Strain Fitness in Pseudomonas sp. DMC3 around GFF3923

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3921 and GFF3922 are separated by 35 nucleotidesGFF3922 and GFF3923 are separated by 310 nucleotidesGFF3923 and GFF3924 are separated by 52 nucleotides GFF3921 - hypothetical protein, at 175,711 to 176,190 GFF3921 GFF3922 - DNA polymerase III PolC-type, at 176,226 to 176,831 GFF3922 GFF3923 - putative inner membrane transporter YedA, at 177,142 to 178,077 GFF3923 GFF3924 - ATP-dependent RNA helicase RhlE, at 178,130 to 179,470 GFF3924 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1 2at 176.153 kb on - strandat 176.188 kb on + strandat 176.189 kb on - strandat 176.208 kb on + strandat 176.474 kb on + strand, within GFF3922at 176.475 kb on - strand, within GFF3922at 177.074 kb on + strandat 177.074 kb on + strandat 177.080 kb on - strandat 177.101 kb on + strandat 177.101 kb on + strandat 177.101 kb on + strandat 177.102 kb on - strandat 177.196 kb on + strandat 177.196 kb on + strandat 177.196 kb on + strandat 177.196 kb on + strandat 177.197 kb on - strandat 177.197 kb on - strandat 177.197 kb on - strandat 177.197 kb on - strandat 177.197 kb on - strandat 177.217 kb on + strandat 177.218 kb on - strandat 177.301 kb on + strand, within GFF3923at 177.301 kb on + strand, within GFF3923at 177.301 kb on + strand, within GFF3923at 177.301 kb on + strand, within GFF3923at 177.301 kb on + strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.302 kb on - strand, within GFF3923at 177.658 kb on + strand, within GFF3923at 177.658 kb on + strand, within GFF3923at 177.658 kb on + strand, within GFF3923at 177.659 kb on - strand, within GFF3923at 177.659 kb on - strand, within GFF3923at 177.659 kb on - strand, within GFF3923at 177.796 kb on + strand, within GFF3923at 177.835 kb on + strand, within GFF3923at 177.836 kb on - strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.841 kb on + strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.842 kb on - strand, within GFF3923at 177.880 kb on + strand, within GFF3923at 177.880 kb on + strand, within GFF3923at 177.880 kb on + strand, within GFF3923at 177.880 kb on + strand, within GFF3923at 177.880 kb on + strand, within GFF3923at 177.880 kb on + strand, within GFF3923at 177.880 kb on + strand, within GFF3923at 177.880 kb on + strand, within GFF3923at 177.881 kb on - strand, within GFF3923at 177.881 kb on - strand, within GFF3923at 177.886 kb on + strand, within GFF3923at 177.886 kb on + strand, within GFF3923at 177.886 kb on + strand, within GFF3923at 177.886 kb on + strand, within GFF3923at 177.886 kb on + strand, within GFF3923at 177.887 kb on - strand, within GFF3923at 177.887 kb on - strand, within GFF3923at 178.076 kb on - strandat 178.076 kb on - strandat 178.076 kb on - strandat 178.076 kb on - strandat 178.080 kb on + strandat 178.123 kb on + strandat 178.123 kb on + strandat 178.123 kb on + strandat 178.418 kb on + strand, within GFF3924at 178.441 kb on + strand, within GFF3924at 178.441 kb on + strand, within GFF3924at 178.442 kb on - strand, within GFF3924at 178.442 kb on - strand, within GFF3924at 178.442 kb on - strand, within GFF3924at 178.442 kb on - strand, within GFF3924at 178.445 kb on + strand, within GFF3924at 178.445 kb on + strand, within GFF3924at 178.445 kb on + strand, within GFF3924at 178.445 kb on + strand, within GFF3924at 178.445 kb on + strand, within GFF3924at 178.446 kb on - strand, within GFF3924at 178.446 kb on - strand, within GFF3924at 178.446 kb on - strand, within GFF3924at 178.446 kb on - strand, within GFF3924at 178.454 kb on + strand, within GFF3924at 178.455 kb on - strand, within GFF3924at 178.806 kb on + strand, within GFF3924at 178.806 kb on + strand, within GFF3924at 178.807 kb on - strand, within GFF3924

