Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3628 and GFF3629 overlap by 4 nucleotides GFF3629 and GFF3630 are separated by 71 nucleotides
GFF3628 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 214,998 to 215,768
GFF3628
GFF3629 - Putative protein-methionine-sulfoxide reductase subunit YedZ1, at 215,765 to 216,385
GFF3629
GFF3630 - hypothetical protein, at 216,457 to 217,065
GFF3630
Position (kb) 214
215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 214.014 kb on + strand at 214.014 kb on + strand at 214.014 kb on + strand at 214.015 kb on - strand at 214.015 kb on - strand at 214.031 kb on + strand at 214.031 kb on + strand at 214.031 kb on + strand at 214.032 kb on - strand at 214.065 kb on - strand at 214.083 kb on - strand at 214.091 kb on - strand at 214.103 kb on + strand at 214.103 kb on + strand at 214.103 kb on + strand at 214.104 kb on - strand at 214.104 kb on - strand at 214.104 kb on - strand at 214.164 kb on + strand at 214.187 kb on + strand at 214.188 kb on - strand at 214.188 kb on - strand at 214.190 kb on - strand at 214.250 kb on + strand at 214.251 kb on - strand at 214.251 kb on - strand at 214.267 kb on - strand at 214.283 kb on + strand at 214.284 kb on - strand at 214.285 kb on + strand at 214.285 kb on + strand at 214.285 kb on + strand at 214.286 kb on - strand at 214.286 kb on - strand at 214.286 kb on - strand at 214.335 kb on + strand at 214.335 kb on + strand at 214.336 kb on - strand at 214.342 kb on + strand at 214.342 kb on + strand at 214.343 kb on - strand at 214.343 kb on - strand at 214.360 kb on + strand at 214.361 kb on - strand at 214.361 kb on - strand at 214.361 kb on - strand at 214.361 kb on - strand at 214.361 kb on - strand at 214.380 kb on + strand at 214.381 kb on - strand at 214.401 kb on + strand at 214.402 kb on - strand at 214.433 kb on - strand at 214.451 kb on + strand at 214.451 kb on + strand at 214.452 kb on - strand at 214.467 kb on + strand at 214.467 kb on + strand at 214.468 kb on - strand at 214.470 kb on + strand at 214.470 kb on + strand at 214.470 kb on + strand at 214.470 kb on + strand at 214.471 kb on - strand at 214.471 kb on - strand at 214.471 kb on - strand at 214.515 kb on + strand at 214.515 kb on + strand at 214.515 kb on + strand at 214.522 kb on + strand at 214.592 kb on + strand at 214.592 kb on + strand at 214.592 kb on + strand at 214.598 kb on - strand at 214.598 kb on - strand at 214.651 kb on + strand at 214.652 kb on - strand at 214.652 kb on - strand at 214.652 kb on - strand at 214.652 kb on - strand at 214.717 kb on + strand at 214.718 kb on - strand at 214.718 kb on - strand at 214.741 kb on + strand at 214.741 kb on + strand at 214.741 kb on + strand at 214.741 kb on + strand at 214.742 kb on - strand at 214.742 kb on - strand at 214.742 kb on - strand at 214.796 kb on + strand at 214.796 kb on + strand at 214.797 kb on - strand at 214.797 kb on - strand at 214.912 kb on + strand at 214.934 kb on + strand at 214.935 kb on - strand at 214.935 kb on - strand at 215.020 kb on + strand at 215.020 kb on + strand at 215.021 kb on - strand at 215.164 kb on + strand, within GFF3628 at 215.221 kb on + strand, within GFF3628 at 215.221 kb on + strand, within GFF3628 at 215.221 kb on + strand, within GFF3628 at 215.222 kb on - strand, within GFF3628 at 215.224 kb on + strand, within GFF3628 