Strain Fitness in Pseudomonas sp. DMC3 around GFF3927

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3926 and GFF3927 are separated by 82 nucleotidesGFF3927 and GFF3928 are separated by 111 nucleotidesGFF3928 and GFF3929 overlap by 4 nucleotides GFF3926 - hypothetical protein, at 181,208 to 182,128 GFF3926 GFF3927 - Acetyltransferase, at 182,211 to 182,780 GFF3927 GFF3928 - Acyl-CoA thioesterase 2, at 182,892 to 183,761 GFF3928 GFF3929 - Phosphoglycolate phosphatase, at 183,758 to 184,351 GFF3929 Position (kb) 182 183Strain fitness (log2 ratio) -2 -1 0 1 2at 181.399 kb on - strand, within GFF3926at 181.399 kb on - strand, within GFF3926at 181.441 kb on - strand, within GFF3926at 181.461 kb on + strand, within GFF3926at 181.462 kb on - strand, within GFF3926at 181.462 kb on - strand, within GFF3926at 181.462 kb on - strand, within GFF3926at 181.476 kb on + strand, within GFF3926at 181.476 kb on + strand, within GFF3926at 181.506 kb on + strand, within GFF3926at 181.704 kb on + strand, within GFF3926at 181.758 kb on + strand, within GFF3926at 181.929 kb on + strand, within GFF3926at 181.929 kb on + strand, within GFF3926at 181.930 kb on - strand, within GFF3926at 181.930 kb on - strand, within GFF3926at 181.940 kb on - strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.941 kb on + strand, within GFF3926at 181.942 kb on - strand, within GFF3926at 181.942 kb on - strand, within GFF3926at 182.097 kb on + strandat 182.097 kb on + strandat 182.098 kb on - strandat 182.098 kb on - strandat 182.098 kb on - strandat 182.109 kb on + strandat 182.109 kb on + strandat 182.110 kb on - strandat 182.110 kb on - strandat 182.110 kb on - strandat 182.110 kb on - strandat 182.110 kb on - strandat 182.169 kb on + strandat 182.169 kb on + strandat 182.169 kb on + strandat 182.180 kb on + strandat 182.181 kb on - strandat 182.181 kb on - strandat 182.221 kb on + strandat 182.319 kb on + strand, within GFF3927at 182.538 kb on + strand, within GFF3927at 182.778 kb on + strandat 182.778 kb on + strandat 182.779 kb on - strandat 182.779 kb on - strandat 182.779 kb on - strandat 182.779 kb on - strandat 182.779 kb on - strandat 182.796 kb on + strandat 182.796 kb on + strandat 182.797 kb on - strandat 182.797 kb on - strandat 182.797 kb on - strandat 182.797 kb on - strandat 182.797 kb on - strandat 182.797 kb on - strandat 182.813 kb on + strandat 182.813 kb on + strandat 182.813 kb on + strandat 182.813 kb on + strandat 182.814 kb on - strandat 183.079 kb on - strand, within GFF3928at 183.117 kb on + strand, within GFF3928at 183.117 kb on + strand, within GFF3928at 183.219 kb on + strand, within GFF3928at 183.396 kb on + strand, within GFF3928at 183.396 kb on + strand, within GFF3928at 183.397 kb on - strand, within GFF3928at 183.397 kb on - strand, within GFF3928at 183.397 kb on - strand, within GFF3928at 183.426 kb on + strand, within GFF3928at 183.426 kb on + strand, within GFF3928at 183.426 kb on + strand, within GFF3928at 183.426 kb on + strand, within GFF3928at 183.426 kb on + strand, within GFF3928at 183.426 kb on + strand, within GFF3928at 183.427 kb on - strand, within GFF3928at 183.427 kb on - strand, within GFF3928at 183.427 kb on - strand, within GFF3928at 183.427 kb on - strand, within GFF3928at 183.480 kb on + strand, within GFF3928at 183.480 kb on + strand, within GFF3928at 183.480 kb on + strand, within GFF3928at 183.481 kb on - strand, within GFF3928at 183.492 kb on + strand, within GFF3928at 183.492 kb on + strand, within GFF3928at 183.493 kb on - strand, within GFF3928at 183.493 kb on - strand, within GFF3928at 183.493 kb on - strand, within GFF3928at 183.630 kb on + strand, within GFF3928

