Strain Fitness in Pseudomonas sp. DMC3 around GFF3588

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3587 and GFF3588 are separated by 2 nucleotidesGFF3588 and GFF3589 are separated by 1 nucleotidesGFF3589 and GFF3590 overlap by 43 nucleotides GFF3587 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 175,762 to 177,735 GFF3587 GFF3588 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 177,738 to 178,352 GFF3588 GFF3589 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 178,354 to 178,692 GFF3589 GFF3590 - Protoheme IX farnesyltransferase, at 178,650 to 179,675 GFF3590 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1at 176.872 kb on + strand, within GFF3587at 176.872 kb on + strand, within GFF3587at 176.873 kb on - strand, within GFF3587at 176.938 kb on - strand, within GFF3587at 177.024 kb on + strand, within GFF3587at 177.073 kb on + strand, within GFF3587at 177.074 kb on - strand, within GFF3587at 177.155 kb on - strand, within GFF3587at 177.176 kb on - strand, within GFF3587at 177.310 kb on + strand, within GFF3587at 177.311 kb on - strand, within GFF3587at 177.311 kb on - strand, within GFF3587at 177.410 kb on - strand, within GFF3587at 177.499 kb on + strand, within GFF3587at 177.513 kb on + strand, within GFF3587at 177.514 kb on - strand, within GFF3587at 177.588 kb on + strandat 177.588 kb on + strandat 177.589 kb on - strandat 177.589 kb on - strandat 177.667 kb on + strandat 177.747 kb on - strandat 177.884 kb on - strand, within GFF3588at 177.939 kb on + strand, within GFF3588at 177.940 kb on - strand, within GFF3588at 177.940 kb on - strand, within GFF3588at 177.984 kb on + strand, within GFF3588at 177.985 kb on - strand, within GFF3588at 177.985 kb on - strand, within GFF3588at 178.228 kb on + strand, within GFF3588at 178.228 kb on + strand, within GFF3588at 178.229 kb on - strand, within GFF3588at 178.229 kb on - strand, within GFF3588at 178.229 kb on - strand, within GFF3588at 178.318 kb on + strandat 178.318 kb on + strandat 178.318 kb on + strandat 178.318 kb on + strandat 178.319 kb on - strandat 178.323 kb on - strandat 178.323 kb on - strandat 178.333 kb on - strandat 178.333 kb on - strandat 178.357 kb on + strandat 178.357 kb on + strandat 178.357 kb on + strandat 178.357 kb on + strandat 178.358 kb on - strandat 178.358 kb on - strandat 178.358 kb on - strandat 178.358 kb on - strandat 178.358 kb on - strandat 178.358 kb on - strandat 178.360 kb on - strandat 178.378 kb on - strandat 178.404 kb on + strand, within GFF3589at 178.405 kb on - strand, within GFF3589at 178.414 kb on + strand, within GFF3589at 178.414 kb on + strand, within GFF3589at 178.414 kb on + strand, within GFF3589at 178.414 kb on + strand, within GFF3589at 178.414 kb on + strand, within GFF3589at 178.415 kb on - strand, within GFF3589at 178.415 kb on - strand, within GFF3589at 178.415 kb on - strand, within GFF3589at 178.415 kb on - strand, within GFF3589at 178.415 kb on - strand, within GFF3589at 178.415 kb on - strand, within GFF3589at 178.474 kb on + strand, within GFF3589at 178.474 kb on + strand, within GFF3589at 178.475 kb on - strand, within GFF3589at 178.475 kb on - strand, within GFF3589at 178.475 kb on - strand, within GFF3589at 178.780 kb on - strand, within GFF3590at 178.780 kb on - strand, within GFF3590at 178.822 kb on + strand, within GFF3590at 178.822 kb on + strand, within GFF3590at 178.823 kb on - strand, within GFF3590at 178.971 kb on + strand, within GFF3590at 178.972 kb on - strand, within GFF3590at 179.078 kb on + strand, within GFF3590at 179.079 kb on - strand, within GFF3590at 179.079 kb on - strand, within GFF3590at 179.079 kb on - strand, within GFF3590at 179.079 kb on - strand, within GFF3590at 179.328 kb on + strand, within GFF3590at 179.328 kb on + strand, within GFF3590at 179.328 kb on + strand, within GFF3590at 179.328 kb on + strand, within GFF3590at 179.328 kb on + strand, within GFF3590at 179.328 kb on + strand, within GFF3590at 179.329 kb on - strand, within GFF3590at 179.329 kb on - strand, within GFF3590at 179.329 kb on - strand, within GFF3590

