Experiment: D-Glucose and D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2728 and GFF2729 are separated by 5 nucleotides GFF2729 and GFF2730 are separated by 17 nucleotides
GFF2728 - Tyrosine recombinase XerC, at 52,499 to 53,437
GFF2728
GFF2729 - hypothetical protein, at 53,443 to 53,994
GFF2729
GFF2730 - Intermembrane transport protein PqiB, at 54,012 to 55,667
GFF2730
Position (kb) 53
54 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.516 kb on + strand at 52.556 kb on + strand at 52.557 kb on - strand at 52.557 kb on - strand at 52.598 kb on + strand, within GFF2728 at 52.598 kb on + strand, within GFF2728 at 52.598 kb on + strand, within GFF2728 at 52.599 kb on - strand, within GFF2728 at 52.599 kb on - strand, within GFF2728 at 52.599 kb on - strand, within GFF2728 at 52.599 kb on - strand, within GFF2728 at 52.599 kb on - strand, within GFF2728 at 52.599 kb on - strand, within GFF2728 at 52.721 kb on + strand, within GFF2728 at 52.722 kb on - strand, within GFF2728 at 52.746 kb on - strand, within GFF2728 at 52.746 kb on - strand, within GFF2728 at 52.839 kb on + strand, within GFF2728 at 52.839 kb on + strand, within GFF2728 at 52.965 kb on - strand, within GFF2728 at 52.965 kb on - strand, within GFF2728 at 53.228 kb on + strand, within GFF2728 at 53.231 kb on + strand, within GFF2728 at 53.231 kb on + strand, within GFF2728 at 53.232 kb on - strand, within GFF2728 at 53.381 kb on + strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.382 kb on - strand at 53.800 kb on - strand, within GFF2729 at 53.800 kb on - strand, within GFF2729 at 53.800 kb on - strand, within GFF2729 at 53.800 kb on - strand, within GFF2729 at 54.097 kb on + strand at 54.097 kb on + strand at 54.240 kb on + strand, within GFF2730 at 54.241 kb on - strand, within GFF2730 at 54.241 kb on - strand, within GFF2730 at 54.352 kb on + strand, within GFF2730 at 54.473 kb on + strand, within GFF2730 at 54.473 kb on + strand, within GFF2730 at 54.475 kb on + strand, within GFF2730 at 54.475 kb on + strand, within GFF2730 at 54.476 kb on - strand, within GFF2730 at 54.586 kb on + strand, within GFF2730 at 54.586 kb on + strand, within GFF2730 at 54.586 kb on + strand, within GFF2730 at 54.586 kb on + strand, within GFF2730 at 54.587 kb on - strand, within GFF2730 at 54.587 kb on - strand, within GFF2730 at 54.866 kb on + strand, within GFF2730 at 54.866 kb on + strand, within GFF2730 at 54.867 kb on - strand, within GFF2730 at 54.867 kb on - strand, within GFF2730 at 54.880 kb on + strand, within GFF2730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C) remove 52,516 + -0.9 52,556 + +1.3 52,557 - +0.6 52,557 - -1.0 52,598 + GFF2728 0.11 -0.5 52,598 + GFF2728 0.11 -0.7 52,598 + GFF2728 0.11 +0.4 52,599 - GFF2728 0.11 -0.6 52,599 - GFF2728 0.11 +0.3 52,599 - GFF2728 0.11 -0.1 52,599 - GFF2728 0.11 -1.1 52,599 - GFF2728 0.11 +0.9 52,599 - GFF2728 0.11 +0.6 52,721 + GFF2728 0.24 -1.3 52,722 - GFF2728 0.24 -0.3 52,746 - GFF2728 0.26 -0.7 52,746 - GFF2728 0.26 -0.9 52,839 + GFF2728 0.36 -1.4 52,839 + GFF2728 0.36 +0.1 52,965 - GFF2728 0.50 -0.2 52,965 - GFF2728 0.50 -2.0 53,228 + GFF2728 0.78 -0.1 53,231 + GFF2728 0.78 -0.1 53,231 + GFF2728 0.78 -2.1 53,232 - GFF2728 0.78 -1.1 53,381 + -0.8 53,382 - -0.0 53,382 - +0.1 53,382 - -0.9 53,382 - -0.0 53,382 - -0.5 53,382 - -1.3 53,382 - -1.3 53,800 - GFF2729 0.65 -1.6 53,800 - GFF2729 0.65 -1.4 53,800 - GFF2729 0.65 -2.7 53,800 - GFF2729 0.65 -0.1 54,097 + -0.5 54,097 + -1.1 54,240 + GFF2730 0.14 +1.1 54,241 - GFF2730 0.14 -0.7 54,241 - GFF2730 0.14 -0.3 54,352 + GFF2730 0.21 -0.7 54,473 + GFF2730 0.28 -1.3 54,473 + GFF2730 0.28 +0.2 54,475 + GFF2730 0.28 +1.9 54,475 + GFF2730 0.28 -1.4 54,476 - GFF2730 0.28 -0.3 54,586 + GFF2730 0.35 -0.5 54,586 + GFF2730 0.35 +1.6 54,586 + GFF2730 0.35 -0.5 54,586 + GFF2730 0.35 +0.1 54,587 - GFF2730 0.35 +1.3 54,587 - GFF2730 0.35 +2.2 54,866 + GFF2730 0.52 +1.6 54,866 + GFF2730 0.52 -1.9 54,867 - GFF2730 0.52 +0.1 54,867 - GFF2730 0.52 +0.6 54,880 + GFF2730 0.52 +0.3
Or see this region's nucleotide sequence