Strain Fitness in Pseudomonas sp. DMC3 around GFF2635

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2633 and GFF2634 are separated by 92 nucleotidesGFF2634 and GFF2635 are separated by 4 nucleotidesGFF2635 and GFF2636 are separated by 80 nucleotidesGFF2636 and GFF2637 overlap by 4 nucleotidesGFF2637 and GFF2638 are separated by 236 nucleotides GFF2633 - Methylthioribulose-1-phosphate dehydratase, at 435,147 to 435,773 GFF2633 GFF2634 - Acireductone dioxygenase, at 435,866 to 436,411 GFF2634 GFF2635 - Enolase-phosphatase E1, at 436,416 to 437,099 GFF2635 GFF2636 - hypothetical protein, at 437,180 to 437,458 GFF2636 GFF2637 - hypothetical protein, at 437,455 to 437,607 GFF2637 GFF2638 - Crotonobetaine/carnitine--CoA ligase, at 437,844 to 439,682 GFF2638 Position (kb) 436 437 438Strain fitness (log2 ratio) -2 -1 0 1 2at 435.502 kb on - strand, within GFF2633at 435.502 kb on - strand, within GFF2633at 435.642 kb on + strand, within GFF2633at 435.666 kb on + strand, within GFF2633at 435.667 kb on - strand, within GFF2633at 435.667 kb on - strand, within GFF2633at 435.667 kb on - strand, within GFF2633at 435.667 kb on - strand, within GFF2633at 435.667 kb on - strand, within GFF2633at 435.667 kb on - strand, within GFF2633at 435.885 kb on - strandat 436.037 kb on + strand, within GFF2634at 436.037 kb on + strand, within GFF2634at 436.037 kb on + strand, within GFF2634at 436.037 kb on + strand, within GFF2634at 436.038 kb on - strand, within GFF2634at 436.038 kb on - strand, within GFF2634at 436.038 kb on - strand, within GFF2634at 436.038 kb on - strand, within GFF2634at 436.038 kb on - strand, within GFF2634at 436.038 kb on - strand, within GFF2634at 436.038 kb on - strand, within GFF2634at 436.039 kb on + strand, within GFF2634at 436.039 kb on + strand, within GFF2634at 436.039 kb on + strand, within GFF2634at 436.039 kb on + strand, within GFF2634at 436.039 kb on + strand, within GFF2634at 436.039 kb on + strand, within GFF2634at 436.040 kb on - strand, within GFF2634at 436.040 kb on - strand, within GFF2634at 436.077 kb on - strand, within GFF2634at 436.077 kb on - strand, within GFF2634at 436.207 kb on + strand, within GFF2634at 436.226 kb on + strand, within GFF2634at 436.226 kb on + strand, within GFF2634at 436.226 kb on + strand, within GFF2634at 436.226 kb on + strand, within GFF2634at 436.226 kb on + strand, within GFF2634at 436.227 kb on - strand, within GFF2634at 436.227 kb on - strand, within GFF2634at 436.227 kb on - strand, within GFF2634at 436.227 kb on - strand, within GFF2634at 436.232 kb on + strand, within GFF2634at 436.232 kb on + strand, within GFF2634at 436.233 kb on - strand, within GFF2634at 436.233 kb on - strand, within GFF2634at 436.680 kb on - strand, within GFF2635at 436.680 kb on - strand, within GFF2635at 436.788 kb on + strand, within GFF2635at 436.788 kb on + strand, within GFF2635at 436.985 kb on - strand, within GFF2635at 436.985 kb on - strand, within GFF2635at 437.108 kb on + strandat 437.108 kb on + strandat 437.108 kb on + strandat 437.108 kb on + strandat 437.108 kb on + strandat 437.108 kb on + strandat 437.108 kb on + strandat 437.109 kb on - strandat 437.109 kb on - strandat 437.112 kb on + strandat 437.112 kb on + strandat 437.112 kb on + strandat 437.113 kb on - strandat 437.113 kb on - strandat 437.113 kb on - strandat 437.113 kb on - strandat 437.125 kb on + strandat 437.125 kb on + strandat 437.125 kb on + strandat 437.126 kb on - strandat 437.172 kb on - strandat 437.193 kb on + strandat 437.194 kb on - strandat 437.325 kb on + strand, within GFF2636at 437.326 kb on - strand, within GFF2636at 437.326 kb on - strand, within GFF2636at 437.362 kb on + strand, within GFF2636at 437.415 kb on + strand, within GFF2636at 437.415 kb on + strand, within GFF2636at 437.415 kb on + strand, within GFF2636at 437.415 kb on + strand, within GFF2636at 437.415 kb on + strand, within GFF2636at 437.415 kb on + strand, within GFF2636at 437.416 kb on - strand, within GFF2636at 437.416 kb on - strand, within GFF2636at 437.416 kb on - strand, within GFF2636at 437.416 kb on - strand, within GFF2636at 437.416 kb on - strand, within GFF2636at 437.472 kb on + strand, within GFF2637at 437.472 kb on + strand, within GFF2637at 437.473 kb on - strand, within GFF2637at 437.473 kb on - strand, within GFF2637at 437.476 kb on + strand, within GFF2637at 437.476 kb on + strand, within GFF2637at 437.476 kb on + strand, within GFF2637at 437.477 kb on - strand, within GFF2637at 437.477 kb on - strand, within GFF2637at 437.501 kb on + strand, within GFF2637at 437.501 kb on + strand, within GFF2637at 437.698 kb on + strandat 437.723 kb on + strandat 437.724 kb on - strandat 437.745 kb on + strandat 437.745 kb on + strandat 437.745 kb on + strandat 437.745 kb on + strandat 437.746 kb on - strandat 437.746 kb on - strandat 437.746 kb on - strandat 437.746 kb on - strandat 437.746 kb on - strandat 437.746 kb on - strandat 437.770 kb on - strandat 437.870 kb on + strandat 437.870 kb on + strandat 437.871 kb on - strandat 438.058 kb on - strand, within GFF2638at 438.058 kb on - strand, within GFF2638at 438.058 kb on - strand, within GFF2638at 438.058 kb on - strand, within GFF2638at 438.058 kb on - strand, within GFF2638at 438.097 kb on - strand, within GFF2638at 438.097 kb on - strand, within GFF2638

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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435,502 - GFF2633 0.57 +1.4
435,502 - GFF2633 0.57 -1.0
435,642 + GFF2633 0.79 -0.1
435,666 + GFF2633 0.83 +0.4
435,667 - GFF2633 0.83 -0.4
435,667 - GFF2633 0.83 -1.1
435,667 - GFF2633 0.83 +0.1
