Strain Fitness in Pseudomonas sp. DMC3 around GFF2528

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2526 and GFF2527 overlap by 1 nucleotidesGFF2527 and GFF2528 are separated by 61 nucleotidesGFF2528 and GFF2529 are separated by 158 nucleotidesGFF2529 and GFF2530 overlap by 4 nucleotides GFF2526 - hypothetical protein, at 318,251 to 318,988 GFF2526 GFF2527 - hypothetical protein, at 318,988 to 319,389 GFF2527 GFF2528 - hypothetical protein, at 319,451 to 319,687 GFF2528 GFF2529 - hypothetical protein, at 319,846 to 320,322 GFF2529 GFF2530 - hypothetical protein, at 320,319 to 320,771 GFF2530 Position (kb) 319 320Strain fitness (log2 ratio) -2 -1 0 1at 318.633 kb on - strand, within GFF2526at 318.643 kb on + strand, within GFF2526at 318.643 kb on + strand, within GFF2526at 318.643 kb on + strand, within GFF2526at 318.644 kb on - strand, within GFF2526at 318.644 kb on - strand, within GFF2526at 318.644 kb on - strand, within GFF2526at 318.668 kb on + strand, within GFF2526at 318.669 kb on - strand, within GFF2526at 318.812 kb on + strand, within GFF2526at 318.812 kb on + strand, within GFF2526at 318.813 kb on - strand, within GFF2526at 318.813 kb on - strand, within GFF2526at 318.813 kb on - strand, within GFF2526at 318.815 kb on + strand, within GFF2526at 318.815 kb on + strand, within GFF2526at 318.815 kb on + strand, within GFF2526at 318.896 kb on + strand, within GFF2526at 318.938 kb on + strandat 318.938 kb on + strandat 318.938 kb on + strandat 318.938 kb on + strandat 318.939 kb on - strandat 318.939 kb on - strandat 318.939 kb on - strandat 318.939 kb on - strandat 318.940 kb on + strandat 318.941 kb on - strandat 318.993 kb on + strandat 318.993 kb on + strandat 318.993 kb on + strandat 318.994 kb on - strandat 318.994 kb on - strandat 319.014 kb on + strandat 319.014 kb on + strandat 319.015 kb on - strandat 319.025 kb on + strandat 319.026 kb on - strandat 319.026 kb on - strandat 319.034 kb on - strand, within GFF2527at 319.044 kb on + strand, within GFF2527at 319.045 kb on - strand, within GFF2527at 319.082 kb on - strand, within GFF2527at 319.207 kb on - strand, within GFF2527at 319.207 kb on - strand, within GFF2527at 319.273 kb on + strand, within GFF2527at 319.273 kb on + strand, within GFF2527at 319.273 kb on + strand, within GFF2527at 319.274 kb on - strand, within GFF2527at 319.274 kb on - strand, within GFF2527at 319.274 kb on - strand, within GFF2527at 319.274 kb on - strand, within GFF2527at 319.274 kb on - strand, within GFF2527at 319.285 kb on + strand, within GFF2527at 319.285 kb on + strand, within GFF2527at 319.285 kb on + strand, within GFF2527at 319.285 kb on + strand, within GFF2527at 319.286 kb on - strand, within GFF2527at 319.286 kb on - strand, within GFF2527at 319.325 kb on + strand, within GFF2527at 319.325 kb on + strand, within GFF2527at 319.360 kb on - strandat 319.387 kb on + strandat 319.394 kb on + strandat 319.452 kb on + strandat 