Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3076 and GFF3077 are separated by 13 nucleotides GFF3077 and GFF3078 are separated by 228 nucleotides GFF3078 and GFF3079 are separated by 10 nucleotides
GFF3076 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE, at 16,269 to 17,180
GFF3076
GFF3077 - hypothetical protein, at 17,194 to 17,469
GFF3077
GFF3078 - hypothetical protein, at 17,698 to 18,120
GFF3078
GFF3079 - hypothetical protein, at 18,131 to 19,036
GFF3079
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 17.112 kb on + strand at 17.236 kb on + strand, within GFF3077 at 17.236 kb on + strand, within GFF3077 at 17.237 kb on - strand, within GFF3077 at 17.535 kb on + strand at 17.633 kb on + strand at 17.633 kb on + strand at 17.633 kb on + strand at 17.743 kb on - strand, within GFF3078 at 17.743 kb on - strand, within GFF3078 at 17.831 kb on - strand, within GFF3078 at 17.831 kb on - strand, within GFF3078 at 18.070 kb on - strand, within GFF3078 at 18.227 kb on + strand, within GFF3079 at 18.227 kb on + strand, within GFF3079 at 18.228 kb on - strand, within GFF3079 at 18.580 kb on + strand, within GFF3079 at 18.580 kb on + strand, within GFF3079 at 18.581 kb on - strand, within GFF3079 at 18.581 kb on - strand, within GFF3079 at 18.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 17,112 + -0.6 17,236 + GFF3077 0.15 +0.2 17,236 + GFF3077 0.15 +0.4 17,237 - GFF3077 0.16 +0.0 17,535 + +0.4 17,633 + -0.4 17,633 + +0.2 17,633 + -0.3 17,743 - GFF3078 0.11 -1.0 17,743 - GFF3078 0.11 +1.3 17,831 - GFF3078 0.31 -1.7 17,831 - GFF3078 0.31 -1.0 18,070 - GFF3078 0.88 -0.6 18,227 + GFF3079 0.11 +0.3 18,227 + GFF3079 0.11 -0.2 18,228 - GFF3079 0.11 -2.4 18,580 + GFF3079 0.50 -0.8 18,580 + GFF3079 0.50 +0.0 18,581 - GFF3079 0.50 -0.9 18,581 - GFF3079 0.50 +1.7 18,989 - +0.6
Or see this region's nucleotide sequence