Strain Fitness in Pseudomonas sp. DMC3 around GFF2439

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2438 and GFF2439 overlap by 4 nucleotidesGFF2439 and GFF2440 are separated by 242 nucleotides GFF2438 - hypothetical protein, at 228,097 to 229,386 GFF2438 GFF2439 - hypothetical protein, at 229,383 to 229,649 GFF2439 GFF2440 - Flagellin, at 229,892 to 230,752 GFF2440 Position (kb) 229 230Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 228.385 kb on + strand, within GFF2438at 228.385 kb on + strand, within GFF2438at 228.385 kb on + strand, within GFF2438at 228.386 kb on - strand, within GFF2438at 228.386 kb on - strand, within GFF2438at 228.386 kb on - strand, within GFF2438at 228.479 kb on - strand, within GFF2438at 228.724 kb on + strand, within GFF2438at 228.724 kb on + strand, within GFF2438at 228.724 kb on + strand, within GFF2438at 228.725 kb on - strand, within GFF2438at 228.937 kb on + strand, within GFF2438at 228.937 kb on + strand, within GFF2438at 228.937 kb on + strand, within GFF2438at 228.962 kb on + strand, within GFF2438at 228.962 kb on + strand, within GFF2438at 228.963 kb on - strand, within GFF2438at 229.015 kb on + strand, within GFF2438at 229.015 kb on + strand, within GFF2438at 229.037 kb on - strand, within GFF2438at 229.270 kb on + strandat 229.271 kb on - strandat 229.291 kb on + strandat 229.291 kb on + strandat 229.291 kb on + strandat 229.291 kb on + strandat 229.291 kb on + strandat 229.291 kb on + strandat 229.292 kb on - strandat 229.292 kb on - strandat 229.292 kb on - strandat 229.293 kb on + strandat 229.294 kb on - strandat 229.294 kb on - strandat 229.294 kb on - strandat 229.480 kb on + strand, within GFF2439at 229.480 kb on + strand, within GFF2439at 229.480 kb on + strand, within GFF2439at 229.480 kb on + strand, within GFF2439at 229.481 kb on - strand, within GFF2439at 229.481 kb on - strand, within GFF2439at 229.498 kb on + strand, within GFF2439at 229.498 kb on + strand, within GFF2439at 229.499 kb on - strand, within GFF2439at 229.499 kb on - strand, within GFF2439at 229.499 kb on - strand, within GFF2439at 229.499 kb on - strand, within GFF2439at 229.499 kb on - strand, within GFF2439at 229.499 kb on - strand, within GFF2439at 229.499 kb on - strand, within GFF2439at 229.602 kb on + strand, within GFF2439at 229.602 kb on + strand, within GFF2439at 229.602 kb on + strand, within GFF2439at 229.602 kb on + strand, within GFF2439at 229.603 kb on - strand, within GFF2439at 229.603 kb on - strand, within GFF2439at 229.603 kb on - strand, within GFF2439at 229.603 kb on - strand, within GFF2439at 229.604 kb on + strand, within GFF2439at 229.605 kb on - strand, within GFF2439at 229.605 kb on - strand, within GFF2439at 229.696 kb on - strandat 229.696 kb on - strandat 229.696 kb on - strandat 229.728 kb on + strandat 229.728 kb on + strandat 229.810 kb on - strandat 229.810 kb on - strandat 229.810 kb on - strandat 229.813 kb on + strandat 229.813 kb on + strandat 229.813 kb on + strandat 229.814 kb on - strandat 229.814 kb on - strandat 229.814 kb on - strandat 229.814 kb on - strandat 229.814 kb on - strandat 229.814 kb on - strandat 229.829 kb on + strandat 229.899 kb on + strandat 229.900 kb on - strandat 229.905 kb on + strandat 229.905 kb on + strandat 230.050 kb on + strand, within GFF2440at 230.050 kb on + strand, within GFF2440at 230.050 kb on + strand, within GFF2440at 230.050 kb on + strand, within GFF2440at 230.050 kb on + strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.051 kb on - strand, within GFF2440at 230.104 kb on + strand, within GFF2440at 230.104 kb on + strand, within GFF2440at 230.104 kb on + strand, within GFF2440at 230.104 kb on + strand, within GFF2440at 230.105 kb on - strand, within GFF2440at 230.105 kb on - strand, within GFF2440at 230.105 kb on - strand, within GFF2440at 230.164 kb on + strand, within GFF2440at 230.182 kb on + strand, within GFF2440at 230.278 kb on + strand, within GFF2440at 230.278 kb on + strand, within GFF2440at 230.279 kb on - strand, within GFF2440at 230.279 kb on - strand, within GFF2440at 230.320 kb on + strand, within GFF2440at 230.321 kb on - strand, within GFF2440at 230.321 kb on - strand, within GFF2440at 230.376 kb on + strand, within GFF2440at 230.377 kb on - strand, within GFF2440at 230.412 kb on + strand, within GFF2440at 230.412 kb on + strand, within GFF2440at 230.413 kb on - strand, within GFF2440at 230.413 kb on - strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.422 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.427 kb on + strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.428 kb on - strand, within GFF2440at 230.440 kb on + strand, within GFF2440at 230.440 kb on + strand, within GFF2440at 230.625 kb on + strand, within GFF2440at 230.626 kb on - strand, within GFF2440