319.452 kb on + strandat 319.452 kb on + strandat 319.453 kb on - strandat 319.547 kb on - strand, within GFF2528at 319.669 kb on + strandat 319.669 kb on + strandat 319.669 kb on + strandat 319.669 kb on + strandat 319.669 kb on + strandat 319.670 kb on - strandat 319.670 kb on - strandat 319.670 kb on - strandat 319.673 kb on + strandat 319.673 kb on + strandat 319.673 kb on + strandat 319.673 kb on + strandat 319.674 kb on - strandat 319.674 kb on - strandat 319.674 kb on - strandat 319.674 kb on - strandat 319.682 kb on - strandat 319.682 kb on - strandat 319.694 kb on + strandat 319.695 kb on - strandat 319.695 kb on - strandat 319.695 kb on - strandat 319.715 kb on + strandat 319.715 kb on + strandat 319.715 kb on + strandat 319.716 kb on - strandat 319.724 kb on + strandat 319.725 kb on - strandat 319.725 kb on - strandat 319.725 kb on - strandat 319.725 kb on - strandat 319.767 kb on + strandat 319.769 kb on + strandat 319.770 kb on - strandat 319.771 kb on + strandat 319.771 kb on + strandat 319.771 kb on + strandat 319.771 kb on + strandat 319.771 kb on + strandat 319.771 kb on + strandat 319.772 kb on - strandat 319.772 kb on - strandat 319.772 kb on - strandat 319.772 kb on - strandat 319.837 kb on - strandat 319.837 kb on - strandat 319.840 kb on + strandat 319.887 kb on - strandat 319.966 kb on + strand, within GFF2529at 319.967 kb on - strand, within GFF2529at 320.108 kb on + strand, within GFF2529at 320.108 kb on + strand, within GFF2529at 320.108 kb on + strand, within GFF2529at 320.108 kb on + strand, within GFF2529at 320.108 kb on + strand, within GFF2529at 320.108 kb on + strand, within GFF2529at 320.109 kb on - strand, within GFF2529at 320.109 kb on - strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.113 kb on + strand, within GFF2529at 320.114 kb on - strand, within GFF2529at 320.114 kb on - strand, within GFF2529at 320.114 kb on - strand, within GFF2529at 320.114 kb on - strand, within GFF2529at 320.114 kb on - strand, within GFF2529at 320.114 kb on - strand, within GFF2529at 320.114 kb on - strand, within GFF2529at 320.114 kb on - strand, within GFF2529at 320.147 kb on - strand, within GFF2529at 320.481 kb on - strand, within GFF2530at 320.481 kb on - strand, within GFF2530at 320.489 kb on - strand, within GFF2530at 320.489 kb on - strand, within GFF2530at 320.489 kb on - strand, within GFF2530at 320.608 kb on - strand, within GFF2530at 320.684 kb on - strand, within GFF2530

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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318,633 - GFF2526 0.52 +1.2
318,643 + GFF2526 0.53 +1.2
318,643 + GFF2526 0.53 +0.2
318,643 + GFF2526 0.53 -0.7
318,644 - GFF2526 0.53 +1.0
318,644 - GFF2526 0.53 +0.5
318,644 - GFF2526 0.53 +0.6
318,668 + GFF2526 0.57 +0.3
318,669 - GFF2526 0.57 -0.3
318,812 + GFF2526 0.76 +0.7
318,812 + GFF2526 0.76 -0.6
318,813 - GFF2526 0.76 +0.7
318,813 - GFF2526 0.76 +0.2
