Strain Fitness in Pseudomonas sp. DMC3 around GFF1987

Experiment: D-Glucose and D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1986 and GFF1987 are separated by 108 nucleotidesGFF1987 and GFF1988 are separated by 365 nucleotides GFF1986 - K(+)/H(+) antiporter NhaP2, at 217,031 to 218,839 GFF1986 GFF1987 - Tyrosine recombinase XerD, at 218,948 to 219,844 GFF1987 GFF1988 - Thiol:disulfide interchange protein DsbC, at 220,210 to 220,941 GFF1988 Position (kb) 218 219 220Strain fitness (log2 ratio) -2 -1 0 1 2at 218.181 kb on + strand, within GFF1986at 218.216 kb on + strand, within GFF1986at 218.328 kb on + strand, within GFF1986at 218.329 kb on - strand, within GFF1986at 218.438 kb on + strand, within GFF1986at 218.439 kb on - strand, within GFF1986at 218.880 kb on + strandat 218.907 kb on + strandat 218.924 kb on - strandat 218.924 kb on - strandat 218.994 kb on + strandat 219.149 kb on + strand, within GFF1987at 219.150 kb on - strand, within GFF1987at 219.197 kb on + strand, within GFF1987at 219.197 kb on + strand, within GFF1987at 219.197 kb on + strand, within GFF1987at 219.198 kb on - strand, within GFF1987at 219.203 kb on + strand, within GFF1987at 219.377 kb on + strand, within GFF1987at 219.377 kb on + strand, within GFF1987at 219.377 kb on + strand, within GFF1987at 219.377 kb on + strand, within GFF1987at 219.377 kb on + strand, within GFF1987at 219.378 kb on - strand, within GFF1987at 219.378 kb on - strand, within GFF1987at 219.378 kb on - strand, within GFF1987at 219.447 kb on + strand, within GFF1987at 219.448 kb on - strand, within GFF1987at 219.448 kb on - strand, within GFF1987at 219.524 kb on + strand, within GFF1987at 219.524 kb on + strand, within GFF1987at 219.524 kb on + strand, within GFF1987at 219.524 kb on + strand, within GFF1987at 219.525 kb on - strand, within GFF1987at 219.525 kb on - strand, within GFF1987at 219.525 kb on - strand, within GFF1987at 219.525 kb on - strand, within GFF1987at 219.526 kb on + strand, within GFF1987at 219.526 kb on + strand, within GFF1987at 219.526 kb on + strand, within GFF1987at 219.527 kb on - strand, within GFF1987at 219.527 kb on - strand, within GFF1987at 219.527 kb on - strand, within GFF1987at 219.527 kb on - strand, within GFF1987at 219.527 kb on - strand, within GFF1987at 219.527 kb on - strand, within GFF1987at 219.782 kb on + strandat 219.782 kb on + strandat 219.783 kb on - strandat 219.783 kb on - strandat 219.785 kb on - strandat 219.855 kb on - strandat 219.855 kb on - strandat 219.855 kb on - strandat 219.888 kb on + strandat 219.889 kb on - strandat 219.961 kb on + strandat 219.961 kb on + strandat 219.988 kb on + strandat 219.988 kb on + strandat 220.006 kb on + strandat 220.006 kb on + strandat 220.007 kb on - strandat 220.007 kb on - strandat 220.007 kb on - strandat 220.007 kb on - strandat 220.043 kb on + strandat 220.043 kb on + strandat 220.044 kb on - strandat 220.044 kb on - strandat 220.044 kb on - strandat 220.111 kb on + strandat 220.111 kb on + strandat 220.111 kb on + strandat 220.111 kb on + strandat 220.112 kb on - strandat 220.112 kb on - strandat 220.112 kb on - strandat 220.112 kb on - strandat 220.112 kb on - strandat 220.118 kb on + strandat 220.205 kb on + strandat 220.205 kb on + strandat 220.205 kb on + strandat 220.205 kb on + strandat 220.369 kb on + strand, within GFF1988at 220.370 kb on - strand, within GFF1988at 220.370 kb on - strand, within GFF1988at 220.370 kb on - strand, within GFF1988at 220.402 kb on + strand, within GFF1988at 220.402 kb on + strand, within GFF1988at 220.575 kb on + strand, within GFF1988at 220.607 kb on - strand, within GFF1988at 220.666 kb on + strand, within GFF1988at 220.666 kb on + strand, within GFF1988

