Strain Fitness in Pseudomonas sp. DMC3 around GFF3712

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3711 and GFF3712 are separated by 123 nucleotidesGFF3712 and GFF3713 are separated by 38 nucleotides GFF3711 - Sensor histidine kinase RcsC, at 316,703 to 318,646 GFF3711 GFF3712 - UvrABC system protein A, at 318,770 to 321,403 GFF3712 GFF3713 - Sensor histidine kinase RcsC, at 321,442 to 323,553 GFF3713 Position (kb) 318 319 320 321 322Strain fitness (log2 ratio) -2 -1 0 1 2at 317.950 kb on + strand, within GFF3711at 317.962 kb on + strand, within GFF3711at 317.962 kb on + strand, within GFF3711at 317.963 kb on - strand, within GFF3711at 317.963 kb on - strand, within GFF3711at 317.963 kb on - strand, within GFF3711at 317.966 kb on + strand, within GFF3711at 317.967 kb on - strand, within GFF3711at 318.011 kb on + strand, within GFF3711at 318.011 kb on + strand, within GFF3711at 318.772 kb on - strandat 319.038 kb on + strand, within GFF3712at 319.038 kb on + strand, within GFF3712at 319.038 kb on + strand, within GFF3712at 319.038 kb on + strand, within GFF3712at 319.038 kb on + strand, within GFF3712at 319.038 kb on + strand, within GFF3712at 319.038 kb on + strand, within GFF3712at 319.039 kb on - strand, within GFF3712at 319.039 kb on - strand, within GFF3712at 319.039 kb on - strand, within GFF3712at 319.039 kb on - strand, within GFF3712at 319.039 kb on - strand, within GFF3712at 319.039 kb on - strand, within GFF3712at 319.039 kb on - strand, within GFF3712at 319.072 kb on - strand, within GFF3712at 319.140 kb on + strand, within GFF3712at 319.141 kb on - strand, within GFF3712at 319.141 kb on - strand, within GFF3712at 319.286 kb on - strand, within GFF3712at 319.288 kb on - strand, within GFF3712at 319.288 kb on - strand, within GFF3712at 319.288 kb on - strand, within GFF3712at 319.288 kb on - strand, within GFF3712at 319.320 kb on + strand, within GFF3712at 319.321 kb on - strand, within GFF3712at 319.376 kb on - strand, within GFF3712at 319.376 kb on - strand, within GFF3712at 319.376 kb on - strand, within GFF3712at 319.765 kb on + strand, within GFF3712at 319.775 kb on - strand, within GFF3712at 319.775 kb on - strand, within GFF3712at 319.857 kb on + strand, within GFF3712at 319.857 kb on + strand, within GFF3712at 319.883 kb on - strand, within GFF3712at 319.911 kb on + strand, within GFF3712at 320.100 kb on + strand, within GFF3712at 320.100 kb on + strand, within GFF3712at 320.285 kb on + strand, within GFF3712at 320.415 kb on + strand, within GFF3712at 320.416 kb on - strand, within GFF3712at 320.429 kb on + strand, within GFF3712at 320.430 kb on - strand, within GFF3712at 320.628 kb on + strand, within GFF3712at 320.658 kb on + strand, within GFF3712at 320.659 kb on - strand, within GFF3712at 320.718 kb on + strand, within GFF3712at 320.928 kb on + strand, within GFF3712at 320.928 kb on + strand, within GFF3712at 320.929 kb on - strand, within GFF3712at 320.997 kb on + strand, within GFF3712at 320.997 kb on + strand, within GFF3712at 320.998 kb on - strand, within GFF3712at 320.998 kb on - strand, within GFF3712at 321.040 kb on - strand, within GFF3712at 321.237 kb on + strandat 321.237 kb on + strandat 321.238 kb on - strandat 321.337 kb on + strandat 321.338 kb on - strandat 321.338 kb on - strandat 321.338 kb on - strandat 321.476 kb on - strandat 321.476 kb on - strandat 321.513 kb on + strandat 321.875 kb on + strand, within GFF3713at 321.876 kb on - strand, within GFF3713at 322.076 kb on + strand, within GFF3713at 322.077 kb on - strand, within GFF3713at 322.077 kb on - strand, within GFF3713at 322.077 kb on - strand, within GFF3713at 322.233 kb on + strand, within GFF3713at 322.233 kb on + strand, within GFF3713at 322.234 kb on - strand, within GFF3713at 322.234 kb on - strand, within GFF3713

