Strain Fitness in Pseudomonas sp. DMC3 around GFF3257

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3256 and GFF3257 are separated by 743 nucleotidesGFF3257 and GFF3258 are separated by 176 nucleotides GFF3256 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 242,708 to 243,424 GFF3256 GFF3257 - Sulfoacetaldehyde reductase, at 244,168 to 244,932 GFF3257 GFF3258 - Zinc transporter ZitB, at 245,109 to 246,014 GFF3258 Position (kb) 244 245Strain fitness (log2 ratio) -3 -2 -1 0 1at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.329 kb on + strand, within GFF3256at 243.330 kb on - strand, within GFF3256at 243.330 kb on - strand, within GFF3256at 243.330 kb on - strand, within GFF3256at 243.330 kb on - strand, within GFF3256at 243.333 kb on + strand, within GFF3256at 243.333 kb on + strand, within GFF3256at 243.333 kb on + strand, within GFF3256at 243.333 kb on + strand, within GFF3256at 243.333 kb on + strand, within GFF3256at 243.333 kb on + strand, within GFF3256at 243.333 kb on + strand, within GFF3256at 243.334 kb on - strand, within GFF3256at 243.334 kb on - strand, within GFF3256at 243.334 kb on - strand, within GFF3256at 243.334 kb on - strand, within GFF3256at 243.334 kb on - strand, within GFF3256at 243.334 kb on - strand, within GFF3256at 243.334 kb on - strand, within GFF3256at 243.407 kb on + strandat 243.408 kb on - strandat 243.408 kb on - strandat 243.440 kb on + strandat 243.440 kb on + strandat 243.440 kb on + strandat 243.440 kb on + strandat 243.441 kb on - strandat 243.441 kb on - strandat 243.441 kb on - strandat 243.498 kb on - strandat 243.498 kb on - strandat 243.498 kb on - strandat 243.506 kb on + strandat 243.557 kb on + strandat 243.557 kb on + strandat 243.557 kb on + strandat 243.558 kb on - strandat 243.558 kb on - strandat 243.560 kb on - strandat 243.560 kb on - strandat 243.639 kb on + strandat 243.640 kb on - strandat 243.640 kb on - strandat 243.640 kb on - strandat 243.640 kb on - strandat 243.641 kb on + strandat 243.658 kb on + strandat 243.738 kb on + strandat 243.758 kb on + strandat 243.784 kb on + strandat 244.003 kb on + strandat 244.023 kb on - strandat 244.023 kb on - strandat 244.126 kb on + strandat 244.185 kb on + strandat 244.513 kb on + strand, within GFF3257at 244.513 kb on + strand, within GFF3257at 244.514 kb on - strand, within GFF3257at 244.769 kb on - strand, within GFF3257at 244.769 kb on - strand, within GFF3257at 244.769 kb on - strand, within GFF3257at 244.769 kb on - strand, within GFF3257at 244.781 kb on - strand, within GFF3257at 244.781 kb on - strand, within GFF3257at 244.854 kb on + strand, within GFF3257at 244.855 kb on - strand, within GFF3257at 244.920 kb on + strandat 245.046 kb on + strandat 245.046 kb on + strandat 245.047 kb on - strandat 245.047 kb on - strandat 245.385 kb on + strand, within GFF3258at 245.385 kb on + strand, within GFF3258at 245.385 kb on + strand, within GFF3258at 245.386 kb on - strand, within GFF3258at 245.386 kb on - strand, within GFF3258at 245.386 kb on - strand, within GFF3258at 245.386 kb on - strand, within GFF3258at 245.386 kb on - strand, within GFF3258at 245.433 kb on - strand, within GFF3258at 245.433 kb on - strand, within GFF3258at 245.471 kb on + strand, within GFF3258at 245.472 kb on - strand, within GFF3258at 245.490 kb on + strand, within GFF3258at 245.499 kb on + strand, within GFF3258at 245.499 kb on + strand, within GFF3258at 245.500 kb on - strand, within GFF3258at 245.635 kb on - strand, within GFF3258at 245.652 kb on + strand, within GFF3258at 245.652 