Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3280 and GFF3281 are separated by 9 nucleotides GFF3281 and GFF3282 are separated by 227 nucleotides GFF3282 and GFF3283 are separated by 43 nucleotides GFF3283 and GFF3284 are separated by 109 nucleotides
GFF3280 - L-methionine sulfoximine/L-methionine sulfone acetyltransferase, at 266,556 to 267,089
GFF3280
GFF3281 - Urease subunit gamma, at 267,099 to 267,401
GFF3281
GFF3282 - Urease accessory protein UreD, at 267,629 to 268,468
GFF3282
GFF3283 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 268,512 to 269,210
GFF3283
GFF3284 - Lipopolysaccharide export system ATP-binding protein LptB, at 269,320 to 270,189
GFF3284
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1 at 266.825 kb on - strand, within GFF3280 at 266.825 kb on - strand, within GFF3280 at 266.825 kb on - strand, within GFF3280 at 267.031 kb on + strand, within GFF3280 at 267.031 kb on + strand, within GFF3280 at 267.032 kb on - strand, within GFF3280 at 267.032 kb on - strand, within GFF3280 at 267.082 kb on + strand at 267.082 kb on + strand at 267.082 kb on + strand at 267.289 kb on + strand, within GFF3281 at 267.289 kb on + strand, within GFF3281 at 267.289 kb on + strand, within GFF3281 at 267.289 kb on + strand, within GFF3281 at 267.289 kb on + strand, within GFF3281 at 267.290 kb on - strand, within GFF3281 at 267.290 kb on - strand, within GFF3281 at 267.290 kb on - strand, within GFF3281 at 267.477 kb on + strand at 267.478 kb on - strand at 267.478 kb on - strand at 267.542 kb on - strand at 267.557 kb on + strand at 267.642 kb on - strand at 267.642 kb on - strand at 267.642 kb on - strand at 267.642 kb on - strand at 267.683 kb on + strand at 267.695 kb on + strand at 268.035 kb on + strand, within GFF3282 at 268.098 kb on + strand, within GFF3282 at 268.168 kb on - strand, within GFF3282 at 268.168 kb on - strand, within GFF3282 at 268.168 kb on - strand, within GFF3282 at 268.330 kb on - strand, within GFF3282 at 268.405 kb on - strand at 268.439 kb on - strand at 268.493 kb on + strand at 268.533 kb on + strand at 268.533 kb on + strand at 268.550 kb on + strand at 268.600 kb on + strand, within GFF3283 at 268.601 kb on - strand, within GFF3283 at 268.601 kb on - strand, within GFF3283 at 268.631 kb on - strand, within GFF3283 at 268.932 kb on + strand, within GFF3283 at 268.932 kb on + strand, within GFF3283 at 268.973 kb on - strand, within GFF3283 at 269.180 kb on - strand at 269.183 kb on - strand at 269.183 kb on - strand at 269.183 kb on - strand at 269.205 kb on + strand at 269.205 kb on + strand at 269.206 kb on - strand at 269.206 kb on - strand at 269.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 266,825 - GFF3280 0.50 -0.4 266,825 - GFF3280 0.50 -0.5 266,825 - GFF3280 0.50 +0.2 267,031 + GFF3280 0.89 -1.4 267,031 + GFF3280 0.89 -0.5 267,032 - GFF3280 0.89 -0.3 267,032 - GFF3280 0.89 +0.8 267,082 + -1.0 267,082 + +0.5 267,082 + -0.6 267,289 + GFF3281 0.63 +0.1 267,289 + GFF3281 0.63 -0.9 267,289 + GFF3281 0.63 +0.1 267,289 + GFF3281 0.63 +0.3 267,289 + GFF3281 0.63 -0.5 267,290 - GFF3281 0.63 -0.3 267,290 - GFF3281 0.63 +1.2 267,290 - GFF3281 0.63 -0.9 267,477 + -0.3 267,478 - +0.1 267,478 - +0.3 267,542 - +0.5 267,557 + -1.5 267,642 - -0.6 267,642 - -0.5 267,642 - -0.2 267,642 - -0.1 267,683 + -2.3 267,695 + +0.5 268,035 + GFF3282 0.48 +0.4 268,098 + GFF3282 0.56 -1.1 268,168 - GFF3282 0.64 -2.0 268,168 - GFF3282 0.64 -1.3 268,168 - GFF3282 0.64 -1.1 268,330 - GFF3282 0.83 -0.2 268,405 - -1.0 268,439 - -1.5 268,493 + +0.1 268,533 + -0.5 268,533 + +0.1 268,550 + +0.0 268,600 + GFF3283 0.13 -0.9 268,601 - GFF3283 0.13 +0.7 268,601 - GFF3283 0.13 -0.0 268,631 - GFF3283 0.17 -0.7 268,932 + GFF3283 0.60 +0.2 268,932 + GFF3283 0.60 -0.4 268,973 - GFF3283 0.66 -1.2 269,180 - -0.4 269,183 - +0.9 269,183 - -0.3 269,183 - -0.4 269,205 + -0.1 269,205 + +1.0 269,206 - +1.1 269,206 - +0.1 269,282 - -0.7
Or see this region's nucleotide sequence