Strain Fitness in Pseudomonas sp. DMC3 around GFF212

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF210 and GFF211 are separated by 11 nucleotidesGFF211 and GFF212 are separated by 254 nucleotidesGFF212 and GFF213 are separated by 7 nucleotidesGFF213 and GFF214 are separated by 26 nucleotides GFF210 - Pyrroline-5-carboxylate reductase, at 240,010 to 240,828 GFF210 GFF211 - hypothetical protein, at 240,840 to 241,430 GFF211 GFF212 - Homoserine O-succinyltransferase, at 241,685 to 242,824 GFF212 GFF213 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 242,832 to 243,452 GFF213 GFF214 - hypothetical protein, at 243,479 to 243,913 GFF214 Position (kb) 241 242 243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 240.826 kb on + strandat 240.826 kb on + strandat 240.827 kb on - strandat 240.827 kb on - strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.837 kb on + strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.838 kb on - strandat 240.868 kb on - strandat 240.894 kb on + strandat 240.948 kb on + strand, within GFF211at 241.104 kb on + strand, within GFF211at 241.458 kb on + strandat 241.551 kb on - strandat 241.612 kb on + strandat 241.650 kb on + strandat 241.651 kb on - strandat 241.656 kb on + strandat 241.656 kb on + strandat 241.656 kb on + strandat 241.656 kb on + strandat 241.656 kb on + strandat 241.656 kb on + strandat 241.657 kb on - strandat 241.657 kb on - strandat 241.657 kb on - strandat 241.657 kb on - strandat 241.657 kb on - strandat 241.788 kb on - strandat 241.800 kb on - strand, within GFF212at 241.808 kb on + strand, within GFF212at 241.809 kb on - strand, within GFF212at 241.809 kb on - strand, within GFF212at 241.809 kb on - strand, within GFF212at 241.887 kb on - strand, within GFF212at 242.023 kb on + strand, within GFF212at 242.384 kb on + strand, within GFF212at 242.384 kb on + strand, within GFF212at 242.384 kb on + strand, within GFF212at 242.384 kb on + strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.385 kb on - strand, within GFF212at 242.448 kb on - strand, within GFF212at 242.448 kb on - strand, within GFF212at 242.534 kb on + strand, within GFF212at 242.534 kb on + strand, within GFF212at 242.534 kb on + strand, within GFF212at 242.535 kb on - strand, within GFF212at 242.535 kb on - strand, within GFF212at 242.561 kb on + strand, within GFF212at 242.561 kb on + strand, within GFF212at 242.562 kb on - strand, within GFF212at 242.723 kb on + strandat 242.724 kb on - strandat 242.780 kb on + strandat 242.780 kb on + strandat 242.781 kb on - strandat 242.781 kb on - strandat 242.801 kb on + strandat 242.801 kb on + strandat 242.802 kb on - strandat 242.802 kb on - strandat 242.953 kb on - strand, within GFF213at 243.237 kb on + strand, within GFF213at 243.238 kb on - strand, within GFF213at 243.247 kb on - strand, within GFF213at 243.247 kb on - strand, within GFF213at 243.368 kb on + strand, within GFF213at 243.369 kb on - strand, within GFF213at 243.369 kb on - strand, within GFF213at 243.373 kb on + strand, within GFF213at 243.373 kb on + strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.374 kb on - strand, within GFF213at 243.380 kb on + strand, within GFF213at 243.381 kb on - strand, within GFF213at 243.388 kb on + strand, within GFF213at 243.388 kb on + strand, within GFF213at 243.405 kb on + strandat 243.405 kb on + strandat 243.405 kb on + strandat 243.502 kb on - strandat 243.502 kb on - strandat 243.590 kb on + strand, within GFF214at 243.590 kb on + strand, within GFF214at 243.590 kb on + strand, within GFF214at 243.591 kb on - strand, within GFF214at 243.591 kb on - strand, within GFF214at 243.591 kb on - strand, within GFF214at 243.591 kb on - strand, within GFF214at 243.794 kb on + strand, within GFF214at 243.794 kb on + strand, within GFF214at 243.794 kb on + strand, within GFF214at 243.795 kb on - strand, within GFF214at 243.795 kb on - strand, within GFF214at 243.795 kb on - strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.797 kb on + strand, within GFF214at 243.798 kb on - strand, within GFF214at 243.798 kb on - strand, within GFF214at 243.809 kb on + strand, within GFF214at 243.809 kb on + strand, within GFF214

