Strain Fitness in Pseudomonas sp. DMC3 around GFF241

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF240 and GFF241 are separated by 174 nucleotidesGFF241 and GFF242 are separated by 162 nucleotides GFF240 - hypothetical protein, at 266,317 to 267,183 GFF240 GFF241 - Putative cysteine protease YraA, at 267,358 to 267,897 GFF241 GFF242 - Ribosomal RNA large subunit methyltransferase I, at 268,060 to 269,256 GFF242 Position (kb) 267 268Strain fitness (log2 ratio) -2 -1 0 1 2at 266.366 kb on + strandat 266.367 kb on - strandat 266.384 kb on + strandat 266.384 kb on + strandat 266.385 kb on - strandat 266.385 kb on - strandat 266.385 kb on - strandat 266.451 kb on - strand, within GFF240at 266.606 kb on + strand, within GFF240at 266.606 kb on + strand, within GFF240at 266.606 kb on + strand, within GFF240at 266.607 kb on - strand, within GFF240at 266.607 kb on - strand, within GFF240at 266.609 kb on + strand, within GFF240at 266.711 kb on + strand, within GFF240at 266.711 kb on + strand, within GFF240at 266.712 kb on - strand, within GFF240at 266.712 kb on - strand, within GFF240at 266.712 kb on - strand, within GFF240at 266.712 kb on - strand, within GFF240at 266.771 kb on + strand, within GFF240at 266.772 kb on - strand, within GFF240at 266.772 kb on - strand, within GFF240at 266.972 kb on + strand, within GFF240at 266.987 kb on + strand, within GFF240at 266.987 kb on + strand, within GFF240at 266.987 kb on + strand, within GFF240at 267.083 kb on + strand, within GFF240at 267.083 kb on + strand, within GFF240at 267.083 kb on + strand, within GFF240at 267.083 kb on + strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.084 kb on - strand, within GFF240at 267.183 kb on + strandat 267.183 kb on + strandat 267.183 kb on + strandat 267.183 kb on + strandat 267.183 kb on + strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.184 kb on - strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.187 kb on + strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.188 kb on - strandat 267.215 kb on - strandat 267.292 kb on + strandat 267.354 kb on - strandat 267.391 kb on - strandat 267.391 kb on - strandat 267.574 kb on + strand, within GFF241at 267.574 kb on + strand, within GFF241at 267.574 kb on + strand, within GFF241at 267.574 kb on + strand, within GFF241at 267.575 kb on - strand, within GFF241at 267.575 kb on - strand, within GFF241at 267.575 kb on - strand, within GFF241at 267.751 kb on + strand, within GFF241at 267.895 kb on + strandat 267.895 kb on + strandat 267.895 kb on + strandat 267.896 kb on - strandat 267.896 kb on - strandat 268.028 kb on + strandat 268.028 kb on + strandat 268.028 kb on + strandat 268.028 kb on + strandat 268.029 kb on - strandat 268.029 kb on - strandat 268.030 kb on + strandat 268.030 kb on + strandat 268.030 kb on + strandat 268.030 kb on + strandat 268.030 kb on + strandat 268.030 kb on + strandat 268.031 kb on - strandat 268.031 kb on - strandat 268.031 kb on - strandat 268.129 kb on + strandat 268.366 kb on + strand, within GFF242at 268.366 kb on + strand, within GFF242at 268.367 kb on - strand, within GFF242at 268.367 kb on - strand, within GFF242at 268.367 kb on - strand, within GFF242at 268.470 kb on + strand, within GFF242at 268.471 kb on - strand, within GFF242at 268.675 kb on + strand, within GFF242at 268.676 kb on - strand, within GFF242at 268.731 kb on - strand, within GFF242at 268.741 kb on + strand, within GFF242at 268.741 kb on + strand, within GFF242at 268.742 kb on - strand, within GFF242at 268.742 kb on - strand, within GFF242at 268.743 kb on + strand, within GFF242at 268.743 kb on + strand, within GFF242at 268.743 kb on + strand, within GFF242at 268.743 kb on + strand, within GFF242at 268.744 kb on - strand, within GFF242at 268.744 kb on - strand, within GFF242at 268.744 kb on - strand, within GFF242at 268.744 kb on - strand, within GFF242at 268.744 kb on - strand, within GFF242at 268.744 kb on - strand, within GFF242at 268.747 kb on + strand, within GFF242at 268.747 kb on + strand, within GFF242at 268.747 kb on + strand, within GFF242at 268.747 kb on + strand, within GFF242at 268.747 kb on + strand, within GFF242at 268.747 kb on + strand, within GFF242at 268.747 kb on + strand, within GFF242at 268.748 kb on - strand, within GFF242at 268.748 kb on - strand, within GFF242at 268.748 kb on - strand, within GFF242at 268.748 kb on - strand, within GFF242