435,667 - GFF2633 0.83 -0.6
435,667 - GFF2633 0.83 +0.3
435,667 - GFF2633 0.83 -0.4
435,885 - -0.9
436,037 + GFF2634 0.31 -0.2
436,037 + GFF2634 0.31 +1.1
436,037 + GFF2634 0.31 +0.9
436,037 + GFF2634 0.31 -0.3
436,038 - GFF2634 0.32 +0.5
436,038 - GFF2634 0.32 -0.5
436,038 - GFF2634 0.32 +0.1
436,038 - GFF2634 0.32 -1.4
436,038 - GFF2634 0.32 -0.7
436,038 - GFF2634 0.32 +0.1
436,038 - GFF2634 0.32 -0.8
436,039 + GFF2634 0.32 +0.4
436,039 + GFF2634 0.32 -0.6
436,039 + GFF2634 0.32 +0.1
436,039 + GFF2634 0.32 -0.2
436,039 + GFF2634 0.32 +0.9
436,039 + GFF2634 0.32 -0.5
436,040 - GFF2634 0.32 +0.2
436,040 - GFF2634 0.32 +0.3
436,077 - GFF2634 0.39 +1.6
436,077 - GFF2634 0.39 +0.1
436,207 + GFF2634 0.62 +0.1
436,226 + GFF2634 0.66 +0.5
436,226 + GFF2634 0.66 -0.2
436,226 + GFF2634 0.66 +1.8
436,226 + GFF2634 0.66 +1.7
436,226 + GFF2634 0.66 -0.2
436,227 - GFF2634 0.66 +0.5
436,227 - GFF2634 0.66 +0.1
436,227 - GFF2634 0.66 -0.5
436,227 - GFF2634 0.66 +0.2
436,232 + GFF2634 0.67 -0.9
436,232 + GFF2634 0.67 +0.5
436,233 - GFF2634 0.67 -0.7
436,233 - GFF2634 0.67 +1.6
436,680 - GFF2635 0.39 -1.2
436,680 - GFF2635 0.39 -0.7
436,788 + GFF2635 0.54 -0.9
436,788 + GFF2635 0.54 +0.3
436,985 - GFF2635 0.83 -1.5
436,985 - GFF2635 0.83 -0.4
437,108 + -0.4
437,108 + +0.6
437,108 + -0.2
437,108 + -0.6
437,108 + -0.5
437,108 + +0.8
437,108 + +1.3
437,109 - -0.7
437,109 - -0.4
437,112 + +1.4
437,112 + +0.3
437,112 + -0.2
437,113 - -0.2
437,113 - +0.0
437,113 - -0.3
437,113 - -0.1
437,125 + -0.3
437,125 + -0.3
437,125 + -0.3
437,126 - -0.6
437,172 - -0.5
437,193 + +0.4
437,194 - +0.1
437,325 + GFF2636 0.52 -2.2
437,326 - GFF2636 0.52 -0.7
437,326 - GFF2636 0.52 -0.2
437,362 + GFF2636 0.65 +0.1
437,415 + GFF2636 0.84 -0.7
437,415 + GFF2636 0.84 +0.9
437,415 + GFF2636 0.84 +0.1
437,415 + GFF2636 0.84 -0.4
437,415 + GFF2636 0.84 -0.5
437,415 + GFF2636 0.84 +0.6
437,416 - GFF2636 0.85 -0.6
437,416 - GFF2636 0.85 -0.4
437,416 - GFF2636 0.85 -0.2
437,416 - GFF2636 0.85 +0.6
437,416 - GFF2636 0.85 -0.7
437,472 + GFF2637 0.11 +0.7
437,472 + GFF2637 0.11 -0.7
437,473 - GFF2637 0.12 -0.4
437,473 - GFF2637 0.12 -1.0
437,476 + GFF2637 0.14 -0.2
437,476 + GFF2637 0.14 -0.8
437,476 + GFF2637 0.14 -0.5
437,477 - GFF2637 0.14 -0.9
437,477 - GFF2637 0.14 -0.2
437,501 + GFF2637 0.30 -0.2
437,501 + GFF2637 0.30 -0.7
437,698 + +1.1
437,723 + +0.9
437,724 - -0.4
437,745 + -0.6
437,745 + +1.0
437,745 + +0.1
437,745 + -0.1
437,746 - -0.9
437,746 - -2.4
437,746 - -1.5
437,746 - +0.7
437,746 - +0.1
437,746 - -0.5
437,770 - -1.7
437,870 + -0.4
437,870 + -0.8
437,871 - -1.0
438,058 - GFF2638 0.12 -0.1
438,058 - GFF2638 0.12 +0.1
438,058 - GFF2638 0.12 -0.7
438,058 - GFF2638 0.12 -0.5
438,058 - GFF2638 0.12 -0.0
438,097 - GFF2638 0.14 -0.9
438,097 - GFF2638 0.14 +1.2

Or see this region's nucleotide sequence