kb on + strand, within GFF3258at 245.653 kb on - strand, within GFF3258at 245.653 kb on - strand, within GFF3258at 245.653 kb on - strand, within GFF3258at 245.677 kb on + strand, within GFF3258at 245.677 kb on + strand, within GFF3258at 245.744 kb on + strand, within GFF3258at 245.820 kb on + strand, within GFF3258at 245.820 kb on + strand, within GFF3258at 245.820 kb on + strand, within GFF3258at 245.820 kb on + strand, within GFF3258at 245.820 kb on + strand, within GFF3258at 245.820 kb on + strand, within GFF3258at 245.821 kb on - strand, within GFF3258at 245.821 kb on - strand, within GFF3258at 245.829 kb on + strand, within GFF3258at 245.830 kb on - strand, within GFF3258at 245.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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243,329 + GFF3256 0.87 -0.8
243,329 + GFF3256 0.87 +0.5
243,329 + GFF3256 0.87 -0.7
243,329 + GFF3256 0.87 -0.4
243,329 + GFF3256 0.87 -0.6
243,329 + GFF3256 0.87 +1.6
243,329 + GFF3256 0.87 -0.3
243,329 + GFF3256 0.87 +0.1
243,329 + GFF3256 0.87 -1.4
243,329 + GFF3256 0.87 +1.0
243,330 - GFF3256 0.87 +0.7
243,330 - GFF3256 0.87 -0.1
243,330 - GFF3256 0.87 -0.7
243,330 - GFF3256 0.87 -2.5
243,333 + GFF3256 0.87 -0.6
243,333 + GFF3256 0.87 -0.3
243,333 + GFF3256 0.87 +0.5
243,333 + GFF3256 0.87 -0.6
243,333 + GFF3256 0.87 +0.7
243,333 + GFF3256 0.87 +1.1
243,333 + GFF3256 0.87 -0.1
243,334 - GFF3256 0.87 -0.1
243,334 - GFF3256 0.87 -1.1
243,334 - GFF3256 0.87 +0.1
243,334 - GFF3256 0.87 +0.7
243,334 - GFF3256 0.87 +0.4
243,334 - GFF3256 0.87 -2.1
243,334 - GFF3256 0.87 -0.1
243,407 + +1.2
243,408 - -1.2
243,408 - +1.7
243,440 + -0.6
243,440 + +0.6
243,440 + -0.1
243,440 + -0.5
243,441 - +0.5
243,441 - +0.0
243,441 - -0.2
243,498 - +0.3
243,498 - +0.1
243,498 - +0.8
243,506 + -0.2
243,557 + +0.3
243,557 + +0.2
243,557 + -1.1
243,558 - -0.4
243,558 - +0.0
243,560 - -1.0
243,560 - +0.1
243,639 + +0.2
243,640 - -0.7
243,640 - -0.9
243,640 - -0.5
243,640 - -0.0
243,641 + +1.2
243,658 + -2.1
243,738 + +0.4
243,758 + +0.2
243,784 + -0.1
244,003 + -1.6
244,023 - -3.2
244,023 - -0.3
244,126 + -0.2
244,185 + -0.8
244,513 + GFF3257 0.45 -0.1
244,513 + GFF3257 0.45 -0.4
244,514 - GFF3257 0.45 -0.3
244,769 - GFF3257 0.79 -1.2
244,769 - GFF3257 0.79 -2.7
244,769 - GFF3257 0.79 -0.8
244,769 - GFF3257 0.79 -1.0
244,781 - GFF3257 0.80 -0.8
244,781 - GFF3257 0.80 -1.3
244,854 + GFF3257 0.90 -0.4
244,855 - GFF3257 0.90 -0.4
244,920 + -1.4
245,046 + -0.7
245,046 + -0.0
245,047 - +0.0
245,047 - +0.4
245,385 + GFF3258 0.30 -1.0
245,385 + GFF3258 0.30 +0.7
245,385 + GFF3258 0.30 +0.0
245,386 - GFF3258 0.31 -0.3
245,386 - GFF3258 0.31 -0.3
245,386 - GFF3258 0.31 -0.5
245,386 - GFF3258 0.31 -0.6
245,386 - GFF3258 0.31 -1.0
245,433 - GFF3258 0.36 -0.6
245,433 - GFF3258 0.36 +0.6
245,471 + GFF3258 0.40 -0.0
245,472 - GFF3258 0.40 -0.7
245,490 + GFF3258 0.42 -0.9
245,499 + GFF3258 0.43 +0.0
245,499 + GFF3258 0.43 -1.0
245,500 - GFF3258 0.43 -0.1
245,635 - GFF3258 0.58 -0.1
245,652 + GFF3258 0.60 +1.0
245,652 + GFF3258 0.60 -1.5
245,653 - GFF3258 0.60 -1.4
245,653 - GFF3258 0.60 -0.3
245,653 - GFF3258 0.60 -0.6
245,677 + GFF3258 0.63 -0.1
245,677 + GFF3258 0.63 -0.6
245,744 + GFF3258 0.70 -1.4
245,820 + GFF3258 0.78 -1.3
245,820 + GFF3258 0.78 -0.1
245,820 + GFF3258 0.78 +0.2
245,820 + GFF3258 0.78 +0.5
245,820 + GFF3258 0.78 -1.2
245,820 + GFF3258 0.78 +0.3
245,821 - GFF3258 0.79 +0.4
245,821 - GFF3258 0.79 -0.2
245,829 + GFF3258 0.79 +0.5
245,830 - GFF3258 0.80 +0.3
245,924 - -0.9

Or see this region's nucleotide sequence