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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317,950 + GFF3711 0.64 -1.0
317,962 + GFF3711 0.65 +0.7
317,962 + GFF3711 0.65 -0.3
317,963 - GFF3711 0.65 -0.8
317,963 - GFF3711 0.65 -0.3
317,963 - GFF3711 0.65 +0.0
317,966 + GFF3711 0.65 -0.3
317,967 - GFF3711 0.65 -0.5
318,011 + GFF3711 0.67 -0.5
318,011 + GFF3711 0.67 +1.1
318,772 - -1.3
319,038 + GFF3712 0.10 -0.1
319,038 + GFF3712 0.10 -0.0
319,038 + GFF3712 0.10 +0.1
319,038 + GFF3712 0.10 -1.2
319,038 + GFF3712 0.10 -0.8
319,038 + GFF3712 0.10 -0.6
319,038 + GFF3712 0.10 +0.3
319,039 - GFF3712 0.10 -1.9
319,039 - GFF3712 0.10 -0.3
319,039 - GFF3712 0.10 -1.2
319,039 - GFF3712 0.10 -0.4
319,039 - GFF3712 0.10 +0.2
319,039 - GFF3712 0.10 -0.3
319,039 - GFF3712 0.10 +0.3
319,072 - GFF3712 0.11 +0.4
319,140 + GFF3712 0.14 -0.8
319,141 - GFF3712 0.14 +0.0
319,141 - GFF3712 0.14 -0.5
319,286 - GFF3712 0.20 -1.8
319,288 - GFF3712 0.20 -0.4
319,288 - GFF3712 0.20 +0.2
319,288 - GFF3712 0.20 -1.3
319,288 - GFF3712 0.20 -0.1
319,320 + GFF3712 0.21 -1.0
319,321 - GFF3712 0.21 +0.7
319,376 - GFF3712 0.23 +0.3
319,376 - GFF3712 0.23 +0.2
319,376 - GFF3712 0.23 -0.5
319,765 + GFF3712 0.38 +1.7
319,775 - GFF3712 0.38 -1.5
319,775 - GFF3712 0.38 +0.2
319,857 + GFF3712 0.41 +0.7
319,857 + GFF3712 0.41 +0.0
319,883 - GFF3712 0.42 +0.0
319,911 + GFF3712 0.43 -0.4
320,100 + GFF3712 0.50 +0.3
320,100 + GFF3712 0.50 +2.0
320,285 + GFF3712 0.58 +0.3
320,415 + GFF3712 0.62 +0.7
320,416 - GFF3712 0.62 -0.0
320,429 + GFF3712 0.63 +0.2
320,430 - GFF3712 0.63 +0.2
320,628 + GFF3712 0.71 +0.3
320,658 + GFF3712 0.72 +0.4
320,659 - GFF3712 0.72 +0.0
320,718 + GFF3712 0.74 +0.6
320,928 + GFF3712 0.82 +0.1
320,928 + GFF3712 0.82 -2.4
320,929 - GFF3712 0.82 +0.1
320,997 + GFF3712 0.85 -1.2
320,997 + GFF3712 0.85 -0.7
320,998 - GFF3712 0.85 -0.3
320,998 - GFF3712 0.85 -0.3
321,040 - GFF3712 0.86 -1.1
321,237 + +0.1
321,237 + +0.3
321,238 - -1.0
321,337 + -1.7
321,338 - +0.5
321,338 - -0.2
321,338 - -0.7
321,476 - +1.1
321,476 - -1.4
321,513 + -2.3
321,875 + GFF3713 0.21 -0.3
321,876 - GFF3713 0.21 +0.2
322,076 + GFF3713 0.30 +0.5
322,077 - GFF3713 0.30 -1.7
322,077 - GFF3713 0.30 +0.0
322,077 - GFF3713 0.30 -0.3
322,233 + GFF3713 0.37 +0.3
322,233 + GFF3713 0.37 -0.4
322,234 - GFF3713 0.38 +0.2
322,234 - GFF3713 0.38 +0.7

Or see this region's nucleotide sequence