318,813 - GFF2526 0.76 +0.2
318,815 + GFF2526 0.76 -0.4
318,815 + GFF2526 0.76 +1.7
318,815 + GFF2526 0.76 +0.0
318,896 + GFF2526 0.87 +0.3
318,938 + -0.7
318,938 + -0.5
318,938 + +0.2
318,938 + +0.4
318,939 - -0.3
318,939 - +0.8
318,939 - -0.6
318,939 - +1.1
318,940 + +1.7
318,941 - -1.8
318,993 + +0.2
318,993 + +0.2
318,993 + -0.3
318,994 - +0.3
318,994 - +0.5
319,014 + -1.2
319,014 + +0.1
319,015 - +1.4
319,025 + -0.7
319,026 - +0.3
319,026 - +0.4
319,034 - GFF2527 0.11 -1.2
319,044 + GFF2527 0.14 +0.8
319,045 - GFF2527 0.14 -1.7
319,082 - GFF2527 0.23 -0.5
319,207 - GFF2527 0.54 -1.3
319,207 - GFF2527 0.54 +0.1
319,273 + GFF2527 0.71 -0.3
319,273 + GFF2527 0.71 +0.2
319,273 + GFF2527 0.71 -0.4
319,274 - GFF2527 0.71 -1.6
319,274 - GFF2527 0.71 -0.3
319,274 - GFF2527 0.71 -0.7
319,274 - GFF2527 0.71 +0.5
319,274 - GFF2527 0.71 +0.7
319,285 + GFF2527 0.74 +0.0
319,285 + GFF2527 0.74 -0.3
319,285 + GFF2527 0.74 -0.0
319,285 + GFF2527 0.74 +0.6
319,286 - GFF2527 0.74 +0.2
319,286 - GFF2527 0.74 +0.1
319,325 + GFF2527 0.84 +1.2
319,325 + GFF2527 0.84 +1.7
319,360 - -1.0
319,387 + -0.5
319,394 + +1.3
319,452 + +0.9
319,452 + -0.1
319,452 + -0.5
319,453 - -0.0
319,547 - GFF2528 0.41 -0.4
319,669 + -0.5
319,669 + -1.3
319,669 + -0.4
319,669 + +0.5
319,669 + +0.2
319,670 - +0.1
319,670 - +0.4
319,670 - +1.1
319,673 + -0.3
319,673 + -0.6
319,673 + -1.5
319,673 + +0.3
319,674 - -0.5
319,674 - +0.7
319,674 - +0.1
319,674 - -0.3
319,682 - +0.2
319,682 - -0.0
319,694 + +0.1
319,695 - +0.4
319,695 - -1.2
319,695 - -0.6
319,715 + +0.8
319,715 + +0.4
319,715 + +0.3
319,716 - -0.5
319,724 + -0.7
319,725 - -0.6
319,725 - -0.6
319,725 - -0.9
319,725 - +0.8
319,767 + +1.3
319,769 + +0.3
319,770 - -0.0
319,771 + -0.4
319,771 + +0.6
319,771 + +0.0
319,771 + -1.0
319,771 + -0.3
319,771 + -0.4
319,772 - -0.8
319,772 - -0.6
319,772 - -2.2
319,772 - +0.1
319,837 - +0.5
319,837 - -0.7
319,840 + -1.0
319,887 - -0.0
319,966 + GFF2529 0.25 +0.4
319,967 - GFF2529 0.25 +0.9
320,108 + GFF2529 0.55 -0.2
320,108 + GFF2529 0.55 -0.0
320,108 + GFF2529 0.55 -2.3
320,108 + GFF2529 0.55 -0.1
320,108 + GFF2529 0.55 +1.0
320,108 + GFF2529 0.55 +0.7
320,109 - GFF2529 0.55 +0.1
320,109 - GFF2529 0.55 +0.3
320,113 + GFF2529 0.56 -0.0
320,113 + GFF2529 0.56 -0.3
320,113 + GFF2529 0.56 -1.9
320,113 + GFF2529 0.56 +0.7
320,113 + GFF2529 0.56 +1.1
320,113 + GFF2529 0.56 -0.1
320,113 + GFF2529 0.56 +0.2
320,113 + GFF2529 0.56 -0.9
320,113 + GFF2529 0.56 -0.0
320,114 - GFF2529 0.56 -0.2
320,114 - GFF2529 0.56 -0.4
320,114 - GFF2529 0.56 -0.0
320,114 - GFF2529 0.56 +0.2
320,114 - GFF2529 0.56 +0.7
320,114 - GFF2529 0.56 -0.4
320,114 - GFF2529 0.56 +0.4
320,114 - GFF2529 0.56 +0.6
320,147 - GFF2529 0.63 -1.0
320,481 - GFF2530 0.36 +0.5
320,481 - GFF2530 0.36 -0.3
320,489 - GFF2530 0.38 -0.2
320,489 - GFF2530 0.38 -0.7
320,489 - GFF2530 0.38 -1.3
320,608 - GFF2530 0.64 +0.3
320,684 - GFF2530 0.81 -1.4

Or see this region's nucleotide sequence