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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176,872 + GFF3587 0.56 +0.9
176,872 + GFF3587 0.56 +1.5
176,873 - GFF3587 0.56 -0.3
176,938 - GFF3587 0.60 -0.1
177,024 + GFF3587 0.64 -0.1
177,073 + GFF3587 0.66 -1.1
177,074 - GFF3587 0.66 +1.3
177,155 - GFF3587 0.71 -0.7
177,176 - GFF3587 0.72 -0.6
177,310 + GFF3587 0.78 -0.3
177,311 - GFF3587 0.78 +0.8
177,311 - GFF3587 0.78 +0.5
177,410 - GFF3587 0.83 +0.2
177,499 + GFF3587 0.88 +0.2
177,513 + GFF3587 0.89 -1.0
177,514 - GFF3587 0.89 -1.2
177,588 + +0.1
177,588 + -0.1
177,589 - +1.1
177,589 - -1.5
177,667 + +0.1
177,747 - +0.3
177,884 - GFF3588 0.24 +0.3
177,939 + GFF3588 0.33 +0.3
177,940 - GFF3588 0.33 +1.3
177,940 - GFF3588 0.33 -0.5
177,984 + GFF3588 0.40 +0.3
177,985 - GFF3588 0.40 -0.5
177,985 - GFF3588 0.40 +0.3
178,228 + GFF3588 0.80 -0.4
178,228 + GFF3588 0.80 +0.2
178,229 - GFF3588 0.80 +1.1
178,229 - GFF3588 0.80 -0.9
178,229 - GFF3588 0.80 -0.4
178,318 + -0.7
178,318 + +0.4
178,318 + -0.6
178,318 + -0.0
178,319 - -0.7
178,323 - -0.6
178,323 - -0.9
178,333 - -2.3
178,333 - -1.3
178,357 + -1.0
178,357 + +0.8
178,357 + +0.2
178,357 + +0.2
178,358 - +0.8
178,358 - -0.4
178,358 - -1.4
178,358 - -0.8
178,358 - -0.8
178,358 - -0.6
178,360 - -1.3
178,378 - +0.1
178,404 + GFF3589 0.15 -0.8
178,405 - GFF3589 0.15 -0.5
178,414 + GFF3589 0.18 -0.5
178,414 + GFF3589 0.18 +0.1
178,414 + GFF3589 0.18 -0.6
178,414 + GFF3589 0.18 +0.5
178,414 + GFF3589 0.18 -0.5
178,415 - GFF3589 0.18 -0.0
178,415 - GFF3589 0.18 -0.0
178,415 - GFF3589 0.18 -1.0
178,415 - GFF3589 0.18 -0.1
178,415 - GFF3589 0.18 -0.7
178,415 - GFF3589 0.18 +1.6
178,474 + GFF3589 0.35 -1.0
178,474 + GFF3589 0.35 +1.5
178,475 - GFF3589 0.36 -1.0
178,475 - GFF3589 0.36 -0.9
178,475 - GFF3589 0.36 +1.0
178,780 - GFF3590 0.13 -0.7
178,780 - GFF3590 0.13 +0.7
178,822 + GFF3590 0.17 -0.7
178,822 + GFF3590 0.17 -0.1
178,823 - GFF3590 0.17 -0.0
178,971 + GFF3590 0.31 -0.6
178,972 - GFF3590 0.31 +1.1
179,078 + GFF3590 0.42 +0.5
179,079 - GFF3590 0.42 -1.7
179,079 - GFF3590 0.42 +0.1
179,079 - GFF3590 0.42 -2.0
179,079 - GFF3590 0.42 +0.3
179,328 + GFF3590 0.66 -1.1
179,328 + GFF3590 0.66 +0.3
179,328 + GFF3590 0.66 -1.5
179,328 + GFF3590 0.66 +1.0
179,328 + GFF3590 0.66 -0.6
179,328 + GFF3590 0.66 -0.0
179,329 - GFF3590 0.66 -1.6
179,329 - GFF3590 0.66 -1.8
179,329 - GFF3590 0.66 -0.2

Or see this region's nucleotide sequence