Strain Fitness in Pseudomonas sp. DMC3 around GFF2801

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2800 and GFF2801 are separated by 154 nucleotidesGFF2801 and GFF2802 are separated by 7 nucleotides GFF2800 - hypothetical protein, at 131,745 to 133,223 GFF2800 GFF2801 - HTH-type transcriptional regulator DmlR, at 133,378 to 134,379 GFF2801 GFF2802 - putative transporter, at 134,387 to 135,586 GFF2802 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 132.385 kb on - strand, within GFF2800at 132.491 kb on - strand, within GFF2800at 132.491 kb on - strand, within GFF2800at 132.523 kb on + strand, within GFF2800at 132.523 kb on + strand, within GFF2800at 132.523 kb on + strand, within GFF2800at 132.523 kb on + strand, within GFF2800at 132.523 kb on + strand, within GFF2800at 132.523 kb on + strand, within GFF2800at 132.524 kb on - strand, within GFF2800at 132.524 kb on - strand, within GFF2800at 132.524 kb on - strand, within GFF2800at 132.556 kb on + strand, within GFF2800at 132.556 kb on + strand, within GFF2800at 132.557 kb on - strand, within GFF2800at 132.557 kb on - strand, within GFF2800at 132.557 kb on - strand, within GFF2800at 132.557 kb on - strand, within GFF2800at 132.557 kb on - strand, within GFF2800at 132.565 kb on + strand, within GFF2800at 132.565 kb on + strand, within GFF2800at 132.565 kb on + strand, within GFF2800at 132.565 kb on + strand, within GFF2800at 132.565 kb on + strand, within GFF2800at 132.565 kb on + strand, within GFF2800at 132.566 kb on - strand, within GFF2800at 132.566 kb on - strand, within GFF2800at 132.643 kb on + strand, within GFF2800at 132.643 kb on + strand, within GFF2800at 132.937 kb on + strand, within GFF2800at 132.937 kb on + strand, within GFF2800at 132.938 kb on - strand, within GFF2800at 132.938 kb on - strand, within GFF2800at 132.938 kb on - strand, within GFF2800at 132.938 kb on - strand, within GFF2800at 133.093 kb on + strandat 133.093 kb on + strandat 133.093 kb on + strandat 133.093 kb on + strandat 133.093 kb on + strandat 133.094 kb on - strandat 133.094 kb on - strandat 133.094 kb on - strandat 133.224 kb on + strandat 133.224 kb on + strandat 133.224 kb on + strandat 133.224 kb on + strandat 133.224 kb on + strandat 133.224 kb on + strandat 133.224 kb on + strandat 133.225 kb on - strandat 133.225 kb on - strandat 133.225 kb on - strandat 133.236 kb on - strandat 133.259 kb on - strandat 133.336 kb on + strandat 133.336 kb on + strandat 133.336 kb on + strandat 133.337 kb on - strandat 133.337 kb on - strandat 133.337 kb on - strandat 133.337 kb on - strandat 133.379 kb on + strandat 133.380 kb on - strandat 133.380 kb on - strandat 133.467 kb on - strandat 133.512 kb on - strand, within GFF2801at 133.710 kb on - strand, within GFF2801at 134.128 kb on - strand, within GFF2801at 134.238 kb on - strand, within GFF2801at 134.292 kb on + strandat 134.355 kb on + strandat 134.355 kb on + strandat 134.355 kb on + strandat 134.356 kb on - strandat 134.356 kb on - strandat 134.356 kb on - strandat 134.356 kb on - strandat 134.418 kb on - strandat 134.481 kb on + strandat 134.482 kb on - strandat 134.482 kb on - strandat 134.482 kb on - strandat 134.482 kb on - strandat 134.538 kb on + strand, within GFF2802at 134.539 kb on - strand, within GFF2802at 134.658 kb on + strand, within GFF2802at 134.658 kb on + strand, within GFF2802at 134.658 kb on + strand, within GFF2802at 134.659 kb on - strand, within GFF2802at 134.723 kb on - strand, within GFF2802at 134.970 kb on + strand, within GFF2802at 134.970 kb on + strand, within GFF2802at 134.970 kb on + strand, within GFF2802at 134.970 kb on + strand, within GFF2802at 134.970 kb on + strand, within GFF2802at 134.970 kb on + strand, within GFF2802at 134.971 kb on - strand, within GFF2802at 134.971 kb on - strand, within GFF2802at 134.971 kb on - strand, within GFF2802at 134.971 kb on - strand, within GFF2802at 134.971 kb on - strand, within GFF2802at 135.055 kb on - strand, within GFF2802at 135.055 kb on - strand, within GFF2802