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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240,826 + -0.1
240,826 + -0.2
240,827 - -0.4
240,827 - -0.5
240,837 + +0.1
240,837 + -0.3
240,837 + -1.4
240,837 + -0.5
240,837 + -0.6
240,837 + +0.5
240,837 + -0.9
240,837 + -0.8
240,837 + -0.6
240,837 + +0.4
240,837 + +0.1
240,837 + +1.0
240,838 - -1.4
240,838 - +0.8
240,838 - -0.2
240,838 - +0.6
240,838 - +2.1
240,838 - -0.7
240,838 - +0.9
240,838 - -0.3
240,838 - -0.0
240,838 - -1.4
240,838 - -1.0
240,838 - -0.3
240,838 - -1.4
240,838 - +0.4
240,868 - +1.5
240,894 + +0.7
240,948 + GFF211 0.18 +0.0
241,104 + GFF211 0.45 +1.0
241,458 + +0.5
241,551 - -0.1
241,612 + -0.4
241,650 + -0.4
241,651 - +0.3
241,656 + +0.8
241,656 + +2.4
241,656 + -1.8
241,656 + +0.6
241,656 + -0.3
241,656 + +0.6
241,657 - -1.9
241,657 - -2.7
241,657 - -1.2
241,657 - -0.7
241,657 - -2.0
241,788 - -0.1
241,800 - GFF212 0.10 -2.2
241,808 + GFF212 0.11 -1.8
241,809 - GFF212 0.11 -4.4
241,809 - GFF212 0.11 -4.2
241,809 - GFF212 0.11 -2.5
241,887 - GFF212 0.18 -2.0
242,023 + GFF212 0.30 -3.0
242,384 + GFF212 0.61 -3.4
242,384 + GFF212 0.61 -3.1
242,384 + GFF212 0.61 -2.9
242,384 + GFF212 0.61 -2.8
242,385 - GFF212 0.61 -3.6
242,385 - GFF212 0.61 -2.4
242,385 - GFF212 0.61 -3.7
242,385 - GFF212 0.61 -1.1
242,385 - GFF212 0.61 -2.1
242,448 - GFF212 0.67 -3.1
242,448 - GFF212 0.67 -0.5
242,534 + GFF212 0.74 -4.0
242,534 + GFF212 0.74 -3.8
242,534 + GFF212 0.74 -3.5
242,535 - GFF212 0.75 -3.6
242,535 - GFF212 0.75 +0.5
242,561 + GFF212 0.77 -2.2
242,561 + GFF212 0.77 -2.3
242,562 - GFF212 0.77 -3.1
242,723 + -4.2
242,724 - -0.4
242,780 + -2.2
242,780 + -3.9
242,781 - -2.5
242,781 - -2.9
242,801 + -0.8
242,801 + -2.8
242,802 - -3.2
242,802 - -1.4
242,953 - GFF213 0.19 -0.2
243,237 + GFF213 0.65 -4.1
243,238 - GFF213 0.65 -0.8
243,247 - GFF213 0.67 -1.8
243,247 - GFF213 0.67 -1.4
243,368 + GFF213 0.86 -1.8
243,369 - GFF213 0.86 -3.3
243,369 - GFF213 0.86 -3.2
243,373 + GFF213 0.87 -0.5
243,373 + GFF213 0.87 -2.8
243,374 - GFF213 0.87 -2.2
243,374 - GFF213 0.87 -2.0
243,374 - GFF213 0.87 -4.6
243,374 - GFF213 0.87 -1.3
243,374 - GFF213 0.87 -3.2
243,380 + GFF213 0.88 -3.2
243,381 - GFF213 0.88 -3.1
243,388 + GFF213 0.90 -1.8
243,388 + GFF213 0.90 -2.9
243,405 + -3.4
243,405 + -0.5
243,405 + -2.7
243,502 - +0.8
243,502 - -0.2
243,590 + GFF214 0.26 -1.7
243,590 + GFF214 0.26 +1.3
243,590 + GFF214 0.26 +0.4
243,591 - GFF214 0.26 -0.2
243,591 - GFF214 0.26 +0.4
243,591 - GFF214 0.26 -0.3
243,591 - GFF214 0.26 +2.1
243,794 + GFF214 0.72 -0.7
243,794 + GFF214 0.72 +0.1
243,794 + GFF214 0.72 -0.1
243,795 - GFF214 0.73 -1.2
243,795 - GFF214 0.73 +0.8
243,795 - GFF214 0.73 -0.0
243,797 + GFF214 0.73 +0.6
243,797 + GFF214 0.73 -1.5
243,797 + GFF214 0.73 -0.5
243,797 + GFF214 0.73 +0.6
243,797 + GFF214 0.73 -0.2
243,797 + GFF214 0.73 +0.1
243,798 - GFF214 0.73 -0.5
243,798 - GFF214 0.73 +0.9
243,809 + GFF214 0.76 -0.7
243,809 + GFF214 0.76 -0.1

Or see this region's nucleotide sequence