on + strand at 237.014 kb on - strand at 237.014 kb on - strand at 237.115 kb on - strand at 237.115 kb on - strand at 237.115 kb on - strand at 237.115 kb on - strand at 237.146 kb on + strand at 237.147 kb on - strand at 237.147 kb on - strand at 237.427 kb on - strand, within GFF3976 at 237.427 kb on - strand, within GFF3976 at 237.483 kb on - strand, within GFF3976 at 237.483 kb on - strand, within GFF3976 at 237.524 kb on + strand, within GFF3976 at 237.525 kb on - strand, within GFF3976 at 237.525 kb on - strand, within GFF3976 at 237.525 kb on - strand, within GFF3976 at 237.623 kb on + strand, within GFF3976 at 237.623 kb on + strand, within GFF3976 at 237.623 kb on + strand, within GFF3976 at 237.623 kb on + strand, within GFF3976 at 237.624 kb on - strand, within GFF3976 at 237.719 kb on + strand at 237.719 kb on + strand at 237.719 kb on + strand at 237.720 kb on - strand at 237.720 kb on - strand at 237.722 kb on + strand at 237.852 kb on + strand at 237.852 kb on + strand at 237.913 kb on + strand, within GFF3977 at 237.913 kb on + strand, within GFF3977 at 238.075 kb on + strand, within GFF3977 at 238.111 kb on + strand at 238.111 kb on + strand at 238.111 kb on + strand at 238.111 kb on + strand at 238.111 kb on + strand at 238.111 kb on + strand at 238.112 kb on - strand at 238.112 kb on - strand at 238.112 kb on - strand at 238.171 kb on - strand at 238.171 kb on - strand at 238.181 kb on + strand at 238.181 kb on + strand at 238.182 kb on - strand at 238.618 kb on + strand, within GFF3978 at 238.618 kb on + strand, within GFF3978 at 238.619 kb on - strand, within GFF3978 at 238.619 kb on - strand, within GFF3978 at 238.619 kb on - strand, within GFF3978 at 238.665 kb on + strand at 238.665 kb on + strand at 238.666 kb on - strand at 238.691 kb on + strand at 238.692 kb on - strand at 238.707 kb on + strand at 238.707 kb on + strand at 238.707 kb on + strand at 238.708 kb on - strand at 238.708 kb on - strand at 238.708 kb on - strand at 238.708 kb on - strand at 238.710 kb on - strand at 238.710 kb on - strand at 238.710 kb on - strand at 238.768 kb on - strand at 238.811 kb on + strand at 238.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 236,981 + -1.0 237,004 + -0.2 237,005 - +0.4 237,005 - +1.4 237,013 + +0.8 237,013 + -0.5 237,014 - -0.7 237,014 - -0.8 237,115 - -1.2 237,115 - -0.2 237,115 - +0.2 237,115 - -0.2 237,146 + -0.2 237,147 - +0.6 237,147 - -0.5 237,427 - GFF3976 0.52 +0.3 237,427 - GFF3976 0.52 +0.0 237,483 - GFF3976 0.61 +0.1 237,483 - GFF3976 0.61 -1.0 237,524 + GFF3976 0.68 -0.3 237,525 - GFF3976 0.68 +0.0 237,525 - GFF3976 0.68 +0.3 237,525 - GFF3976 0.68 +0.4 237,623 + GFF3976 0.84 -0.2 237,623 + GFF3976 0.84 -0.6 237,623 + GFF3976 0.84 +1.4 237,623 + GFF3976 0.84 -0.1 237,624 - GFF3976 0.84 -0.2 237,719 + -0.2 237,719 + +1.5 237,719 + +0.9 237,720 - +0.4 237,720 - -0.0 237,722 + +0.0 237,852 + -0.6 237,852 + +0.0 237,913 + GFF3977 0.20 -3.1 237,913 + GFF3977 0.20 -0.2 238,075 + GFF3977 0.83 -1.1 238,111 + -0.2 238,111 + +0.0 238,111 + +1.4 238,111 + +1.5 238,111 + -0.2 238,111 + +0.0 238,112 - +0.9 238,112 - +0.1 238,112 - -0.3 238,171 - +0.1 238,171 - -0.2 238,181 + +2.1 238,181 + -0.4 238,182 - +0.5 238,618 + GFF3978 0.86 -0.6 238,618 + GFF3978 0.86 -0.6 238,619 - GFF3978 0.87 -0.5 238,619 - GFF3978 0.87 +0.1 238,619 - GFF3978 0.87 +1.1 238,665 + +0.1 238,665 + +0.6 238,666 - -0.8 238,691 + -0.4 238,692 - +0.3 238,707 + -0.9 238,707 + -0.7 238,707 + +0.0 238,708 - -0.2 238,708 - -0.6 238,708 - -0.2 238,708 - -1.3 238,710 - +0.4 238,710 - -0.1 238,710 - -0.6 238,768 - -0.4 238,811 + +0.7 238,812 - -0.4
Or see this region's nucleotide sequence