Strain Fitness in Pseudomonas sp. DMC3 around GFF2750

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2749 and GFF2750 are separated by 84 nucleotidesGFF2750 and GFF2751 are separated by 77 nucleotides GFF2749 - L-cysteate sulfo-lyase, at 75,058 to 76,086 GFF2749 GFF2750 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 76,171 to 76,800 GFF2750 GFF2751 - hypothetical protein, at 76,878 to 77,699 GFF2751 Position (kb) 76 77Strain fitness (log2 ratio) -2 -1 0 1at 75.191 kb on - strand, within GFF2749at 75.231 kb on + strand, within GFF2749at 75.231 kb on + strand, within GFF2749at 75.375 kb on + strand, within GFF2749at 75.375 kb on + strand, within GFF2749at 75.376 kb on - strand, within GFF2749at 75.376 kb on - strand, within GFF2749at 75.376 kb on - strand, within GFF2749at 75.376 kb on - strand, within GFF2749at 75.420 kb on + strand, within GFF2749at 75.421 kb on - strand, within GFF2749at 75.431 kb on + strand, within GFF2749at 75.431 kb on + strand, within GFF2749at 75.431 kb on + strand, within GFF2749at 75.431 kb on + strand, within GFF2749at 75.432 kb on - strand, within GFF2749at 75.432 kb on - strand, within GFF2749at 75.432 kb on - strand, within GFF2749at 75.432 kb on - strand, within GFF2749at 75.432 kb on - strand, within GFF2749at 75.432 kb on - strand, within GFF2749at 75.496 kb on + strand, within GFF2749at 75.496 kb on + strand, within GFF2749at 75.496 kb on + strand, within GFF2749at 75.496 kb on + strand, within GFF2749at 75.497 kb on - strand, within GFF2749at 75.497 kb on - strand, within GFF2749at 75.551 kb on + strand, within GFF2749at 75.551 kb on + strand, within GFF2749at 75.551 kb on + strand, within GFF2749at 75.551 kb on + strand, within GFF2749at 75.877 kb on + strand, within GFF2749at 75.877 kb on + strand, within GFF2749at 75.878 kb on - strand, within GFF2749at 75.955 kb on + strand, within GFF2749at 76.025 kb on + strandat 76.025 kb on + strandat 76.025 kb on + strandat 76.025 kb on + strandat 76.026 kb on - strandat 76.162 kb on + strandat 76.162 kb on + strandat 76.162 kb on + strandat 76.162 kb on + strandat 76.163 kb on - strandat 76.163 kb on - strandat 76.163 kb on - strandat 76.187 kb on - strandat 76.207 kb on + strandat 76.225 kb on + strandat 76.226 kb on - strandat 76.226 kb on - strandat 76.329 kb on - strand, within GFF2750at 76.640 kb on - strand, within GFF2750at 76.657 kb on + strand, within GFF2750at 76.658 kb on - strand, within GFF2750at 76.951 kb on + strandat 76.951 kb on + strandat 76.952 kb on - strandat 76.952 kb on - strandat 76.952 kb on - strandat 76.955 kb on + strandat 76.955 kb on + strandat 76.956 kb on - strandat 76.987 kb on + strand, within GFF2751at 76.988 kb on - strand, within GFF2751at 77.029 kb on + strand, within GFF2751at 77.029 kb on + strand, within GFF2751at 77.029 kb on + strand, within GFF2751at 77.030 kb on - strand, within GFF2751at 77.068 kb on + strand, within GFF2751at 77.068 kb on + strand, within GFF2751at 77.068 kb on + strand, within GFF2751at 77.068 kb on + strand, within GFF2751at 77.068 kb on + strand, within GFF2751at 77.069 kb on - strand, within GFF2751at 77.069 kb on - strand, within GFF2751at 77.069 kb on - strand, within GFF2751at 77.069 kb on - strand, within GFF2751at 77.069 kb on - strand, within GFF2751at 77.069 kb on - strand, within GFF2751at 77.104 kb on + strand, within GFF2751at 77.104 kb on + strand, within GFF2751at 77.104 kb on + strand, within GFF2751at 77.104 kb on + strand, within GFF2751at 77.227 kb on + strand, within GFF2751at 77.227 kb on + strand, within GFF2751at 77.227 kb on + strand, within GFF2751at 77.227 kb on + strand, within GFF2751at 77.227 kb on + strand, within GFF2751at 77.228 kb on - strand, within GFF2751at 77.228 kb on - strand, within GFF2751at 77.231 kb on + strand, within GFF2751at 77.232 kb on - strand, within GFF2751at 77.290 kb on + strand, within GFF2751at 77.291 kb on - strand, within GFF2751at 77.291 kb on - strand, within GFF2751at 77.320 kb on + strand, within GFF2751at 77.321 kb on - strand, within GFF2751at 77.321 kb on - strand, within