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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228,385 + GFF2438 0.22 +0.5
228,385 + GFF2438 0.22 -0.6
228,385 + GFF2438 0.22 +0.5
228,386 - GFF2438 0.22 -0.3
228,386 - GFF2438 0.22 -0.6
228,386 - GFF2438 0.22 -0.9
228,479 - GFF2438 0.30 +0.8
228,724 + GFF2438 0.49 +0.1
228,724 + GFF2438 0.49 +0.1
228,724 + GFF2438 0.49 -2.8
228,725 - GFF2438 0.49 -0.6
228,937 + GFF2438 0.65 +0.7
228,937 + GFF2438 0.65 +0.3
228,937 + GFF2438 0.65 -0.5
228,962 + GFF2438 0.67 +0.5
228,962 + GFF2438 0.67 +0.6
228,963 - GFF2438 0.67 -0.0
229,015 + GFF2438 0.71 +0.2
229,015 + GFF2438 0.71 -1.6
229,037 - GFF2438 0.73 -0.6
229,270 + -1.1
229,271 - -1.5
229,291 + -0.3
229,291 + +0.8
229,291 + +0.3
229,291 + +0.7
229,291 + -0.1
229,291 + -0.8
229,292 - +0.7
229,292 - -0.4
229,292 - +0.0
229,293 + +0.3
229,294 - -0.1
229,294 - -1.1
229,294 - +0.6
229,480 + GFF2439 0.36 +1.2
229,480 + GFF2439 0.36 +0.5
229,480 + GFF2439 0.36 -1.3
229,480 + GFF2439 0.36 +0.5
229,481 - GFF2439 0.37 +0.7
229,481 - GFF2439 0.37 -0.3
229,498 + GFF2439 0.43 +0.7
229,498 + GFF2439 0.43 -0.3
229,499 - GFF2439 0.43 +0.9
229,499 - GFF2439 0.43 +1.3
229,499 - GFF2439 0.43 -1.3
229,499 - GFF2439 0.43 +0.3
229,499 - GFF2439 0.43 +0.6
229,499 - GFF2439 0.43 -0.2
229,499 - GFF2439 0.43 +1.2
229,602 + GFF2439 0.82 +0.1
229,602 + GFF2439 0.82 +0.2
229,602 + GFF2439 0.82 +0.2
229,602 + GFF2439 0.82 -2.0
229,603 - GFF2439 0.82 -0.6
229,603 - GFF2439 0.82 +2.0
229,603 - GFF2439 0.82 -0.7
229,603 - GFF2439 0.82 -0.3
229,604 + GFF2439 0.83 +0.3
229,605 - GFF2439 0.83 +1.2
229,605 - GFF2439 0.83 +0.3
229,696 - -0.7
229,696 - +0.8
229,696 - +1.9
229,728 + -0.3
229,728 + +0.4
229,810 - +0.3
229,810 - +0.1
229,810 - +0.2
229,813 + +0.1
229,813 + -0.7
229,813 + +1.0
229,814 - -0.7
229,814 - -0.4
229,814 - -1.5
229,814 - +0.6
229,814 - +0.1
229,814 - +2.0
229,829 + +1.2
229,899 + +0.6
229,900 - +0.3
229,905 + +0.7
229,905 + +1.7
230,050 + GFF2440 0.18 -0.2
230,050 + GFF2440 0.18 -0.7
230,050 + GFF2440 0.18 +0.8
230,050 + GFF2440 0.18 +1.5
230,050 + GFF2440 0.18 +1.0
230,051 - GFF2440 0.18 +0.6
230,051 - GFF2440 0.18 +0.3
230,051 - GFF2440 0.18 +0.8
230,051 - GFF2440 0.18 +0.6
230,051 - GFF2440 0.18 -0.8
230,051 - GFF2440 0.18 -0.3
230,051 - GFF2440 0.18 +1.2
230,104 + GFF2440 0.25 +1.1
230,104 + GFF2440 0.25 +0.8
230,104 + GFF2440 0.25 -1.0
230,104 + GFF2440 0.25 -0.2
230,105 - GFF2440 0.25 -0.1
230,105 - GFF2440 0.25 +1.2
230,105 - GFF2440 0.25 +0.2
230,164 + GFF2440 0.32 -0.5
230,182 + GFF2440 0.34 +1.5
230,278 + GFF2440 0.45 -0.0
230,278 + GFF2440 0.45 +0.1
230,279 - GFF2440 0.45 +0.3
230,279 - GFF2440 0.45 -0.7
230,320 + GFF2440 0.50 +0.2
230,321 - GFF2440 0.50 +0.7
230,321 - GFF2440 0.50 +0.2
230,376 + GFF2440 0.56 +0.7
230,377 - GFF2440 0.56 +0.5
230,412 + GFF2440 0.60 +0.3
230,412 + GFF2440 0.60 +1.1
230,413 - GFF2440 0.61 -0.4
230,413 - GFF2440 0.61 +0.1
230,422 + GFF2440 0.62 +0.4
230,422 + GFF2440 0.62 -0.7
230,422 + GFF2440 0.62 +1.0
230,427 + GFF2440 0.62 +0.6
230,427 + GFF2440 0.62 +0.4
230,427 + GFF2440 0.62 +0.1
230,427 + GFF2440 0.62 -0.7
230,428 - GFF2440 0.62 -0.9
230,428 - GFF2440 0.62 +0.6
230,428 - GFF2440 0.62 +0.7
230,428 - GFF2440 0.62 +1.5
230,428 - GFF2440 0.62 +0.4
230,440 + GFF2440 0.64 +1.3
230,440 + GFF2440 0.64 +1.6
230,625 + GFF2440 0.85 -0.6
230,626 - GFF2440 0.85 -0.5

Or see this region's nucleotide sequence