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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266,366 + -0.6
266,367 - +0.5
266,384 + +0.2
266,384 + -0.2
266,385 - -0.2
266,385 - -0.1
266,385 - +0.9
266,451 - GFF240 0.15 +1.0
266,606 + GFF240 0.33 +0.5
266,606 + GFF240 0.33 +0.8
266,606 + GFF240 0.33 +0.8
266,607 - GFF240 0.33 +1.8
266,607 - GFF240 0.33 -0.5
266,609 + GFF240 0.34 +0.2
266,711 + GFF240 0.45 -0.3
266,711 + GFF240 0.45 -0.7
266,712 - GFF240 0.46 -0.6
266,712 - GFF240 0.46 -0.0
266,712 - GFF240 0.46 -1.4
266,712 - GFF240 0.46 +0.6
266,771 + GFF240 0.52 +0.4
266,772 - GFF240 0.52 -0.5
266,772 - GFF240 0.52 -0.2
266,972 + GFF240 0.76 -1.4
266,987 + GFF240 0.77 -0.2
266,987 + GFF240 0.77 -0.0
266,987 + GFF240 0.77 +0.5
267,083 + GFF240 0.88 -0.6
267,083 + GFF240 0.88 +1.6
267,083 + GFF240 0.88 -0.4
267,083 + GFF240 0.88 -1.4
267,084 - GFF240 0.88 +0.1
267,084 - GFF240 0.88 -0.6
267,084 - GFF240 0.88 +0.3
267,084 - GFF240 0.88 +0.1
267,084 - GFF240 0.88 +0.0
267,084 - GFF240 0.88 -0.8
267,183 + -0.2
267,183 + -1.7
267,183 + -1.8
267,183 + -0.7
267,183 + -0.8
267,184 - -1.5
267,184 - +0.3
267,184 - +0.5
267,184 - +0.3
267,184 - +0.3
267,184 - -0.4
267,184 - +0.4
267,187 + +0.2
267,187 + -0.3
267,187 + -0.5
267,187 + -1.8
267,187 + -0.5
267,187 + -0.2
267,187 + -0.5
267,187 + +0.3
267,188 - -1.2
267,188 - +1.0
267,188 - -0.3
267,188 - -1.1
267,188 - -1.4
267,188 - +0.8
267,188 - -0.1
267,215 - +0.1
267,292 + +1.0
267,354 - +1.8
267,391 - +0.5
267,391 - -0.2
267,574 + GFF241 0.40 +0.1
267,574 + GFF241 0.40 -1.4
267,574 + GFF241 0.40 -1.2
267,574 + GFF241 0.40 -0.8
267,575 - GFF241 0.40 +0.1
267,575 - GFF241 0.40 -0.5
267,575 - GFF241 0.40 -1.6
267,751 + GFF241 0.73 -0.3
267,895 + +0.4
267,895 + +0.1
267,895 + +1.1
267,896 - -0.5
267,896 - -0.5
268,028 + -0.2
268,028 + -0.5
268,028 + -0.7
268,028 + -0.4
268,029 - -0.5
268,029 - -0.2
268,030 + -1.8
268,030 + +1.1
268,030 + -0.6
268,030 + -0.2
268,030 + -0.4
268,030 + -1.0
268,031 - -0.1
268,031 - -1.0
268,031 - -0.6
268,129 + -0.4
268,366 + GFF242 0.26 -0.4
268,366 + GFF242 0.26 +0.0
268,367 - GFF242 0.26 -0.5
268,367 - GFF242 0.26 +0.2
268,367 - GFF242 0.26 -0.2
268,470 + GFF242 0.34 +0.6
268,471 - GFF242 0.34 +0.4
268,675 + GFF242 0.51 -1.0
268,676 - GFF242 0.51 -0.4
268,731 - GFF242 0.56 -1.0
268,741 + GFF242 0.57 -0.5
268,741 + GFF242 0.57 +0.1
268,742 - GFF242 0.57 -0.1
268,742 - GFF242 0.57 +0.4
268,743 + GFF242 0.57 +0.4
268,743 + GFF242 0.57 +0.2
268,743 + GFF242 0.57 -1.4
268,743 + GFF242 0.57 -0.8
268,744 - GFF242 0.57 -0.8
268,744 - GFF242 0.57 -0.6
268,744 - GFF242 0.57 -0.5
268,744 - GFF242 0.57 -0.3
268,744 - GFF242 0.57 +0.8
268,744 - GFF242 0.57 -0.3
268,747 + GFF242 0.57 -1.1
268,747 + GFF242 0.57 -0.8
268,747 + GFF242 0.57 +0.5
268,747 + GFF242 0.57 -1.6
268,747 + GFF242 0.57 +0.2
268,747 + GFF242 0.57 -0.1
268,747 + GFF242 0.57 -0.5
268,748 - GFF242 0.57 +0.2
268,748 - GFF242 0.57 -0.3
268,748 - GFF242 0.57 +0.9
268,748 - GFF242 0.57 -0.9

Or see this region's nucleotide sequence