GFF2751at 77.356 kb on + strand, within GFF2751at 77.357 kb on - strand, within GFF2751at 77.413 kb on + strand, within GFF2751at 77.413 kb on + strand, within GFF2751at 77.413 kb on + strand, within GFF2751at 77.416 kb on + strand, within GFF2751at 77.417 kb on - strand, within GFF2751at 77.417 kb on - strand, within GFF2751at 77.529 kb on - strand, within GFF2751at 77.529 kb on - strand, within GFF2751at 77.566 kb on + strand, within GFF2751at 77.572 kb on + strand, within GFF2751at 77.572 kb on + strand, within GFF2751at 77.634 kb on + strandat 77.634 kb on + strandat 77.635 kb on - strandat 77.635 kb on - strandat 77.676 kb on + strandat 77.676 kb on + strandat 77.676 kb on + strandat 77.676 kb on + strandat 77.676 kb on + strandat 77.676 kb on + strandat 77.677 kb on - strandat 77.677 kb on - strandat 77.677 kb on - strandat 77.677 kb on - strandat 77.677 kb on - strandat 77.677 kb on - strandat 77.684 kb on + strandat 77.785 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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75,191 - GFF2749 0.13 +0.1
75,231 + GFF2749 0.17 -0.5
75,231 + GFF2749 0.17 +0.1
75,375 + GFF2749 0.31 -0.9
75,375 + GFF2749 0.31 +0.8
75,376 - GFF2749 0.31 +0.2
75,376 - GFF2749 0.31 -0.1
75,376 - GFF2749 0.31 +0.2
75,376 - GFF2749 0.31 +0.1
75,420 + GFF2749 0.35 -0.3
75,421 - GFF2749 0.35 +1.5
75,431 + GFF2749 0.36 +0.2
75,431 + GFF2749 0.36 +0.7
75,431 + GFF2749 0.36 -1.1
75,431 + GFF2749 0.36 -0.6
75,432 - GFF2749 0.36 -0.4
75,432 - GFF2749 0.36 +0.4
75,432 - GFF2749 0.36 -1.1
75,432 - GFF2749 0.36 -0.2
75,432 - GFF2749 0.36 +0.3
75,432 - GFF2749 0.36 +0.3
75,496 + GFF2749 0.43 -0.0
75,496 + GFF2749 0.43 -0.3
75,496 + GFF2749 0.43 +0.4
75,496 + GFF2749 0.43 -0.3
75,497 - GFF2749 0.43 +0.6
75,497 - GFF2749 0.43 -0.8
75,551 + GFF2749 0.48 -0.6
75,551 + GFF2749 0.48 -1.9
75,551 + GFF2749 0.48 +1.5
75,551 + GFF2749 0.48 -0.3
75,877 + GFF2749 0.80 +0.9
75,877 + GFF2749 0.80 -0.7
75,878 - GFF2749 0.80 +0.5
75,955 + GFF2749 0.87 +0.3
76,025 + -0.2
76,025 + -0.7
76,025 + -0.1
76,025 + +1.0
76,026 - -0.2
76,162 + -0.1
76,162 + -0.5
76,162 + -1.5
76,162 + -0.7
76,163 - -0.0
76,163 - -0.2
76,163 - +0.9
76,187 - +0.1
76,207 + -0.5
76,225 + +0.3
76,226 - +0.8
76,226 - +0.3
76,329 - GFF2750 0.25 +0.3
76,640 - GFF2750 0.74 -1.3
76,657 + GFF2750 0.77 -0.3
76,658 - GFF2750 0.77 -0.6
76,951 + -1.5
76,951 + -0.6
76,952 - +0.3
76,952 - -0.4
76,952 - -0.9
76,955 + +0.6
76,955 + -0.5
76,956 - -0.1
76,987 + GFF2751 0.13 +1.3
76,988 - GFF2751 0.13 -1.0
77,029 + GFF2751 0.18 +1.3
77,029 + GFF2751 0.18 +0.4
77,029 + GFF2751 0.18 -0.4
77,030 - GFF2751 0.18 -0.9
77,068 + GFF2751 0.23 +0.3
77,068 + GFF2751 0.23 -0.5
77,068 + GFF2751 0.23 +0.7
77,068 + GFF2751 0.23 +0.4
77,068 + GFF2751 0.23 +0.1
77,069 - GFF2751 0.23 -0.2
77,069 - GFF2751 0.23 -0.3
77,069 - GFF2751 0.23 -0.3
77,069 - GFF2751 0.23 +0.3
77,069 - GFF2751 0.23 +0.4
77,069 - GFF2751 0.23 -0.2
77,104 + GFF2751 0.27 -0.7
77,104 + GFF2751 0.27 -0.1
77,104 + GFF2751 0.27 -0.5
77,104 + GFF2751 0.27 -0.5
77,227 + GFF2751 0.42 -0.4
77,227 + GFF2751 0.42 -0.3
77,227 + GFF2751 0.42 -0.8
77,227 + GFF2751 0.42 +0.3
77,227 + GFF2751 0.42 -0.4
77,228 - GFF2751 0.43 +0.1
77,228 - GFF2751 0.43 +1.0
77,231 + GFF2751 0.43 +1.0
77,232 - GFF2751 0.43 -0.7
77,290 + GFF2751 0.50 +0.1
77,291 - GFF2751 0.50 -0.7
77,291 - GFF2751 0.50 +0.1
77,320 + GFF2751 0.54 +0.8
77,321 - GFF2751 0.54 -0.7
77,321 - GFF2751 0.54 +0.5
77,356 + GFF2751 0.58 -0.6
77,357 - GFF2751 0.58 -1.0
77,413 + GFF2751 0.65 -0.6
77,413 + GFF2751 0.65 -0.4
77,413 + GFF2751 0.65 -0.3
77,416 + GFF2751 0.65 -0.8
77,417 - GFF2751 0.66 -0.6
77,417 - GFF2751 0.66 -0.1
77,529 - GFF2751 0.79 -0.6
77,529 - GFF2751 0.79 -0.8
77,566 + GFF2751 0.84 +0.1
77,572 + GFF2751 0.84 -0.1
77,572 + GFF2751 0.84 +0.6
77,634 + +0.1
77,634 + -0.3
77,635 - -0.5
77,635 - +1.0
77,676 + -0.3
77,676 + -0.1
77,676 + +1.0
77,676 + -1.0
77,676 + -0.1
77,676 + +0.3
77,677 - +0.2
77,677 - -1.0
77,677 - +0.7
77,677 - -1.7
77,677 - -0.2
77,677 - +0.3
77,684 + -0.8
77,785 + -1.2

Or see this region's nucleotide sequence