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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181,399 - GFF3926 0.21 +1.4
181,399 - GFF3926 0.21 +0.8
181,441 - GFF3926 0.25 -0.4
181,461 + GFF3926 0.27 -2.3
181,462 - GFF3926 0.28 -0.8
181,462 - GFF3926 0.28 +0.7
181,462 - GFF3926 0.28 -0.5
181,476 + GFF3926 0.29 +0.2
181,476 + GFF3926 0.29 +0.8
181,506 + GFF3926 0.32 -0.5
181,704 + GFF3926 0.54 -0.6
181,758 + GFF3926 0.60 -0.6
181,929 + GFF3926 0.78 +0.3
181,929 + GFF3926 0.78 -0.2
181,930 - GFF3926 0.78 -0.3
181,930 - GFF3926 0.78 -0.1
181,940 - GFF3926 0.79 +0.0
181,941 + GFF3926 0.80 -0.2
181,941 + GFF3926 0.80 -1.6
181,941 + GFF3926 0.80 -1.1
181,941 + GFF3926 0.80 +0.5
181,941 + GFF3926 0.80 +0.8
181,941 + GFF3926 0.80 +0.2
181,941 + GFF3926 0.80 +0.3
181,941 + GFF3926 0.80 -0.7
181,941 + GFF3926 0.80 +0.3
181,941 + GFF3926 0.80 +0.6
181,942 - GFF3926 0.80 -0.6
181,942 - GFF3926 0.80 -0.6
182,097 + -0.5
182,097 + +0.0
182,098 - -0.4
182,098 - +0.1
182,098 - -0.4
182,109 + +0.3
182,109 + +0.3
182,110 - +0.1
182,110 - +1.4
182,110 - -0.0
182,110 - +0.5
182,110 - -1.0
182,169 + -0.7
182,169 + -0.8
182,169 + -0.6
182,180 + -0.2
182,181 - -0.9
182,181 - -0.2
182,221 + -0.3
182,319 + GFF3927 0.19 -0.5
182,538 + GFF3927 0.57 -1.2
182,778 + -0.8
182,778 + -0.1
182,779 - +1.8
182,779 - -0.6
182,779 - -0.2
182,779 - +1.4
182,779 - -0.1
182,796 + -0.0
182,796 + +0.7
182,797 - +0.6
182,797 - -0.4
182,797 - +0.6
182,797 - -0.3
182,797 - +0.6
182,797 - -1.7
182,813 + -0.6
182,813 + -0.5
182,813 + +0.9
182,813 + +0.4
182,814 - -0.8
183,079 - GFF3928 0.21 +0.5
183,117 + GFF3928 0.26 -1.3
183,117 + GFF3928 0.26 -0.0
183,219 + GFF3928 0.38 -0.0
183,396 + GFF3928 0.58 +0.5
183,396 + GFF3928 0.58 +0.4
183,397 - GFF3928 0.58 -0.8
183,397 - GFF3928 0.58 +0.1
183,397 - GFF3928 0.58 +1.4
183,426 + GFF3928 0.61 -0.8
183,426 + GFF3928 0.61 +1.4
183,426 + GFF3928 0.61 -0.3
183,426 + GFF3928 0.61 -0.6
183,426 + GFF3928 0.61 -1.0
183,426 + GFF3928 0.61 +0.4
183,427 - GFF3928 0.61 +0.4
183,427 - GFF3928 0.61 -0.9
183,427 - GFF3928 0.61 -0.8
183,427 - GFF3928 0.61 +0.9
183,480 + GFF3928 0.68 -0.5
183,480 + GFF3928 0.68 -0.5
183,480 + GFF3928 0.68 -2.6
183,481 - GFF3928 0.68 -0.6
183,492 + GFF3928 0.69 -0.8
183,492 + GFF3928 0.69 +0.0
183,493 - GFF3928 0.69 -1.0
183,493 - GFF3928 0.69 -0.4
183,493 - GFF3928 0.69 -2.4
183,630 + GFF3928 0.85 -0.6

Or see this region's nucleotide sequence