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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132,385 - GFF2800 0.43 +0.2
132,491 - GFF2800 0.50 -0.6
132,491 - GFF2800 0.50 -0.7
132,523 + GFF2800 0.53 -0.2
132,523 + GFF2800 0.53 +1.9
132,523 + GFF2800 0.53 +0.4
132,523 + GFF2800 0.53 -0.3
132,523 + GFF2800 0.53 -0.8
132,523 + GFF2800 0.53 -0.4
132,524 - GFF2800 0.53 -0.7
132,524 - GFF2800 0.53 -1.1
132,524 - GFF2800 0.53 +0.3
132,556 + GFF2800 0.55 +1.7
132,556 + GFF2800 0.55 -0.3
132,557 - GFF2800 0.55 -0.4
132,557 - GFF2800 0.55 -0.2
132,557 - GFF2800 0.55 -0.5
132,557 - GFF2800 0.55 -0.7
132,557 - GFF2800 0.55 -1.3
132,565 + GFF2800 0.55 -0.3
132,565 + GFF2800 0.55 -0.8
132,565 + GFF2800 0.55 +1.3
132,565 + GFF2800 0.55 +1.1
132,565 + GFF2800 0.55 -0.7
132,565 + GFF2800 0.55 -0.5
132,566 - GFF2800 0.56 -0.3
132,566 - GFF2800 0.56 -1.0
132,643 + GFF2800 0.61 +0.6
132,643 + GFF2800 0.61 +1.9
132,937 + GFF2800 0.81 +1.8
132,937 + GFF2800 0.81 -1.0
132,938 - GFF2800 0.81 -0.9
132,938 - GFF2800 0.81 -1.6
132,938 - GFF2800 0.81 -0.4
132,938 - GFF2800 0.81 +0.2
133,093 + -0.4
133,093 + -1.3
133,093 + +0.5
133,093 + +0.3
133,093 + +0.6
133,094 - -0.1
133,094 - +1.5
133,094 - -1.0
133,224 + -0.0
133,224 + -0.7
133,224 + -0.8
133,224 + +0.5
133,224 + +0.1
133,224 + -0.4
133,224 + -0.7
133,225 - -1.7
133,225 - +0.7
133,225 - -0.8
133,236 - -0.8
133,259 - -1.3
133,336 + -2.1
133,336 + -1.0
133,336 + +0.8
133,337 - -0.0
133,337 - -1.0
133,337 - -0.2
133,337 - -1.5
133,379 + +0.5
133,380 - -0.4
133,380 - -0.6
133,467 - -1.3
133,512 - GFF2801 0.13 -2.4
133,710 - GFF2801 0.33 -1.3
134,128 - GFF2801 0.75 -1.2
134,238 - GFF2801 0.86 -0.8
134,292 + +1.1
134,355 + -0.9
134,355 + -0.4
134,355 + -0.8
134,356 - -0.6
134,356 - +0.2
134,356 - +0.1
134,356 - +0.7
134,418 - +1.1
134,481 + +1.2
134,482 - -1.0
134,482 - -0.1
134,482 - +0.3
134,482 - -0.4
134,538 + GFF2802 0.13 +0.1
134,539 - GFF2802 0.13 -0.6
134,658 + GFF2802 0.23 -0.0
134,658 + GFF2802 0.23 -1.6
134,658 + GFF2802 0.23 -0.7
134,659 - GFF2802 0.23 -0.2
134,723 - GFF2802 0.28 -0.2
134,970 + GFF2802 0.49 +0.2
134,970 + GFF2802 0.49 -1.6
134,970 + GFF2802 0.49 -0.9
134,970 + GFF2802 0.49 -0.5
134,970 + GFF2802 0.49 +0.3
134,970 + GFF2802 0.49 +0.3
134,971 - GFF2802 0.49 -0.7
134,971 - GFF2802 0.49 -0.3
134,971 - GFF2802 0.49 -0.5
134,971 - GFF2802 0.49 +0.7
134,971 - GFF2802 0.49 +1.1
135,055 - GFF2802 0.56 -0.2
135,055 - GFF2802 0.56 -0.3

Or see this region's nucleotide sequence