Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3719 and GFF3720 overlap by 4 nucleotides GFF3720 and GFF3721 overlap by 4 nucleotides GFF3721 and GFF3722 overlap by 1 nucleotides GFF3722 and GFF3723 are separated by 214 nucleotides
GFF3719 - hypothetical protein, at 330,681 to 330,959
GFF3719
GFF3720 - hypothetical protein, at 330,956 to 331,918
GFF3720
GFF3721 - Nitrate import ATP-binding protein NrtD, at 331,915 to 332,763
GFF3721
GFF3722 - Putative aliphatic sulfonates transport permease protein SsuC, at 332,763 to 333,542
GFF3722
GFF3723 - hypothetical protein, at 333,757 to 335,160
GFF3723
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1 at 331.320 kb on - strand, within GFF3720 at 331.320 kb on - strand, within GFF3720 at 331.320 kb on - strand, within GFF3720 at 331.320 kb on - strand, within GFF3720 at 331.918 kb on + strand at 332.122 kb on + strand, within GFF3721 at 332.122 kb on + strand, within GFF3721 at 332.881 kb on + strand, within GFF3722 at 332.881 kb on + strand, within GFF3722 at 332.896 kb on + strand, within GFF3722 at 332.897 kb on - strand, within GFF3722 at 332.897 kb on - strand, within GFF3722 at 332.911 kb on + strand, within GFF3722 at 332.911 kb on + strand, within GFF3722 at 332.911 kb on + strand, within GFF3722 at 332.912 kb on - strand, within GFF3722 at 332.912 kb on - strand, within GFF3722 at 332.912 kb on - strand, within GFF3722 at 333.027 kb on + strand, within GFF3722 at 333.027 kb on + strand, within GFF3722 at 333.325 kb on + strand, within GFF3722 at 333.672 kb on - strand at 333.672 kb on - strand at 333.672 kb on - strand at 333.686 kb on + strand at 333.686 kb on + strand at 333.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 331,320 - GFF3720 0.38 -2.4 331,320 - GFF3720 0.38 -0.3 331,320 - GFF3720 0.38 -0.1 331,320 - GFF3720 0.38 +0.1 331,918 + -0.9 332,122 + GFF3721 0.24 -0.1 332,122 + GFF3721 0.24 +1.0 332,881 + GFF3722 0.15 -1.1 332,881 + GFF3722 0.15 -0.4 332,896 + GFF3722 0.17 -0.1 332,897 - GFF3722 0.17 -0.6 332,897 - GFF3722 0.17 -1.7 332,911 + GFF3722 0.19 -0.3 332,911 + GFF3722 0.19 -0.4 332,911 + GFF3722 0.19 -0.1 332,912 - GFF3722 0.19 -1.3 332,912 - GFF3722 0.19 -1.5 332,912 - GFF3722 0.19 -0.3 333,027 + GFF3722 0.34 -0.7 333,027 + GFF3722 0.34 -1.1 333,325 + GFF3722 0.72 +0.3 333,672 - +0.1 333,672 - +1.3 333,672 - +0.9 333,686 + -0.4 333,686 + -0.7 333,687 - +0.7
Or see this region's nucleotide sequence