at 215.301 kb on + strand, within GFF3628 at 215.301 kb on + strand, within GFF3628 at 215.302 kb on - strand, within GFF3628 at 215.440 kb on + strand, within GFF3628 at 215.440 kb on + strand, within GFF3628 at 215.440 kb on + strand, within GFF3628 at 215.454 kb on + strand, within GFF3628 at 215.455 kb on - strand, within GFF3628 at 215.479 kb on + strand, within GFF3628 at 215.479 kb on + strand, within GFF3628 at 215.479 kb on + strand, within GFF3628 at 215.756 kb on + strand at 215.785 kb on + strand at 215.900 kb on + strand, within GFF3629 at 215.900 kb on + strand, within GFF3629 at 215.901 kb on - strand, within GFF3629 at 215.904 kb on + strand, within GFF3629 at 215.920 kb on - strand, within GFF3629 at 215.930 kb on + strand, within GFF3629 at 215.973 kb on - strand, within GFF3629 at 215.973 kb on - strand, within GFF3629 at 215.993 kb on + strand, within GFF3629 at 215.993 kb on + strand, within GFF3629 at 215.994 kb on - strand, within GFF3629 at 215.994 kb on - strand, within GFF3629 at 216.018 kb on + strand, within GFF3629 at 216.018 kb on + strand, within GFF3629 at 216.018 kb on + strand, within GFF3629 at 216.018 kb on + strand, within GFF3629 at 216.019 kb on - strand, within GFF3629 at 216.032 kb on + strand, within GFF3629 at 216.040 kb on + strand, within GFF3629 at 216.042 kb on + strand, within GFF3629 at 216.042 kb on + strand, within GFF3629 at 216.042 kb on + strand, within GFF3629 at 216.042 kb on + strand, within GFF3629 at 216.042 kb on + strand, within GFF3629 at 216.042 kb on + strand, within GFF3629 at 216.042 kb on + strand, within GFF3629 at 216.043 kb on - strand, within GFF3629 at 216.043 kb on - strand, within GFF3629 at 216.043 kb on - strand, within GFF3629 at 216.043 kb on - strand, within GFF3629 at 216.157 kb on - strand, within GFF3629 at 216.165 kb on + strand, within GFF3629 at 216.165 kb on + strand, within GFF3629 at 216.165 kb on + strand, within GFF3629 at 216.165 kb on + strand, within GFF3629 at 216.165 kb on + strand, within GFF3629 at 216.165 kb on + strand, within GFF3629 at 216.165 kb on + strand, within GFF3629 at 216.166 kb on - strand, within GFF3629 at 216.166 kb on - strand, within GFF3629 at 216.166 kb on - strand, within GFF3629 at 216.166 kb on - strand, within GFF3629 at 216.166 kb on - strand, within GFF3629 at 216.166 kb on - strand, within GFF3629 at 216.166 kb on - strand, within GFF3629 at 216.288 kb on + strand, within GFF3629 at 216.289 kb on - strand, within GFF3629 at 216.289 kb on - strand, within GFF3629 at 216.289 kb on - strand, within GFF3629 at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.458 kb on + strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.459 kb on - strand at 216.578 kb on + strand, within GFF3630 at 216.578 kb on + strand, within GFF3630 at 216.579 kb on - strand, within GFF3630 at 216.585 kb on + strand, within GFF3630 at 216.725 kb on + strand, within GFF3630