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and D,L-Lactate (C)
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218,181 + GFF1986 0.64 +0.1
218,216 + GFF1986 0.66 +0.6
218,328 + GFF1986 0.72 +1.3
218,329 - GFF1986 0.72 +0.1
218,438 + GFF1986 0.78 +0.1
218,439 - GFF1986 0.78 -0.1
218,880 + -0.7
218,907 + -0.4
218,924 - +1.5
218,924 - -0.7
218,994 + +0.5
219,149 + GFF1987 0.22 +1.0
219,150 - GFF1987 0.23 +0.1
219,197 + GFF1987 0.28 +0.4
219,197 + GFF1987 0.28 -0.9
219,197 + GFF1987 0.28 -0.3
219,198 - GFF1987 0.28 -1.9
219,203 + GFF1987 0.28 -0.2
219,377 + GFF1987 0.48 +0.0
219,377 + GFF1987 0.48 -0.5
219,377 + GFF1987 0.48 -0.6
219,377 + GFF1987 0.48 +0.5
219,377 + GFF1987 0.48 +0.3
219,378 - GFF1987 0.48 -0.4
219,378 - GFF1987 0.48 -0.8
219,378 - GFF1987 0.48 +2.3
219,447 + GFF1987 0.56 +1.0
219,448 - GFF1987 0.56 +0.3
219,448 - GFF1987 0.56 -0.9
219,524 + GFF1987 0.64 -0.0
219,524 + GFF1987 0.64 -1.3
219,524 + GFF1987 0.64 +0.5
219,524 + GFF1987 0.64 -0.9
219,525 - GFF1987 0.64 +0.4
219,525 - GFF1987 0.64 +0.1
219,525 - GFF1987 0.64 -1.0
219,525 - GFF1987 0.64 -0.3
219,526 + GFF1987 0.64 +0.2
219,526 + GFF1987 0.64 -0.6
219,526 + GFF1987 0.64 +0.5
219,527 - GFF1987 0.65 -0.8
219,527 - GFF1987 0.65 -1.5
219,527 - GFF1987 0.65 -0.3
219,527 - GFF1987 0.65 -0.4
219,527 - GFF1987 0.65 -0.5
219,527 - GFF1987 0.65 -0.4
219,782 + +0.1
219,782 + +0.4
219,783 - -1.0
219,783 - -0.5
219,785 - -0.5
219,855 - +0.7
219,855 - +0.8
219,855 - -0.2
219,888 + +1.3
219,889 - -0.3
219,961 + -1.7
219,961 + -0.7
219,988 + +0.7
219,988 + -0.8
220,006 + +1.2
220,006 + +0.2
220,007 - -0.7
220,007 - -0.3
220,007 - -0.3
220,007 - +0.6
220,043 + -0.6
220,043 + -0.9
220,044 - -0.7
220,044 - +1.5
220,044 - +0.4
220,111 + +0.4
220,111 + +0.2
220,111 + -0.6
220,111 + -0.3
220,112 - -2.6
220,112 - -1.9
220,112 - -1.0
220,112 - +1.1
220,112 - -1.4
220,118 + -1.6
220,205 + +0.3
220,205 + -0.3
220,205 + +1.0
220,205 + -0.7
220,369 + GFF1988 0.22 +1.0
220,370 - GFF1988 0.22 -0.6
220,370 - GFF1988 0.22 -0.6
220,370 - GFF1988 0.22 -0.9
220,402 + GFF1988 0.26 +0.3
220,402 + GFF1988 0.26 -1.2
220,575 + GFF1988 0.50 -1.3
220,607 - GFF1988 0.54 -1.6
220,666 + GFF1988 0.62 -0.5
220,666 + GFF1988 0.62 +0.9

Or see this region's nucleotide sequence