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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176,153 - +0.4
176,188 + -0.8
176,189 - -0.7
176,208 + -0.2
176,474 + GFF3922 0.41 -0.6
176,475 - GFF3922 0.41 +0.3
177,074 + -0.3
177,074 + -0.6
177,080 - -0.1
177,101 + +0.2
177,101 + -0.1
177,101 + -0.1
177,102 - +0.4
177,196 + +0.3
177,196 + -0.7
177,196 + -0.2
177,196 + -0.0
177,197 - +0.3
177,197 - -0.6
177,197 - +1.4
177,197 - +0.3
177,197 - +0.3
177,217 + -0.8
177,218 - +0.1
177,301 + GFF3923 0.17 -0.1
177,301 + GFF3923 0.17 +1.1
177,301 + GFF3923 0.17 +0.4
177,301 + GFF3923 0.17 +0.2
177,301 + GFF3923 0.17 +0.2
177,302 - GFF3923 0.17 -0.8
177,302 - GFF3923 0.17 +0.8
177,302 - GFF3923 0.17 -0.7
177,302 - GFF3923 0.17 +0.1
177,302 - GFF3923 0.17 +0.4
177,302 - GFF3923 0.17 -1.0
177,302 - GFF3923 0.17 -0.6
177,658 + GFF3923 0.55 +0.1
177,658 + GFF3923 0.55 -0.2
177,658 + GFF3923 0.55 -0.6
177,659 - GFF3923 0.55 +0.7
177,659 - GFF3923 0.55 -1.3
177,659 - GFF3923 0.55 -1.8
177,796 + GFF3923 0.70 -0.6
177,835 + GFF3923 0.74 -0.3
177,836 - GFF3923 0.74 +1.0
177,841 + GFF3923 0.75 -0.6
177,841 + GFF3923 0.75 -1.6
177,841 + GFF3923 0.75 -0.6
177,841 + GFF3923 0.75 +0.5
177,841 + GFF3923 0.75 -0.4
177,841 + GFF3923 0.75 -0.7
177,841 + GFF3923 0.75 -0.0
177,841 + GFF3923 0.75 -0.5
177,841 + GFF3923 0.75 -0.9
177,841 + GFF3923 0.75 -0.8
177,841 + GFF3923 0.75 -0.3
177,841 + GFF3923 0.75 -0.0
177,841 + GFF3923 0.75 +0.2
177,841 + GFF3923 0.75 +0.2
177,842 - GFF3923 0.75 -0.0
177,842 - GFF3923 0.75 -0.3
177,842 - GFF3923 0.75 -1.8
177,842 - GFF3923 0.75 -2.0
177,842 - GFF3923 0.75 +0.4
177,842 - GFF3923 0.75 +0.0
177,842 - GFF3923 0.75 -1.7
177,842 - GFF3923 0.75 -0.2
177,842 - GFF3923 0.75 -0.1
177,842 - GFF3923 0.75 -1.2
177,842 - GFF3923 0.75 -0.2
177,842 - GFF3923 0.75 +0.4
177,880 + GFF3923 0.79 +0.2
177,880 + GFF3923 0.79 -2.6
177,880 + GFF3923 0.79 +0.7
177,880 + GFF3923 0.79 +0.5
177,880 + GFF3923 0.79 -0.2
177,880 + GFF3923 0.79 -1.1
177,880 + GFF3923 0.79 -1.0
177,880 + GFF3923 0.79 +1.1
177,881 - GFF3923 0.79 -0.4
177,881 - GFF3923 0.79 -0.3
177,886 + GFF3923 0.79 -0.1
177,886 + GFF3923 0.79 -0.6
177,886 + GFF3923 0.79 +0.4
177,886 + GFF3923 0.79 -0.8
177,886 + GFF3923 0.79 -0.2
177,887 - GFF3923 0.80 -0.4
177,887 - GFF3923 0.80 +1.5
178,076 - +0.5
178,076 - -0.0
178,076 - +0.4
178,076 - +1.8
178,080 + +1.1
178,123 + +1.8
178,123 + -0.9
178,123 + +0.3
178,418 + GFF3924 0.21 -0.0
178,441 + GFF3924 0.23 -0.8
178,441 + GFF3924 0.23 -0.5
178,442 - GFF3924 0.23 +0.5
178,442 - GFF3924 0.23 -0.7
178,442 - GFF3924 0.23 -1.6
178,442 - GFF3924 0.23 +0.8
178,445 + GFF3924 0.23 -0.7
178,445 + GFF3924 0.23 -0.4
178,445 + GFF3924 0.23 -0.1
178,445 + GFF3924 0.23 -0.6
178,445 + GFF3924 0.23 -0.8
178,446 - GFF3924 0.24 -0.6
178,446 - GFF3924 0.24 +0.3
178,446 - GFF3924 0.24 -0.1
178,446 - GFF3924 0.24 +0.2
178,454 + GFF3924 0.24 -0.6
178,455 - GFF3924 0.24 -0.6
178,806 + GFF3924 0.50 +0.5
178,806 + GFF3924 0.50 +0.3
178,807 - GFF3924 0.50 +0.2

Or see this region's nucleotide sequence