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 214,014 + -1.7 214,014 + -0.3 214,014 + +0.2 214,015 - -0.3 214,015 - -3.1 214,031 + +0.0 214,031 + -2.6 214,031 + -0.5 214,032 - -0.1 214,065 - -1.3 214,083 - +0.3 214,091 - +0.1 214,103 + -1.5 214,103 + +0.9 214,103 + -0.4 214,104 - +0.7 214,104 - -0.6 214,104 - -1.0 214,164 + +0.1 214,187 + +0.3 214,188 - -0.6 214,188 - -0.0 214,190 - +0.6 214,250 + +0.5 214,251 - -1.6 214,251 - -0.2 214,267 - -0.4 214,283 + +0.0 214,284 - -0.6 214,285 + -0.1 214,285 + -1.7 214,285 + +0.7 214,286 - -0.8 214,286 - -0.4 214,286 - -0.7 214,335 + +0.2 214,335 + +0.1 214,336 - -0.1 214,342 + -0.8 214,342 + -0.0 214,343 - +0.3 214,343 - +0.1 214,360 + -0.5 214,361 - +0.7 214,361 - +0.0 214,361 - +0.1 214,361 - -0.3 214,361 - -0.8 214,380 + -0.5 214,381 - -0.1 214,401 + -0.6 214,402 - +1.3 214,433 - -0.4 214,451 + -0.5 214,451 + -0.5 214,452 - +0.9 214,467 + -1.0 214,467 + +1.2 214,468 - +0.9 214,470 + -0.3 214,470 + -0.3 214,470 + -0.5 214,470 + -0.2 214,471 - +1.7 214,471 - +0.2 214,471 - -0.7 214,515 + -0.3 214,515 + -0.8 214,515 + -0.9 214,522 + +1.3 214,592 + -1.0 214,592 + -0.6 214,592 + -0.3 214,598 - -0.3 214,598 - -0.5 214,651 + -0.4 214,652 - +1.3 214,652 - +0.4 214,652 - +0.3 214,652 - +0.8 214,717 + -0.3 214,718 - +1.0 214,718 - +1.3 214,741 + +0.2 214,741 + -0.4 214,741 + -0.9 214,741 + +0.4 214,742 - -0.8 214,742 - -1.3 214,742 - -0.5 214,796 + +0.4 214,796 + +0.6 214,797 - +1.0 214,797 - +0.4 214,912 + +0.4 214,934 + +0.3 214,935 - +0.7 214,935 - -0.3 215,020 + +0.7 215,020 + -0.2 215,021 - +0.8 215,164 + GFF3628 0.22 -0.7 215,221 + GFF3628 0.29 -0.3 215,221 + GFF3628 0.29 -0.1 215,221 + GFF3628 0.29 +0.2 215,222 - GFF3628 0.29 -0.2 215,224 + GFF3628 0.29 -1.4 215,301 + GFF3628 0.39 -0.4 215,301 + GFF3628 0.39 -0.9 215,302 - GFF3628 0.39 -2.1 215,440 + GFF3628 0.57 +0.0 215,440 + GFF3628 0.57 +0.5 215,440 + GFF3628 0.57 +0.1 215,454 + GFF3628 0.59 -0.6 215,455 - GFF3628 0.59 -0.1 215,479 + GFF3628 0.62 -0.4 215,479 + GFF3628 0.62 -0.5 215,479 + GFF3628 0.62 -0.3 215,756 + +0.9 215,785 + -0.3 215,900 + GFF3629 0.22 -2.1 215,900 + GFF3629 0.22 -0.3 215,901 - GFF3629 0.22 -0.1 215,904 + GFF3629 0.22 +0.4 215,920 - GFF3629 0.25 +0.3 215,930 + GFF3629 0.27 +0.1 215,973 - GFF3629 0.33 +1.3 215,973 - GFF3629 0.33 -1.0 215,993 + GFF3629 0.37 +0.4 215,993 + GFF3629 0.37 -0.4 215,994 - GFF3629 0.37 -0.5 215,994 - GFF3629 0.37 -0.3 216,018 + GFF3629 0.41 -0.5 216,018 + GFF3629 0.41 -0.7 216,018 + GFF3629 0.41 +0.5 216,018 + GFF3629 0.41 -0.3 216,019 - GFF3629 0.41 -1.5 216,032 + GFF3629 0.43 +0.5 216,040 + GFF3629 0.44 -0.7 216,042 + GFF3629 0.45 +0.7 216,042 + GFF3629 0.45 +0.3 216,042 + GFF3629 0.45 +0.1 216,042 + GFF3629 0.45 +0.1 216,042 + GFF3629 0.45 -0.2 216,042 + GFF3629 0.45 -1.3 216,042 + GFF3629 0.45 +0.3 216,043 - GFF3629 0.45 +0.8 216,043 - GFF3629 0.45 +0.1 216,043 - GFF3629 0.45 +0.7 216,043 - GFF3629 0.45 -1.3 216,157 - GFF3629 0.63 -0.4 216,165 + GFF3629 0.64 +0.3 216,165 + GFF3629 0.64 +0.1 216,165 + GFF3629 0.64 -0.7 216,165 + GFF3629 0.64 -0.0 216,165 + GFF3629 0.64 +0.6 216,165 + GFF3629 0.64 +0.3 216,165 + GFF3629 0.64 -0.5 216,166 - GFF3629 0.65 -0.6 216,166 - GFF3629 0.65 +0.3 216,166 - GFF3629 0.65 -2.0 216,166 - GFF3629 0.65 -0.2 216,166 - GFF3629 0.65 +0.9 216,166 - GFF3629 0.65 +0.1 216,166 - GFF3629 0.65 -0.3 216,288 + GFF3629 0.84 -0.3 216,289 - GFF3629 0.84 +0.8 216,289 - GFF3629 0.84 +0.1 216,289 - GFF3629 0.84 -0.3 216,458 + +0.6 216,458 + -0.6 216,458 + -0.7 216,458 + -1.0 216,458 + +0.9 216,458 + +0.2 216,459 - -0.6 216,459 - -1.7 216,459 - -0.8 216,459 - -0.7 216,578 + GFF3630 0.20 +0.1 216,578 + GFF3630 0.20 +0.2 216,579 - GFF3630 0.20 -0.4 216,585 + GFF3630 0.21 +0.3 216,725 + GFF3630 0.44 +0.7
Or see this region's nucleotide sequence